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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COL4A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
347.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
286.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
242.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
240.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
238.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
231.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
207.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
205.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
201.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
173.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
166.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
162.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
159.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
155.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
155.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
154.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
153.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
153.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
151.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
146.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
139.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
137.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
137.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
136.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
130.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
128.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
128.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
123.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
116.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
116.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
115.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
115.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
113.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
113.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
113.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
107.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
106.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
105.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
101.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
101.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
96.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
96.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
95.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
94.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
94.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
93.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
91.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
89.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
89.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
89.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
88.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
84.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
81.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
81.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
81.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
80.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
79.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
78.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
77.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
75.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
75.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
75.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
75.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
74.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
73.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
73.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
73.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
72.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
72.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
70.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
69.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
69.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
69.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
68.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
67.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
67.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
65.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
65.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
65.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
64.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
63.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
63.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
63.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
62.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
62.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
61.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
61.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
61.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
60.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
59.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
58.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
57.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
57.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
57.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
56.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
56.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
56.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
55.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
55.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
55.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
53.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
52.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
51.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
50.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
48.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
48.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
46.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
46.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
44.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
43.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
43.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
41.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
41.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
40.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
38.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
36.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
35.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
32.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COL4A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.0
Number of samples
231
Samples
Sample
Description
TPM
DO50800
0 years, male, NA, stage:2, alive, 510 days
411.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
295.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
202.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
193.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
185.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
177.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
170.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
167.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
153.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
150.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
147.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
146.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
137.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
119.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
118.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
112.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
111.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
111.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
110.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
110.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
110.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
109.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
104.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
103.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
103.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
103.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
102.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
98.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
94.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
92.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
91.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
91.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
90.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
89.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
88.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
87.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
87.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
85.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
84.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
83.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
83.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
82.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
81.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
79.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
79.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
76.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
73.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
71.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
69.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
69.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
68.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
66.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
64.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
62.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
61.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
61.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
61.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
56.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
55.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
54.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
54.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
53.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
52.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
52.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
52.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
51.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
51.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
50.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
50.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
50.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
49.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
49.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
49.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
48.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
47.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
44.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
44.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
42.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
41.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
40.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
34.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
27.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.2
185
Tumor
1.2
823
Tumor
1.2
715
Tumor
0.9
383
Tumor
0.9
375
Tumor
0.8
455
Tumor
0.8
817
Tumor
0.8
671
Tumor
0.7
311
Tumor
0.7
877
Tumor
0.7
975
Tumor
0.7
981
Tumor
0.6
161
Tumor
0.6
421
Tumor
0.6
647
Tumor
0.6
192
Normal
0.6
1045
Tumor
0.6
545
Tumor
0.5
195
Tumor
0.5
883
Tumor
0.5
1015
Tumor
0.5
881
Tumor
0.5
977
Tumor
0.5
327
Tumor
0.5
461
Tumor
0.5
367
Tumor
0.5
223
Tumor
0.5
141
Tumor
0.5
917
Tumor
0.5
213
Tumor
0.4
813
Tumor
0.4
538
Normal
0.4
425
Tumor
0.4
913
Tumor
0.4
563
Tumor
0.4
491
Tumor
0.4
385
Tumor
0.4
685
Tumor
0.4
261
Tumor
0.4
1043
Tumor
0.3
627
Tumor
0.3
963
Tumor
0.3
874
Normal
0.3
743
Tumor
0.3
137
Tumor
0.3
697
Tumor
0.3
785
Tumor
0.3
171
Tumor
0.3
363
Tumor
0.3
467
Tumor
0.3
451
Tumor
0.3
741
Tumor
0.3
615
Tumor
0.3
915
Tumor
0.3
341
Tumor
0.2
525
Tumor
0.2
113
Tumor
0.2
146
Normal
0.2
921
Tumor
0.2
925
Tumor
0.2
365
Tumor
0.2
483
Tumor
0.2
353
Tumor
0.2
943
Tumor
0.2
361
Tumor
0.2
297
Tumor
0.2
395
Tumor
0.2
447
Tumor
0.2
391
Tumor
0.2
755
Tumor
0.2
744
Normal
0.2
814
Normal
0.2
277
Tumor
0.2
965
Tumor
0.2
937
Tumor
0.2
867
Tumor
0.2
463
Tumor
0.2
331
Tumor
0.2
465
Tumor
0.1
435
Tumor
0.1
344
Normal
0.1
145
Tumor
0.1
112
Tumor
0.1
423
Tumor
0.1
124
Normal
0.1
217
Tumor
0.1
517
Tumor
0.1
914
Normal
0.1
553
Tumor
0.1
492
Normal
0.1
362
Normal
0.1
211
Tumor
0.1
515
Tumor
0.1
982
Normal
0.1
188
Normal
0.1
857
Tumor
0.1
536
Normal
0.1
911
Tumor
0.1
433
Tumor
0.1
745
Tumor
0.1
923
Tumor
0.0
672
Normal
0.0
355
Tumor
0.0
268
Normal
0.0
861
Tumor
0.0
1025
Tumor
0.0
695
Tumor
0.0
214
Normal
0.0
1041
Tumor
0.0
187
Tumor
0.0
135
Tumor
0.0
126
Normal
0.0
368
Normal
0.0
431
Tumor
0.0
777
Tumor
0.0
427
Tumor
0.0
392
Normal
0.0
878
Normal
0.0
635
Tumor
0.0
394
Normal
0.0
386
Normal
0.0
186
Normal
0.0
617
Tumor
0.0
471
Tumor
0.0
271
Tumor
0.0
816
Normal
0.0
131
Tumor
0.0
916
Normal
0.0
464
Normal
0.0
354
Normal
0.0
557
Tumor
0.0
498
Normal
0.0
665
Tumor
-0.1
493
Tumor
-0.1
127
Tumor
-0.1
231
Tumor
-0.1
477
Tumor
-0.1
473
Tumor
-0.1
376
Normal
-0.1
1028
Normal
-0.1
191
Tumor
-0.1
393
Tumor
-0.1
727
Tumor
-0.1
642
Normal
-0.1
422
Normal
-0.1
713
Tumor
-0.1
172
Normal
-0.1
257
Tumor
-0.1
384
Normal
-0.1
138
Normal
-0.1
366
Normal
-0.1
228
Normal
-0.1
456
Normal
-0.1
1031
Tumor
-0.1
466
Normal
-0.1
956
Normal
-0.1
434
Normal
-0.1
388
Normal
-0.1
868
Normal
-0.2
535
Tumor
-0.2
136
Normal
-0.2
574
Normal
-0.2
132
Normal
-0.2
1013
Tumor
-0.2
342
Normal
-0.2
312
Normal
-0.2
413
Tumor
-0.2
468
Normal
-0.2
737
Tumor
-0.2
142
Normal
-0.2
415
Tumor
-0.2
196
Normal
-0.2
364
Normal
-0.2
444
Normal
-0.2
258
Normal
-0.2
851
Tumor
-0.2
416
Normal
-0.2
1027
Tumor
-0.2
262
Normal
-0.2
478
Normal
-0.2
571
Tumor
-0.2
272
Normal
-0.2
636
Normal
-0.2
221
Tumor
-0.2
162
Normal
-0.2
863
Tumor
-0.2
967
Tumor
-0.2
474
Normal
-0.2
111
Normal
-0.3
487
Tumor
-0.3
147
Tumor
-0.3
976
Normal
-0.3
227
Tumor
-0.3
396
Normal
-0.3
357
Tumor
-0.3
952
Normal
-0.3
411
Tumor
-0.3
957
Tumor
-0.3
222
Normal
-0.3
746
Normal
-0.3
513
Tumor
-0.3
387
Tumor
-0.3
443
Tumor
-0.3
618
Normal
-0.3
852
Normal
-0.3
884
Normal
-0.3
224
Normal
-0.3
1016
Normal
-0.3
328
Normal
-0.3
984
Normal
-0.3
424
Normal
-0.3
218
Normal
-0.3
278
Normal
-0.3
873
Tumor
-0.3
445
Tumor
-0.3
267
Tumor
-0.3
778
Normal
-0.3
882
Normal
-0.3
414
Normal
-0.3
446
Normal
-0.3
148
Normal
-0.3
358
Normal
-0.3
497
Tumor
-0.3
212
Normal
-0.3
924
Normal
-0.3
426
Normal
-0.4
554
Normal
-0.4
123
Tumor
-0.4
452
Normal
-0.4
352
Normal
-0.4
864
Normal
-0.4
724
Normal
-0.4
313
Tumor
-0.4
284
Normal
-0.4
1044
Normal
-0.4
742
Normal
-0.4
114
Normal
-0.4
954
Normal
-0.4
573
Tumor
-0.4
564
Normal
-0.4
472
Normal
-0.4
494
Normal
-0.4
428
Normal
-0.4
918
Normal
-0.4
662
Normal
-0.4
912
Normal
-0.4
721
Tumor
-0.4
738
Normal
-0.4
128
Normal
-0.4
412
Normal
-0.4
983
Tumor
-0.4
955
Tumor
-0.4
862
Normal
-0.4
436
Normal
-0.5
432
Normal
-0.5
516
Normal
-0.5
664
Normal
-0.5
666
Normal
-0.5
728
Normal
-0.5
448
Normal
-0.5
567
Tumor
-0.5
332
Normal
-0.5
716
Normal
-0.5
481
Tumor
-0.5
686
Normal
-0.5
558
Normal
-0.5
546
Normal
-0.5
526
Normal
-0.5
1021
Tumor
-0.5
696
Normal
-0.5
722
Normal
-0.5
527
Tumor
-0.5
462
Normal
-0.5
818
Normal
-0.5
232
Normal
-0.5
958
Normal
-0.5
125
Tumor
-0.5
286
Normal
-0.5
641
Tumor
-0.5
866
Normal
-0.5
953
Tumor
-0.5
1014
Normal
-0.5
786
Normal
-0.5
488
Normal
-0.5
537
Tumor
-0.5
858
Normal
-0.5
938
Normal
-0.5
285
Tumor
-0.5
968
Normal
-0.5
628
Normal
-0.6
356
Normal
-0.6
1042
Normal
-0.6
951
Tumor
-0.6
572
Normal
-0.6
533
Tumor
-0.6
523
Tumor
-0.6
568
Normal
-0.6
922
Normal
-0.6
698
Normal
-0.6
978
Normal
-0.6
314
Normal
-0.6
926
Normal
-0.6
534
Normal
-0.6
944
Normal
-0.6
966
Normal
-0.6
283
Tumor
-0.6
824
Normal
-0.6
528
Normal
-0.6
648
Normal
-0.7
723
Tumor
-0.7
524
Normal
-0.7
518
Normal
-0.7
298
Normal
-0.7
1032
Normal
-0.7
1022
Normal
-0.7
756
Normal
-0.7
484
Normal
-0.7
482
Normal
-0.7
865
Tumor
-0.7
1046
Normal
-0.7
964
Normal
-0.8
351
Tumor
-0.8
1026
Normal
-0.8
815
Tumor
-0.8
616
Normal
-0.8
514
Normal
-0.8
661
Tumor
-0.9
714
Normal
-0.9
663
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
