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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:96.6 nTPM
HPA Brain:133.1 nTPM
GTEx:96.6 nTPM
FANTOM5:489.2 Scaled Tags Per Million
Pig:191.2 nTPM
Mouse:160.7 nTPM
Allen mouse:18.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.1
Sample id Sample description nTPM
Amygdala
nTPM: 116.0
2814 Male, age 76, right hemisphere 155.8
1987 Female, age 91, left hemisphere 128.1
2517 Female, age 94, left hemisphere 110.7
2695 Female, age 67, right hemisphere 97.0
2514 Male, age 75, right hemisphere 88.3
Basal amygdala
nTPM: 127.7
2243 Female, age 91, right hemisphere 175.7
1955 Male, age 76, both hemispheres 150.5
2110 Male, age 80, left hemisphere 135.9
2685 Female, age 94, left hemisphere 128.6
2609 Male, age 75, right hemisphere 94.2
2827 Female, age 67, right hemisphere 81.4
Central amygdala
nTPM: 127.6
1905 Male, age 76, both hemispheres 154.1
2239 Male, age 80, left hemisphere 152.0
2701 Female, age 91, right hemisphere 124.8
2826 Female, age 94, left hemisphere 113.6
2515 Male, age 75, right hemisphere 93.5
Corticomedial amygdala
nTPM: 133.1
2829 Male, age 80, left hemisphere 154.4
2242 Female, age 91, right hemisphere 149.6
2535 Female, age 67, right hemisphere 146.8
2429 Female, age 94, left hemisphere 135.3
2240 Male, age 76, both hemispheres 128.9
2428 Male, age 75, right hemisphere 83.8
Lateral amygdala
nTPM: 111.4
2534 Female, age 94, left hemisphere 154.1
1883 Male, age 76, both hemispheres 142.7
2255 Female, age 91, right hemisphere 110.1
2516 Male, age 75, right hemisphere 101.7
2256 Male, age 80, left hemisphere 95.5
2830 Female, age 67, right hemisphere 64.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 96.6
Samples: 181

Max nTPM: 187.7
Min nTPM: 39.9
Std nTPM: 28.2
Median nTPM: 91.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 187.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 169.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 167.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 164.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 164.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 161.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 154.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 150.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 145.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 144.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 143.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 142.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 142.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 141.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 141.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 138.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 137.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 134.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 132.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 132.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 131.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 130.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 129.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 129.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 129.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 128.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 128.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 128.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 126.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 126.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 126.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 126.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 125.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 125.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 124.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 123.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 122.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 120.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 120.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 119.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 118.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 118.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 117.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 114.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 113.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 112.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 112.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 112.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 112.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 111.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 111.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 110.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 110.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 110.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 110.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 109.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 108.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 107.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 107.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 106.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 104.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 104.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 102.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 101.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 100.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 100.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 100.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 100.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 99.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 99.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 98.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 98.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 96.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 96.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 96.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 96.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 95.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 95.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 94.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 94.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 94.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 94.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 92.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 92.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 92.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 91.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 91.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 90.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 90.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 90.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 90.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 90.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 89.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 89.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 88.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 87.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 87.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 87.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 87.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 86.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 86.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 85.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 85.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 85.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 85.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 84.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 83.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 83.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 83.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 83.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 83.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 82.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 81.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 80.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 80.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 79.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 79.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 79.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 78.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 78.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 78.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 78.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 77.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 76.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 75.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 75.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 75.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 75.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 75.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 75.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 74.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 74.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 73.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 73.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 73.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 72.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 72.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 72.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 72.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 72.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 72.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 71.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 71.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 70.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 70.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 69.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 69.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 69.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 69.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 68.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 68.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 67.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 67.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 66.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 65.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 65.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 63.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 63.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 63.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 62.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 59.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 58.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 55.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 52.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 51.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 51.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 51.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 49.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 41.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 39.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

489.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 489.2
FF:10151-102I7 76 years, female 489.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.2
Pig sample Sample description nTPM
Amygdala
nTPM: 191.2
Samples: 4

Max nTPM: 259.2
Min nTPM: 133.3
Sample A Female 259.2
Sample B Female 133.3
Sample C Male 184.0
Sample D Male 188.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 160.7
Samples: 4

Max nTPM: 162.8
Min nTPM: 158.0
Sample A Male 162.8
Sample B Male 158.0
Sample C Female 160.5
Sample D Female 161.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.9
79556696 Antisense, RP_071204_01_D02, Mouse strain C57BL/6J (56 days, male) 18.9
80525654 Antisense, RP_071204_01_D02, Mouse strain C57BL/6J (56 days, male) 12.7

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