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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
91.3
nTPM
HPA Brain:
176.7
nTPM
GTEx:
91.3
nTPM
FANTOM5:
513.5
Scaled Tags Per Million
Pig:
230.6
nTPM
Mouse:
154.1
nTPM
Allen mouse:
18.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA069524
Antibody HPA069570
Antibody CAB000151
Antibody CAB072344
Glial cells
Not detected
Not detected
Not detected
High
Neuronal cells
Not detected
Low
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
176.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 141.2
2621
Female, age 67, right hemisphere
176.3
1855
Male, age 76, left hemisphere
156.9
1898
Male, age 80, left hemisphere
154.9
2148
Female, age 91, left hemisphere
132.4
1911
Female, age 85, right hemisphere
118.3
2529
Female, age 94, left hemisphere
108.4
Dentate gyrus nTPM: 140.0
2530
Female, age 94, left hemisphere
164.9
1927
Female, age 91, both hemispheres
164.7
2010
Male, age 76, both hemispheres
143.2
2246
Female, age 85, both hemispheres
130.7
2531
Female, age 67, both hemispheres
128.3
2528
Male, age 74, both hemispheres
108.2
Entorhinal gyrus nTPM: 147.0
2764
Male, age 80, right hemisphere
171.1
2613
Female, age 94, left hemisphere
166.2
1938
Female, age 85, left hemisphere
154.1
1787
Male, age 76, left hemisphere
152.0
2117
Female, age 91, right hemisphere
121.6
2686
Male, age 75, right hemisphere
117.0
Hippocampus, CA1 nTPM: 147.8
2749
Male, age 80, left hemisphere
187.6
1873
Female, age 85, both hemispheres
170.0
2527
Male, age 74, both hemispheres
143.2
2082
Female, age 91, right hemisphere
133.4
2045
Male, age 76, both hemispheres
105.0
Hippocampus, CA2 nTPM: 138.0
1892
Male, age 76, both hemispheres
164.7
1963
Male, age 80, left hemisphere
154.4
2437
Female, age 94, left hemisphere
153.8
1940
Female, age 85, left hemisphere
136.3
2113
Female, age 91, right hemisphere
122.3
2249
Male, age 74, both hemispheres
96.7
Hippocampus, CA3 nTPM: 135.2
2620
Female, age 94, left hemisphere
198.0
2861
Female, age 67, both hemispheres
145.5
2137
Male, age 80, left hemisphere
126.4
1891
Female, age 85, both hemispheres
122.2
2436
Male, age 74, both hemispheres
110.6
1867
Male, age 76, both hemispheres
108.6
Parahippocampal cortex nTPM: 158.7
2622
Female, age 67, right hemisphere
183.4
2245
Female, age 91, both hemispheres
182.3
1850
Male, age 80, both hemispheres
176.6
2532
Female, age 72, left hemisphere
170.4
1990
Female, age 91, right hemisphere
166.2
2250
Female, age 67, right hemisphere
157.8
1933
Female, age 85, both hemispheres
152.4
2693
Female, age 94, both hemispheres
138.3
2018
Male, age 76, both hemispheres
131.9
2692
Male, age 74, both hemispheres
127.3
Perirhinal gyrus nTPM: 176.7
1847
Female, age 91, left hemisphere
219.7
2521
Female, age 94, right hemisphere
180.6
1841
Female, age 85, right hemisphere
170.4
1794
Male, age 80, right hemisphere
169.9
2848
Male, age 76, right hemisphere
143.0
Subiculum nTPM: 124.3
1977
Female, age 85, both hemispheres
142.2
2438
Female, age 94, left hemisphere
141.3
1901
Male, age 80, both hemispheres
131.9
2619
Male, age 74, both hemispheres
122.9
2042
Male, age 76, both hemispheres
108.2
2729
Female, age 91, right hemisphere
99.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 91.3
Samples: 197
Max nTPM: 172.4
Min nTPM: 14.6
Std nTPM: 29.1
Median nTPM: 88.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
172.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
172.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
157.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
155.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
152.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
150.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
150.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
141.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
141.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
140.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
140.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
138.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
137.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
136.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
135.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
132.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
131.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
131.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
131.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
130.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
129.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
129.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
129.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
128.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
128.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
128.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
127.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
127.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
127.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
126.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
124.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
122.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
122.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
121.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
119.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
119.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
118.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
118.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
117.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
117.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
116.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
116.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
116.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
115.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
115.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
113.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
113.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
113.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
112.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
112.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
112.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
112.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
111.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
111.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
111.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
110.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
109.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
109.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
109.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
108.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
108.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
107.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
107.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
105.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
105.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
105.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
105.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
104.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
104.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
103.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
102.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
102.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
102.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
101.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
100.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
99.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
99.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
98.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
96.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
96.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
96.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
94.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
92.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
92.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
92.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
91.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
91.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
91.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
90.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
90.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
89.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
89.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
89.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
89.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
89.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
88.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
88.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
88.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
88.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
87.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
86.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
86.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
85.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
84.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
84.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
83.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
83.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
83.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
82.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
81.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
81.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
81.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
81.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
81.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
80.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
79.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
79.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
79.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
79.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
79.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
79.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
79.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
78.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
78.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
77.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
77.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
76.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
76.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
76.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
75.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
75.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
75.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
74.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
74.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
73.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
73.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
72.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
72.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
72.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
71.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
71.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
71.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
70.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
70.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
70.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
69.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
69.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
68.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
68.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
68.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
67.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
67.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
67.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
66.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
66.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
66.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
66.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
65.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
65.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
65.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
64.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
64.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
64.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
63.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
63.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
62.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
62.2
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
61.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
61.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
61.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
61.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
60.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
60.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
59.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
57.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
57.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
55.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
55.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
55.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
54.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
53.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
53.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
53.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
52.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
51.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
51.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
51.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
49.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
49.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
48.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
45.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
44.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
43.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
41.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
34.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
32.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
14.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
154.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 154.1
Samples: 4
Max nTPM: 158.5
Min nTPM: 144.7
Sample A
Male
155.9
Sample B
Male
157.4
Sample C
Female
144.7
Sample D
Female
158.5
Hippocampal formation nTPM: 151.0
Samples: 4
Max nTPM: 156.8
Min nTPM: 139.3
Sample A
Male
151.4
Sample B
Male
156.4
Sample C
Female
156.8
Sample D
Female
139.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.