MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.8 nTPM
HPA Brain:50.7 nTPM
GTEx:11.8 nTPM
FANTOM5:76.0 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:5.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
1833 Male, age 53, unknown 42.9
1870 Female, age 42, unknown 42.3
2411 Female, age 72, unknown 38.9
2828 Female, age 72, unknown 38.5
1830 Male, age 51, unknown 37.8
2586 Male, age 75, left hemisphere 34.1
2666 Male, age 74, left hemisphere 31.4
2019 Male, age 18, unknown 26.7
1827 Male, age 72, unknown 26.3
2219 Male, age 76, both hemispheres 21.4
Dorsal raphe nucleus
nTPM: 33.0
2016 Female, age 72, unknown 41.7
2750 Male, age 76, both hemispheres 37.2
1828 Male, age 53, unknown 30.5
2298 Female, age 72, unknown 28.5
2047 Male, age 72, unknown 27.0
Inferior colliculus
nTPM: 27.1
2849 Male, age 72, unknown 29.7
1848 Female, age 42, unknown 27.8
2097 Female, age 72, unknown 26.5
1890 Male, age 53, unknown 24.2
Median raphe nucleus
nTPM: 50.7
2220 Male, age 76, midline 50.7
Periaquaductal grey, anterior
nTPM: 33.7
2502 Female, age 75, unknown 39.5
1947 Male, age 18, unknown 33.6
1795 Male, age 51, unknown 28.0
Periaquaductal grey, dorsal
nTPM: 33.8
2850 Male, age 76, both hemispheres 54.9
2464 Female, age 72, unknown 31.7
1831 Male, age 72, unknown 26.7
1840 Male, age 53, unknown 22.0
Periaquaductal grey, lateral
nTPM: 37.8
2140 Male, age 76, both hemispheres 44.7
2272 Male, age 74, both hemispheres 34.9
2053 Male, age 18, unknown 33.7
Pretectal area
nTPM: 27.5
1815 Male, age 53, unknown 35.1
2825 Male, age 18, unknown 34.7
2273 Male, age 74, both hemispheres 31.0
2316 Male, age 76, right hemisphere 30.9
1817 Female, age 42, unknown 30.1
2224 Female, age 72, unknown 27.7
2667 Female, age 75, unknown 25.1
2007 Male, age 72, unknown 25.0
2407 Male, age 75, both hemispheres 23.6
1944 Female, age 72, unknown 21.9
1816 Male, age 51, unknown 17.3
Red nucleus
nTPM: 43.4
1904 Male, age 53, unknown 58.3
1954 Female, age 42, unknown 54.2
1865 Male, age 51, unknown 52.7
2503 Female, age 72, unknown 49.5
2227 Male, age 72, unknown 48.5
2769 Male, age 72, unknown 48.1
2725 Female, age 75, unknown 44.7
2823 Male, age 76, right hemisphere 41.8
1821 Female, age 72, unknown 38.8
2785 Male, age 18, unknown 38.4
2588 Male, age 74, left hemisphere 23.1
2584 Male, age 75, left hemisphere 23.0
Substantia nigra
nTPM: 29.8
2409 Female, age 72, unknown 41.0
2699 Male, age 18, unknown 39.2
1851 Male, age 51, unknown 34.8
2583 Male, age 75, right hemisphere 33.2
2590 Female, age 75, unknown 28.6
1916 Female, age 42, unknown 27.0
1889 Female, age 72, unknown 26.6
2241 Male, age 72, unknown 25.0
1941 Male, age 53, unknown 23.7
2665 Male, age 74, both hemispheres 19.3
Superior colliculus
nTPM: 30.4
1995 Male, age 72, unknown 45.7
1913 Female, age 42, unknown 43.5
2587 Male, age 74, left hemisphere 34.9
1839 Male, age 51, unknown 32.3
1796 Male, age 53, unknown 30.0
2087 Female, age 72, unknown 26.5
2261 Male, age 18, unknown 25.4
2668 Female, age 75, unknown 25.4
1895 Male, age 76, right hemisphere 21.0
2664 Male, age 75, both hemispheres 19.7
Ventral tegmental area
nTPM: 32.2
2410 Female, age 72, unknown 41.1
2218 Male, age 76, both hemispheres 34.3
1915 Female, age 42, unknown 31.4
1942 Male, age 51, unknown 31.2
2021 Male, age 53, unknown 28.0
2223 Female, age 72, unknown 27.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.8
Samples: 139

Max nTPM: 46.9
Min nTPM: 2.8
Std nTPM: 6.1
Median nTPM: 10.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 41.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 35.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 24.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 23.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 23.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 20.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 20.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 19.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 19.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 76.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.0
FF:10158-103A5 76 years, female 76.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 12.8
Sample C Male 8.6
Sample D Male 9.1
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 9.2
Min nTPM: 4.3
Sample A Female 9.2
Sample B Female 7.2
Sample C Male 5.9
Sample D Male 4.3
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 9.4
Min nTPM: 6.5
Sample B Female 7.6
Sample C Male 9.4
Sample D Male 6.5
Superior colliculi
nTPM: 8.9
Samples: 4

Max nTPM: 12.5
Min nTPM: 5.6
Sample A Female 11.4
Sample B Female 12.5
Sample C Male 5.6
Sample D Male 6.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 5.0
Sample A Male 5.0
Sample B Male 5.7
Sample C Female 5.2
Sample D Female 5.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71656137 Antisense, RP_050927_03_H11, Mouse strain C57BL/6J (56 days, male) 0.3
73929578 Antisense, RP_050927_03_H11, Mouse strain C57BL/6J (56 days, male) 0.3

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