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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
56.0
nTPM
FANTOM5:
71.9
Scaled Tags Per Million
Pig:
7.1
nTPM
Allen mouse:
0.2
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 31.8
2188
Female, age 91, both hemispheres
43.3
2090
Male, age 80, both hemispheres
33.7
2301
Female, age 85, both hemispheres
27.6
1984
Male, age 76, both hemispheres
22.5
Dorsal cochlear nucleus nTPM: 37.6
2058
Male, age 76, both hemispheres
48.8
2378
Male, age 80, both hemispheres
42.9
2370
Male, age 61, both hemispheres
39.2
2187
Female, age 91, both hemispheres
28.8
2802
Male, age 74, right hemisphere
28.2
Dorsal tegmental nucleus nTPM: 38.1
2083
Male, age 80, both hemispheres
49.0
1936
Male, age 76, left hemisphere
43.2
2326
Male, age 74, both hemispheres
32.8
2358
Male, age 61, both hemispheres
27.6
Dorsolateral tegmental area nTPM: 35.7
2654
Male, age 80, both hemispheres
45.7
2337
Male, age 61, both hemispheres
33.6
2141
Male, age 76, both hemispheres
33.5
2751
Female, age 85, both hemispheres
33.1
2360
Male, age 74, both hemispheres
32.4
Kolliker-Fuse nucleus nTPM: 56.0
2315
Male, age 76, right hemisphere
85.2
2793
Female, age 91, left hemisphere
44.0
2163
Male, age 80, both hemispheres
38.8
Lateral lemniscal nuclei nTPM: 32.1
2746
Female, age 85, left hemisphere
41.0
2320
Female, age 91, left hemisphere
36.9
2453
Male, age 74, right hemisphere
33.1
2036
Male, age 80, both hemispheres
25.5
2169
Male, age 76, both hemispheres
24.1
Lateral parabrachial nucleus nTPM: 43.6
2792
Male, age 76, both hemispheres
51.2
2139
Female, age 85, right hemisphere
48.9
2013
Male, age 80, both hemispheres
44.0
2790
Male, age 61, both hemispheres
30.4
Lateral vestibular nucleus nTPM: 38.1
2311
Male, age 80, both hemispheres
39.4
2184
Male, age 76, both hemispheres
36.9
Locus coeruleus nTPM: 28.5
1980
Male, age 76, both hemispheres
43.1
2162
Male, age 80, both hemispheres
30.5
2317
Female, age 72, unknown
29.6
2123
Female, age 91, both hemispheres
25.5
2014
Male, age 55, unknown
24.1
2788
Male, age 74, unknown
23.5
2720
Male, age 74, both hemispheres
23.0
Medial parabrachial nucleus nTPM: 34.1
2786
Male, age 76, both hemispheres
42.8
2156
Male, age 61, both hemispheres
38.8
2854
Male, age 80, both hemispheres
34.2
2170
Female, age 91, both hemispheres
28.4
2463
Female, age 85, right hemisphere
26.3
Medial periolivary nuclei nTPM: 37.5
2791
Male, age 74, right hemisphere
52.7
2458
Female, age 91, both hemispheres
39.4
2081
Male, age 80, both hemispheres
37.2
2171
Female, age 85, both hemispheres
29.7
2063
Male, age 76, both hemispheres
28.7
Motor facial nucleus nTPM: 35.1
2365
Male, age 74, right hemisphere
45.4
2126
Male, age 61, both hemispheres
40.6
2697
Female, age 85, both hemispheres
37.6
2795
Female, age 91, both hemispheres
33.4
2327
Male, age 80, both hemispheres
28.5
2062
Male, age 76, both hemispheres
25.2
Motor trigeminal nucleus nTPM: 34.7
2309
Male, age 76, both hemispheres
48.5
2335
Male, age 61, both hemispheres
38.9
2321
Female, age 91, both hemispheres
32.1
2079
Male, age 80, both hemispheres
28.1
2560
Male, age 74, both hemispheres
25.7
Nuclei of the trapezoid body nTPM: 33.2
2368
Female, age 91, both hemispheres
39.5
2159
Male, age 61, both hemispheres
36.7
2166
Male, age 80, both hemispheres
32.8
1983
Male, age 76, both hemispheres
29.5
2735
Female, age 85, both hemispheres
27.4
Nucleus raphe magnus nTPM: 34.9
2459
Female, age 91, both hemispheres
44.4
2051
Male, age 76, both hemispheres
39.8
2455
Male, age 74, both hemispheres
39.0
2328
Male, age 80, both hemispheres
37.1
2172
Female, age 85, both hemispheres
26.0
2160
Male, age 61, both hemispheres
23.4
Paramedian reticular nucleus nTPM: 41.3
2313
Male, age 61, both hemispheres
49.3
2057
Male, age 80, both hemispheres
41.0
2050
Female, age 85, both hemispheres
37.6
2052
Male, age 76, both hemispheres
37.3
Pedunculopontine tegmental nucleus nTPM: 33.0
2334
Male, age 80, both hemispheres
46.2
1921
Female, age 85, both hemispheres
29.5
2338
Male, age 61, both hemispheres
23.3
Pontine nuclei nTPM: 32.8
2109
Female, age 72, unknown
38.8
2115
Male, age 80, left hemisphere
37.2
2319
Female, age 91, both hemispheres
34.9
2787
Female, age 85, both hemispheres
34.1
2454
Male, age 74, left hemisphere
33.3
2727
Male, age 61, right hemisphere
31.1
1863
Male, age 55, unknown
29.3
1968
Male, age 76, left hemisphere
23.8
Pontine raphe nucleus nTPM: 34.7
2853
Male, age 76, midline
35.6
2122
Female, age 85, midline
33.9
Posteroventral cochlear nucleus nTPM: 42.2
2070
Male, age 76, both hemispheres
58.8
2752
Female, age 85, both hemispheres
40.6
2341
Male, age 80, both hemispheres
39.4
2135
Female, age 91, both hemispheres
38.9
2371
Male, age 61, both hemispheres
33.2
Principal sensory trigeminal nucleus nTPM: 30.5
2324
Male, age 76, both hemispheres
40.5
2367
Female, age 91, left hemisphere
34.2
2158
Male, age 61, both hemispheres
23.8
2008
Male, age 80, left hemisphere
23.7
Reticular pontine nucleus, caudal nTPM: 34.6
2457
Female, age 91, both hemispheres
42.0
2092
Male, age 76, both hemispheres
39.0
2332
Male, age 80, right hemisphere
29.9
2559
Male, age 74, both hemispheres
27.5
Reticular pontine nucleus, oral nTPM: 34.5
1939
Male, age 80, both hemispheres
39.3
2366
Female, age 91, both hemispheres
34.5
2167
Male, age 76, both hemispheres
33.1
2361
Male, age 74, both hemispheres
33.1
2012
Female, age 85, both hemispheres
32.4
Reticulotegmental nucleus nTPM: 36.3
2333
Male, age 80, both hemispheres
44.8
2322
Female, age 91, both hemispheres
39.8
2325
Male, age 76, both hemispheres
30.5
2452
Male, age 74, both hemispheres
30.0
Spinal trigeminal nucleus, oral nTPM: 35.2
1978
Male, age 76, both hemispheres
40.5
2164
Male, age 80, both hemispheres
34.0
2737
Female, age 85, both hemispheres
31.0
Subcoeruleus area nTPM: 31.2
2369
Female, age 85, left hemisphere
36.0
2323
Female, age 91, left hemisphere
34.1
1958
Male, age 80, both hemispheres
34.0
2451
Male, age 74, both hemispheres
28.6
2089
Male, age 76, left hemisphere
23.4
Superior olive nTPM: 36.9
2364
Male, age 74, right hemisphere
49.7
2561
Female, age 91, both hemispheres
37.1
2329
Male, age 80, right hemisphere
34.4
1875
Female, age 85, both hemispheres
33.6
2020
Male, age 76, both hemispheres
29.4
Ventral periolivary nuclei nTPM: 31.3
2023
Male, age 76, both hemispheres
33.2
2165
Male, age 80, both hemispheres
32.9
2130
Female, age 85, both hemispheres
30.9
2794
Female, age 91, left hemisphere
28.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 37.6
2840
Female, age 85, both hemispheres
48.0
2456
Female, age 91, both hemispheres
46.2
1959
Male, age 76, both hemispheres
35.5
2449
Male, age 74, both hemispheres
34.6
2161
Male, age 80, both hemispheres
34.5
2359
Male, age 61, both hemispheres
27.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.1
Pig sample
Sample description
nTPM
Pons nTPM: 7.1
Samples: 4
Max nTPM: 8.1
Min nTPM: 6.0
Sample A
Female
8.1
Sample B
Female
6.0
Sample C
Male
7.6
Sample D
Male
6.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
