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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISG15 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
154.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4659.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2160.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1624.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1440.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1373.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
887.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
878.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
803.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
792.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
746.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
719.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
705.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
657.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
560.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
538.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
535.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
514.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
513.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
488.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
480.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
449.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
432.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
430.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
424.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
415.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
367.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
363.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
349.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
346.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
340.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
316.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
308.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
306.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
294.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
287.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
284.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
270.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
259.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
254.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
248.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
244.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
243.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
236.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
234.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
233.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
229.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
226.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
218.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
217.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
214.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
212.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
209.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
208.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
208.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
205.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
203.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
200.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
194.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
190.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
189.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
187.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
186.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
185.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
184.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
184.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
178.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
177.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
175.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
174.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
171.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
170.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
168.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
168.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
167.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
164.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
163.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
161.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
160.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
159.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
159.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
158.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
158.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
157.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
156.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
155.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
151.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
149.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
147.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
146.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
145.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
143.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
143.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
142.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
141.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
140.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
140.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
137.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
137.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
136.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
135.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
135.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
133.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
132.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
130.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
130.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
129.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
129.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
128.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
127.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
127.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
127.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
126.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
126.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
126.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
125.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
125.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
123.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
122.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
121.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
121.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
120.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
120.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
120.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
119.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
118.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
118.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
117.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
114.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
113.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
113.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
110.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
110.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
109.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
108.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
106.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
105.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
105.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
105.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
104.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
104.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
103.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
101.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
101.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
100.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
99.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
99.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
99.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
98.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
98.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
98.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
98.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
97.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
96.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
95.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
95.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
94.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
94.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
94.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
94.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
93.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
93.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
93.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
93.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
92.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
92.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
91.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
88.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
87.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
86.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
86.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
85.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
85.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
83.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
83.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
81.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
80.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
80.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
80.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
80.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
79.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
79.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
77.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
77.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
77.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
77.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
76.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
76.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
76.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
76.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
75.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
74.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
73.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
72.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
72.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
72.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
71.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
71.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
71.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
71.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
70.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
70.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
70.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
70.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
69.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
69.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
68.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
68.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
68.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
68.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
68.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
68.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
67.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
66.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
66.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
66.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
66.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
63.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
63.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
63.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
63.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
62.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
62.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
62.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
61.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
61.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
61.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
61.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
61.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
61.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
60.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
60.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
60.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
60.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
60.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
60.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
60.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
60.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
60.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
59.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
59.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
59.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
58.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
58.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
57.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
56.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
56.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
56.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
55.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
55.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
54.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
53.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
52.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
52.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
52.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
52.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
51.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
51.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
49.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
49.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
49.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
47.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
47.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
47.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
47.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
46.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
46.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
46.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
45.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
43.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
41.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
41.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
41.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
40.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
40.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
37.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
34.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISG15 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
86.7
Number of samples
231
Samples
Sample
Description
TPM
DO50813
0 years, male, NA, stage:2, alive, 420 days
731.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
731.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
624.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
537.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
505.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
493.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
464.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
456.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
405.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
284.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
245.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
232.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
231.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
230.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
226.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
217.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
201.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
193.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
183.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
181.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
181.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
178.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
174.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
171.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
167.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
166.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
166.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
165.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
155.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
155.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
148.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
145.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
144.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
144.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
144.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
140.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
139.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
138.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
136.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
135.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
127.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
126.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
124.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
124.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
120.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
119.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
113.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
110.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
108.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
107.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
106.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
106.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
106.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
105.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
102.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
101.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
98.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
96.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
96.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
92.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
92.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
92.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
89.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
88.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
88.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
87.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
85.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
85.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
85.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
85.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
80.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
80.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
80.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
76.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
75.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
74.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
74.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
74.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
73.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
73.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
72.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
72.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
72.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
71.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
71.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
69.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
69.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
67.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
66.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
66.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
63.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
63.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
62.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
62.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
62.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
60.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
59.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
59.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
59.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
59.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
58.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
57.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
56.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
56.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
55.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
55.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
55.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
55.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
53.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
53.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
53.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
52.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
52.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
52.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
51.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
51.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
51.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
51.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
50.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
50.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
50.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
48.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
48.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
48.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
48.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
47.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
47.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
46.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
45.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
43.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
42.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
42.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
41.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
41.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
38.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
36.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
2.5
327
Tumor
2.4
571
Tumor
2.1
955
Tumor
2.0
1015
Tumor
1.8
262
Normal
1.7
557
Tumor
1.6
467
Tumor
1.6
817
Tumor
1.6
416
Normal
1.6
883
Tumor
1.4
344
Normal
1.4
627
Tumor
1.3
383
Tumor
1.2
513
Tumor
1.1
661
Tumor
1.1
261
Tumor
1.1
884
Normal
1.0
956
Normal
1.0
311
Tumor
1.0
214
Normal
1.0
283
Tumor
1.0
434
Normal
0.9
814
Normal
0.9
857
Tumor
0.9
415
Tumor
0.9
213
Tumor
0.8
343
Tumor
0.8
813
Tumor
0.8
451
Tumor
0.8
966
Normal
0.8
527
Tumor
0.8
447
Tumor
0.8
448
Normal
0.7
536
Normal
0.7
1043
Tumor
0.7
1044
Normal
0.7
865
Tumor
0.7
357
Tumor
0.7
218
Normal
0.6
951
Tumor
0.6
1045
Tumor
0.6
1031
Tumor
0.6
524
Normal
0.6
188
Normal
0.6
217
Tumor
0.6
452
Normal
0.6
358
Normal
0.5
224
Normal
0.5
431
Tumor
0.5
925
Tumor
0.5
477
Tumor
0.5
126
Normal
0.4
268
Normal
0.4
964
Normal
0.4
391
Tumor
0.4
142
Normal
0.4
352
Normal
0.4
982
Normal
0.4
1046
Normal
0.4
386
Normal
0.3
815
Tumor
0.3
286
Normal
0.3
721
Tumor
0.3
713
Tumor
0.3
981
Tumor
0.3
554
Normal
0.3
915
Tumor
0.3
851
Tumor
0.3
525
Tumor
0.2
1028
Normal
0.2
978
Normal
0.2
913
Tumor
0.2
697
Tumor
0.2
422
Normal
0.2
284
Normal
0.2
558
Normal
0.2
685
Tumor
0.2
128
Normal
0.2
628
Normal
0.2
954
Normal
0.2
515
Tumor
0.2
433
Tumor
0.2
272
Normal
0.2
367
Tumor
0.1
376
Normal
0.1
396
Normal
0.1
914
Normal
0.1
923
Tumor
0.1
328
Normal
0.1
487
Tumor
0.1
916
Normal
0.1
533
Tumor
0.1
724
Normal
0.1
353
Tumor
0.1
666
Normal
0.1
858
Normal
0.1
111
Normal
0.1
258
Normal
0.1
228
Normal
0.1
412
Normal
0.1
1027
Tumor
0.1
662
Normal
0.0
535
Tumor
0.0
615
Tumor
0.0
387
Tumor
0.0
641
Tumor
0.0
922
Normal
0.0
816
Normal
0.0
538
Normal
0.0
141
Tumor
0.0
351
Tumor
0.0
873
Tumor
0.0
314
Normal
0.0
728
Normal
0.0
421
Tumor
0.0
455
Tumor
-0.1
354
Normal
-0.1
364
Normal
-0.1
435
Tumor
-0.1
778
Normal
-0.1
755
Tumor
-0.1
926
Normal
-0.1
137
Tumor
-0.1
136
Normal
-0.1
777
Tumor
-0.1
976
Normal
-0.1
516
Normal
-0.1
514
Normal
-0.1
741
Tumor
-0.1
414
Normal
-0.1
861
Tumor
-0.1
874
Normal
-0.1
572
Normal
-0.1
446
Normal
-0.1
138
Normal
-0.1
365
Tumor
-0.1
223
Tumor
-0.1
127
Tumor
-0.1
918
Normal
-0.2
742
Normal
-0.2
568
Normal
-0.2
172
Normal
-0.2
212
Normal
-0.2
427
Tumor
-0.2
187
Tumor
-0.2
963
Tumor
-0.2
984
Normal
-0.2
1016
Normal
-0.2
958
Normal
-0.2
786
Normal
-0.2
196
Normal
-0.2
257
Tumor
-0.2
564
Normal
-0.2
114
Normal
-0.2
123
Tumor
-0.2
723
Tumor
-0.2
944
Normal
-0.2
881
Tumor
-0.2
366
Normal
-0.2
518
Normal
-0.2
1022
Normal
-0.2
785
Tumor
-0.2
468
Normal
-0.2
368
Normal
-0.2
211
Tumor
-0.2
952
Normal
-0.2
443
Tumor
-0.2
716
Normal
-0.2
977
Tumor
-0.2
361
Tumor
-0.2
727
Tumor
-0.2
917
Tumor
-0.2
392
Normal
-0.2
232
Normal
-0.3
124
Normal
-0.3
362
Normal
-0.3
698
Normal
-0.3
937
Tumor
-0.3
478
Normal
-0.3
465
Tumor
-0.3
852
Normal
-0.3
267
Tumor
-0.3
375
Tumor
-0.3
227
Tumor
-0.3
384
Normal
-0.3
738
Normal
-0.3
553
Tumor
-0.3
616
Normal
-0.3
534
Normal
-0.3
526
Normal
-0.3
171
Tumor
-0.3
864
Normal
-0.3
278
Normal
-0.3
756
Normal
-0.3
456
Normal
-0.3
424
Normal
-0.3
943
Tumor
-0.3
342
Normal
-0.3
878
Normal
-0.3
432
Normal
-0.3
411
Tumor
-0.3
112
Tumor
-0.3
924
Normal
-0.3
968
Normal
-0.3
466
Normal
-0.3
192
Normal
-0.3
648
Normal
-0.3
444
Normal
-0.3
636
Normal
-0.3
528
Normal
-0.4
664
Normal
-0.4
461
Tumor
-0.4
1014
Normal
-0.4
1026
Normal
-0.4
722
Normal
-0.4
574
Normal
-0.4
737
Tumor
-0.4
1013
Tumor
-0.4
746
Normal
-0.4
824
Normal
-0.4
426
Normal
-0.4
1032
Normal
-0.4
186
Normal
-0.4
222
Normal
-0.4
428
Normal
-0.4
413
Tumor
-0.4
1021
Tumor
-0.4
866
Normal
-0.4
423
Tumor
-0.4
436
Normal
-0.4
642
Normal
-0.4
663
Tumor
-0.4
195
Tumor
-0.4
686
Normal
-0.4
132
Normal
-0.4
867
Tumor
-0.4
185
Tumor
-0.4
546
Normal
-0.4
221
Tumor
-0.4
312
Normal
-0.4
356
Normal
-0.4
635
Tumor
-0.4
492
Normal
-0.4
715
Tumor
-0.4
983
Tumor
-0.4
494
Normal
-0.4
297
Tumor
-0.5
498
Normal
-0.5
161
Tumor
-0.5
938
Normal
-0.5
145
Tumor
-0.5
148
Normal
-0.5
967
Tumor
-0.5
135
Tumor
-0.5
146
Normal
-0.5
1042
Normal
-0.5
862
Normal
-0.5
882
Normal
-0.5
493
Tumor
-0.5
474
Normal
-0.5
464
Normal
-0.5
957
Tumor
-0.5
975
Tumor
-0.5
868
Normal
-0.5
823
Tumor
-0.5
277
Tumor
-0.5
863
Tumor
-0.5
393
Tumor
-0.5
563
Tumor
-0.5
744
Normal
-0.5
953
Tumor
-0.5
488
Normal
-0.5
341
Tumor
-0.5
385
Tumor
-0.5
965
Tumor
-0.6
818
Normal
-0.6
714
Normal
-0.6
125
Tumor
-0.6
462
Normal
-0.6
388
Normal
-0.6
573
Tumor
-0.6
298
Normal
-0.6
395
Tumor
-0.6
313
Tumor
-0.6
445
Tumor
-0.6
647
Tumor
-0.6
912
Normal
-0.6
1041
Tumor
-0.7
567
Tumor
-0.7
491
Tumor
-0.7
618
Normal
-0.7
696
Normal
-0.7
537
Tumor
-0.7
665
Tumor
-0.7
1025
Tumor
-0.7
472
Normal
-0.7
332
Normal
-0.7
482
Normal
-0.7
162
Normal
-0.8
191
Tumor
-0.8
481
Tumor
-0.8
745
Tumor
-0.8
231
Tumor
-0.8
497
Tumor
-0.8
394
Normal
-0.8
271
Tumor
-0.8
672
Normal
-0.8
921
Tumor
-0.8
484
Normal
-0.9
425
Tumor
-0.9
355
Tumor
-0.9
911
Tumor
-0.9
363
Tumor
-1.0
545
Tumor
-1.0
473
Tumor
-1.0
471
Tumor
-1.0
523
Tumor
-1.0
483
Tumor
-1.0
331
Tumor
-1.1
463
Tumor
-1.2
695
Tumor
-1.2
877
Tumor
-1.2
147
Tumor
-1.2
671
Tumor
-1.4
517
Tumor
-1.5
617
Tumor
-1.5
285
Tumor
-1.6
131
Tumor
-1.7
743
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.