MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.3 nTPM
HPA Brain:30.1 nTPM
GTEx:27.3 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:13.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.4
2586 Male, age 75, left hemisphere 43.4
2019 Male, age 18, unknown 31.4
2411 Female, age 72, unknown 29.9
1827 Male, age 72, unknown 29.6
2828 Female, age 72, unknown 28.5
2666 Male, age 74, left hemisphere 26.8
1833 Male, age 53, unknown 24.9
1830 Male, age 51, unknown 24.0
1870 Female, age 42, unknown 23.7
2219 Male, age 76, both hemispheres 22.4
Dorsal raphe nucleus
nTPM: 25.4
2298 Female, age 72, unknown 27.2
1828 Male, age 53, unknown 27.0
2047 Male, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 24.7
2016 Female, age 72, unknown 23.4
Inferior colliculus
nTPM: 25.6
2097 Female, age 72, unknown 28.3
1890 Male, age 53, unknown 26.8
1848 Female, age 42, unknown 25.4
2849 Male, age 72, unknown 22.0
Median raphe nucleus
nTPM: 23.0
2220 Male, age 76, midline 23.0
Periaquaductal grey, anterior
nTPM: 30.1
1947 Male, age 18, unknown 31.8
2502 Female, age 75, unknown 30.8
1795 Male, age 51, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 23.1
1840 Male, age 53, unknown 25.4
1831 Male, age 72, unknown 24.5
2464 Female, age 72, unknown 23.2
2850 Male, age 76, both hemispheres 19.2
Periaquaductal grey, lateral
nTPM: 22.0
2053 Male, age 18, unknown 23.5
2140 Male, age 76, both hemispheres 21.3
2272 Male, age 74, both hemispheres 21.3
Pretectal area
nTPM: 28.5
2007 Male, age 72, unknown 37.4
1817 Female, age 42, unknown 34.9
1816 Male, age 51, unknown 34.3
1944 Female, age 72, unknown 31.6
1815 Male, age 53, unknown 30.9
2667 Female, age 75, unknown 26.4
2407 Male, age 75, both hemispheres 24.1
2825 Male, age 18, unknown 24.1
2224 Female, age 72, unknown 23.8
2273 Male, age 74, both hemispheres 23.4
2316 Male, age 76, right hemisphere 22.2
Red nucleus
nTPM: 27.6
1821 Female, age 72, unknown 30.8
2785 Male, age 18, unknown 29.8
2584 Male, age 75, left hemisphere 29.7
2588 Male, age 74, left hemisphere 28.7
2503 Female, age 72, unknown 27.7
1904 Male, age 53, unknown 27.5
1954 Female, age 42, unknown 27.1
2769 Male, age 72, unknown 26.6
2725 Female, age 75, unknown 26.3
1865 Male, age 51, unknown 26.2
2227 Male, age 72, unknown 26.2
2823 Male, age 76, right hemisphere 24.6
Substantia nigra
nTPM: 28.6
1916 Female, age 42, unknown 34.3
2583 Male, age 75, right hemisphere 31.3
1851 Male, age 51, unknown 31.0
1889 Female, age 72, unknown 30.6
1941 Male, age 53, unknown 28.9
2590 Female, age 75, unknown 28.1
2665 Male, age 74, both hemispheres 28.0
2241 Male, age 72, unknown 27.7
2409 Female, age 72, unknown 24.5
2699 Male, age 18, unknown 21.8
Superior colliculus
nTPM: 27.1
2664 Male, age 75, both hemispheres 30.5
2261 Male, age 18, unknown 29.9
2668 Female, age 75, unknown 29.6
2087 Female, age 72, unknown 28.9
1796 Male, age 53, unknown 27.3
1895 Male, age 76, right hemisphere 26.4
2587 Male, age 74, left hemisphere 25.6
1839 Male, age 51, unknown 25.2
1913 Female, age 42, unknown 24.4
1995 Male, age 72, unknown 23.6
Ventral tegmental area
nTPM: 27.2
2410 Female, age 72, unknown 32.9
1942 Male, age 51, unknown 28.9
1915 Female, age 42, unknown 28.1
2218 Male, age 76, both hemispheres 26.1
2223 Female, age 72, unknown 25.5
2021 Male, age 53, unknown 21.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.3
Samples: 139

Max nTPM: 46.4
Min nTPM: 16.0
Std nTPM: 5.4
Median nTPM: 26.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 46.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 40.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 39.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 37.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 37.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 37.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 36.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 36.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 36.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.1
Samples: 4

Max nTPM: 28.8
Min nTPM: 14.6
Sample A Female 28.8
Sample B Female 16.7
Sample C Male 20.1
Sample D Male 14.6
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 25.2
Min nTPM: 19.4
Sample A Female 21.2
Sample B Female 19.4
Sample C Male 25.2
Sample D Male 20.8
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 20.2
Min nTPM: 14.4
Sample B Female 16.6
Sample C Male 20.2
Sample D Male 14.4
Superior colliculi
nTPM: 24.1
Samples: 4

Max nTPM: 29.4
Min nTPM: 18.8
Sample A Female 29.4
Sample B Female 23.2
Sample C Male 25.1
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 15.7
Min nTPM: 10.8
Sample A Male 15.7
Sample B Male 10.8
Sample C Female 11.3
Sample D Female 14.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67815941 Antisense, RP_040920_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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