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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THBS2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
75.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
36.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THBS2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
149.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
111.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
109.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
97.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
92.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
91.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
78.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
77.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
74.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
71.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
64.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
61.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
60.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
55.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
54.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
53.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
50.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
47.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
44.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
40.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
455
Tumor
2.8
355
Tumor
2.6
817
Tumor
2.6
375
Tumor
2.5
297
Tumor
2.3
671
Tumor
2.3
545
Tumor
2.2
421
Tumor
2.2
185
Tumor
2.1
975
Tumor
2.1
823
Tumor
2.1
385
Tumor
2.1
535
Tumor
1.9
877
Tumor
1.9
343
Tumor
1.9
881
Tumor
1.8
813
Tumor
1.7
223
Tumor
1.7
311
Tumor
1.7
145
Tumor
1.6
921
Tumor
1.6
483
Tumor
1.6
135
Tumor
1.4
563
Tumor
1.4
883
Tumor
1.4
213
Tumor
1.3
427
Tumor
1.2
697
Tumor
1.2
493
Tumor
1.2
211
Tumor
1.2
187
Tumor
1.1
917
Tumor
1.0
461
Tumor
1.0
161
Tumor
0.9
191
Tumor
0.9
713
Tumor
0.9
527
Tumor
0.8
447
Tumor
0.8
331
Tumor
0.8
365
Tumor
0.8
715
Tumor
0.8
277
Tumor
0.8
137
Tumor
0.8
141
Tumor
0.7
943
Tumor
0.7
383
Tumor
0.7
857
Tumor
0.7
363
Tumor
0.6
983
Tumor
0.6
463
Tumor
0.6
525
Tumor
0.5
785
Tumor
0.5
1045
Tumor
0.5
425
Tumor
0.5
963
Tumor
0.4
341
Tumor
0.4
665
Tumor
0.4
433
Tumor
0.4
491
Tumor
0.2
515
Tumor
0.2
395
Tumor
0.1
492
Normal
0.1
627
Tumor
0.0
814
Normal
0.0
913
Tumor
0.0
413
Tumor
0.0
471
Tumor
0.0
672
Normal
-0.1
536
Normal
-0.1
863
Tumor
-0.1
217
Tumor
-0.1
923
Tumor
-0.1
685
Tumor
-0.1
647
Tumor
-0.2
195
Tumor
-0.2
498
Normal
-0.2
361
Tumor
-0.2
283
Tumor
-0.3
387
Tumor
-0.3
473
Tumor
-0.3
467
Tumor
-0.3
867
Tumor
-0.3
327
Tumor
-0.4
298
Normal
-0.4
1015
Tumor
-0.4
925
Tumor
-0.4
617
Tumor
-0.4
313
Tumor
-0.4
721
Tumor
-0.4
356
Normal
-0.4
312
Normal
-0.4
538
Normal
-0.4
641
Tumor
-0.5
478
Normal
-0.5
666
Normal
-0.5
344
Normal
-0.5
953
Tumor
-0.5
376
Normal
-0.5
391
Tumor
-0.5
818
Normal
-0.5
976
Normal
-0.5
367
Tumor
-0.5
573
Tumor
-0.6
224
Normal
-0.6
497
Tumor
-0.6
444
Normal
-0.6
278
Normal
-0.6
553
Tumor
-0.6
861
Tumor
-0.6
695
Tumor
-0.6
741
Tumor
-0.6
546
Normal
-0.6
332
Normal
-0.6
353
Tumor
-0.6
882
Normal
-0.6
364
Normal
-0.6
192
Normal
-0.6
824
Normal
-0.6
494
Normal
-0.7
456
Normal
-0.7
423
Tumor
-0.7
328
Normal
-0.7
186
Normal
-0.7
428
Normal
-0.7
852
Normal
-0.7
422
Normal
-0.7
314
Normal
-0.7
368
Normal
-0.7
615
Tumor
-0.7
214
Normal
-0.7
816
Normal
-0.8
188
Normal
-0.8
743
Tumor
-0.8
443
Tumor
-0.8
858
Normal
-0.8
127
Tumor
-0.8
468
Normal
-0.9
221
Tumor
-0.9
415
Tumor
-0.9
414
Normal
-0.9
146
Normal
-0.9
452
Normal
-0.9
916
Normal
-0.9
464
Normal
-0.9
698
Normal
-0.9
724
Normal
-0.9
412
Normal
-0.9
517
Tumor
-0.9
424
Normal
-0.9
426
Normal
-0.9
228
Normal
-0.9
284
Normal
-0.9
448
Normal
-0.9
286
Normal
-0.9
884
Normal
-1.0
1025
Tumor
-1.0
873
Tumor
-1.0
484
Normal
-1.0
664
Normal
-1.0
384
Normal
-1.0
271
Tumor
-1.0
431
Tumor
-1.0
534
Normal
-1.0
662
Normal
-1.0
1028
Normal
-1.0
554
Normal
-1.0
394
Normal
-1.0
386
Normal
-1.0
815
Tumor
-1.1
212
Normal
-1.1
537
Tumor
-1.1
488
Normal
-1.1
722
Normal
-1.1
138
Normal
-1.1
466
Normal
-1.1
416
Normal
-1.1
434
Normal
-1.1
148
Normal
-1.1
362
Normal
-1.1
268
Normal
-1.1
648
Normal
-1.1
132
Normal
-1.1
366
Normal
-1.1
1044
Normal
-1.1
136
Normal
-1.1
528
Normal
-1.1
922
Normal
-1.1
451
Tumor
-1.1
162
Normal
-1.1
172
Normal
-1.1
354
Normal
-1.2
737
Tumor
-1.2
984
Normal
-1.2
142
Normal
-1.2
147
Tumor
-1.2
477
Tumor
-1.2
388
Normal
-1.2
1046
Normal
-1.2
716
Normal
-1.2
964
Normal
-1.2
171
Tumor
-1.2
912
Normal
-1.2
567
Tumor
-1.2
196
Normal
-1.2
342
Normal
-1.2
628
Normal
-1.2
958
Normal
-1.2
914
Normal
-1.2
786
Normal
-1.2
642
Normal
-1.2
714
Normal
-1.3
686
Normal
-1.3
968
Normal
-1.3
878
Normal
-1.3
396
Normal
-1.3
526
Normal
-1.3
755
Tumor
-1.3
222
Normal
-1.3
618
Normal
-1.3
966
Normal
-1.3
227
Tumor
-1.3
285
Tumor
-1.3
977
Tumor
-1.3
1042
Normal
-1.3
982
Normal
-1.3
967
Tumor
-1.3
954
Normal
-1.3
445
Tumor
-1.3
482
Normal
-1.3
524
Normal
-1.3
465
Tumor
-1.3
392
Normal
-1.4
777
Tumor
-1.4
636
Normal
-1.4
1031
Tumor
-1.4
874
Normal
-1.4
1027
Tumor
-1.4
218
Normal
-1.4
661
Tumor
-1.4
1043
Tumor
-1.4
918
Normal
-1.4
944
Normal
-1.4
124
Normal
-1.4
262
Normal
-1.4
696
Normal
-1.4
474
Normal
-1.4
564
Normal
-1.4
557
Tumor
-1.4
616
Normal
-1.4
924
Normal
-1.4
351
Tumor
-1.4
126
Normal
-1.4
358
Normal
-1.5
352
Normal
-1.5
472
Normal
-1.5
558
Normal
-1.5
131
Tumor
-1.5
926
Normal
-1.5
778
Normal
-1.5
393
Tumor
-1.5
481
Tumor
-1.5
663
Tumor
-1.5
1032
Normal
-1.6
411
Tumor
-1.6
113
Tumor
-1.6
533
Tumor
-1.6
978
Normal
-1.6
635
Tumor
-1.6
574
Normal
-1.6
1016
Normal
-1.6
915
Tumor
-1.6
756
Normal
-1.6
462
Normal
-1.6
1041
Tumor
-1.6
952
Normal
-1.6
851
Tumor
-1.6
513
Tumor
-1.6
232
Normal
-1.6
261
Tumor
-1.6
957
Tumor
-1.6
1014
Normal
-1.6
868
Normal
-1.6
956
Normal
-1.7
231
Tumor
-1.7
111
Normal
-1.7
516
Normal
-1.7
432
Normal
-1.7
272
Normal
-1.7
357
Tumor
-1.7
911
Tumor
-1.7
965
Tumor
-1.7
1026
Normal
-1.7
727
Tumor
-1.7
746
Normal
-1.7
114
Normal
-1.7
571
Tumor
-1.8
446
Normal
-1.8
744
Normal
-1.8
125
Tumor
-1.8
568
Normal
-1.8
951
Tumor
-1.8
436
Normal
-1.9
572
Normal
-1.9
518
Normal
-1.9
865
Tumor
-1.9
487
Tumor
-1.9
866
Normal
-1.9
745
Tumor
-1.9
128
Normal
-1.9
864
Normal
-1.9
257
Tumor
-1.9
981
Tumor
-1.9
112
Tumor
-1.9
514
Normal
-1.9
938
Normal
-2.0
723
Tumor
-2.0
1013
Tumor
-2.0
523
Tumor
-2.0
258
Normal
-2.0
862
Normal
-2.0
738
Normal
-2.1
1022
Normal
-2.1
742
Normal
-2.1
955
Tumor
-2.1
728
Normal
-2.1
1021
Tumor
-2.2
267
Tumor
-2.2
435
Tumor
-2.3
937
Tumor
-2.3
123
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
