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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFA13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
484.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3193.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1981.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1853.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1644.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1565.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1550.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1190.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1090.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1011.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1010.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
971.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
964.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
962.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
955.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
929.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
924.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
905.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
901.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
898.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
888.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
855.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
851.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
846.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
843.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
839.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
831.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
823.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
821.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
818.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
812.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
806.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
797.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
794.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
789.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
782.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
767.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
766.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
766.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
761.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
747.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
731.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
725.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
725.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
724.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
703.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
700.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
699.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
697.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
695.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
689.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
683.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
676.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
673.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
671.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
667.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
667.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
664.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
650.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
647.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
640.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
639.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
631.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
624.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
623.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
619.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
618.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
615.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
613.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
612.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
611.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
609.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
608.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
608.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
606.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
603.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
603.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
595.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
595.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
592.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
584.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
574.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
570.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
564.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
563.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
560.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
554.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
552.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
551.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
551.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
549.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
547.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
542.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
540.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
539.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
538.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
537.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
536.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
530.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
528.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
524.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
523.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
523.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
523.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
522.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
522.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
516.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
515.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
514.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
514.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
513.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
513.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
512.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
510.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
508.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
508.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
506.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
505.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
503.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
502.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
500.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
498.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
497.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
495.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
491.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
489.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
488.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
487.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
486.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
482.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
480.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
480.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
479.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
474.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
474.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
474.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
473.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
470.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
468.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
467.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
466.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
466.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
462.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
461.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
460.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
459.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
459.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
458.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
458.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
458.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
453.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
453.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
451.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
451.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
449.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
448.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
447.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
447.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
445.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
443.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
441.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
440.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
440.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
437.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
436.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
436.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
436.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
436.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
435.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
435.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
434.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
433.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
433.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
433.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
432.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
431.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
431.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
430.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
429.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
425.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
425.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
424.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
423.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
418.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
416.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
415.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
415.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
414.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
414.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
413.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
410.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
408.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
407.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
407.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
407.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
406.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
405.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
405.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
404.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
404.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
400.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
400.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
400.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
398.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
398.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
397.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
396.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
395.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
395.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
395.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
394.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
392.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
388.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
388.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
388.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
388.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
387.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
387.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
385.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
385.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
382.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
382.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
382.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
378.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
378.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
377.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
377.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
375.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
375.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
374.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
372.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
371.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
371.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
370.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
369.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
369.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
369.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
369.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
368.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
367.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
367.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
366.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
365.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
362.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
360.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
360.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
359.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
358.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
356.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
356.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
356.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
355.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
354.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
353.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
351.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
350.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
350.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
349.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
347.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
347.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
346.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
346.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
345.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
344.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
343.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
343.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
343.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
343.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
341.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
341.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
341.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
335.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
334.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
334.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
332.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
330.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
330.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
330.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
329.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
326.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
325.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
325.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
323.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
323.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
322.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
320.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
320.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
317.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
316.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
316.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
315.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
314.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
312.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
312.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
312.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
311.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
310.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
310.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
308.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
308.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
307.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
305.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
302.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
302.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
300.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
299.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
299.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
298.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
294.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
294.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
294.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
293.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
293.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
292.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
292.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
292.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
289.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
288.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
286.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
286.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
283.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
280.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
276.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
275.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
273.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
270.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
269.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
267.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
265.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
264.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
263.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
263.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
258.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
257.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
257.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
254.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
252.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
252.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
249.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
246.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
244.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
242.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
242.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
241.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
240.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
228.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
228.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
228.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
225.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
222.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
221.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
218.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
218.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
213.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
208.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
198.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
198.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
191.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
177.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
168.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
162.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
150.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFA13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
242.7
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
1569.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
1021.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
821.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
756.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
665.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
660.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
600.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
560.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
554.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
535.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
532.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
502.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
478.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
458.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
445.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
438.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
424.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
421.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
415.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
383.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
380.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
377.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
365.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
365.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
352.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
344.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
341.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
339.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
336.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
336.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
333.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
321.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
313.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
313.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
312.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
312.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
301.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
300.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
300.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
292.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
292.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
291.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
290.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
290.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
288.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
288.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
286.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
285.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
284.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
284.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
282.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
282.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
279.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
278.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
275.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
274.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
274.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
273.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
270.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
270.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
269.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
266.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
262.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
259.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
257.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
257.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
257.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
253.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
252.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
250.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
248.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
246.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
244.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
242.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
241.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
240.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
239.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
238.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
238.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
237.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
237.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
237.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
236.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
236.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
235.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
235.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
232.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
232.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
228.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
227.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
227.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
227.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
226.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
225.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
225.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
222.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
221.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
220.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
220.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
220.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
219.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
219.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
218.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
218.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
217.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
216.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
213.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
213.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
213.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
212.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
211.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
211.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
210.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
208.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
207.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
206.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
202.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
202.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
201.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
199.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
199.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
197.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
197.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
196.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
195.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
195.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
195.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
195.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
195.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
194.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
191.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
191.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
189.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
189.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
189.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
188.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
188.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
188.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
187.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
186.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
186.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
186.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
186.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
185.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
184.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
184.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
183.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
183.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
183.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
181.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
179.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
179.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
178.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
178.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
177.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
176.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
174.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
174.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
174.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
173.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
172.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
171.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
170.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
170.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
169.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
166.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
166.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
166.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
164.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
163.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
163.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
162.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
162.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
162.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
162.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
162.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
162.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
160.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
160.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
159.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
158.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
158.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
157.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
157.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
156.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
155.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
155.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
155.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
151.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
150.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
150.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
149.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
149.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
148.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
148.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
148.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
148.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
146.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
146.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
145.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
145.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
145.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
142.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
142.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
141.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
141.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
140.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
138.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
138.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
138.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
138.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
137.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
137.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
135.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
134.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
131.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
130.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
130.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
128.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
127.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
127.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
125.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
123.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
122.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
121.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
116.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
116.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
100.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
94.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
83.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
66.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
314
Normal
1.0
278
Normal
0.8
466
Normal
0.8
1041
Tumor
0.8
132
Normal
0.8
312
Normal
0.7
148
Normal
0.7
388
Normal
0.7
232
Normal
0.7
128
Normal
0.7
426
Normal
0.7
446
Normal
0.7
1043
Tumor
0.7
564
Normal
0.7
944
Normal
0.7
358
Normal
0.7
664
Normal
0.6
258
Normal
0.6
456
Normal
0.6
222
Normal
0.6
958
Normal
0.6
464
Normal
0.6
642
Normal
0.6
571
Tumor
0.6
432
Normal
0.6
912
Normal
0.6
722
Normal
0.6
713
Tumor
0.6
272
Normal
0.6
1046
Normal
0.6
648
Normal
0.6
162
Normal
0.6
914
Normal
0.6
628
Normal
0.6
636
Normal
0.6
356
Normal
0.6
451
Tumor
0.6
913
Tumor
0.6
981
Tumor
0.6
342
Normal
0.6
214
Normal
0.6
422
Normal
0.6
964
Normal
0.6
742
Normal
0.5
616
Normal
0.5
138
Normal
0.5
136
Normal
0.5
714
Normal
0.5
172
Normal
0.5
396
Normal
0.5
196
Normal
0.5
366
Normal
0.5
1014
Normal
0.5
111
Normal
0.5
1022
Normal
0.5
327
Tumor
0.5
568
Normal
0.5
267
Tumor
0.5
376
Normal
0.5
1032
Normal
0.5
723
Tumor
0.5
126
Normal
0.5
666
Normal
0.5
436
Normal
0.5
756
Normal
0.5
728
Normal
0.5
452
Normal
0.5
618
Normal
0.5
468
Normal
0.5
362
Normal
0.5
114
Normal
0.5
192
Normal
0.5
394
Normal
0.5
866
Normal
0.5
982
Normal
0.5
145
Tumor
0.5
696
Normal
0.5
462
Normal
0.5
262
Normal
0.5
127
Tumor
0.4
332
Normal
0.4
414
Normal
0.4
864
Normal
0.4
868
Normal
0.4
482
Normal
0.4
698
Normal
0.4
448
Normal
0.4
984
Normal
0.4
171
Tumor
0.4
926
Normal
0.4
572
Normal
0.4
352
Normal
0.4
328
Normal
0.4
1016
Normal
0.4
878
Normal
0.4
1028
Normal
0.4
1044
Normal
0.4
922
Normal
0.4
298
Normal
0.4
954
Normal
0.4
146
Normal
0.4
416
Normal
0.4
188
Normal
0.4
716
Normal
0.4
952
Normal
0.4
344
Normal
0.4
186
Normal
0.4
915
Tumor
0.4
968
Normal
0.4
494
Normal
0.4
424
Normal
0.4
938
Normal
0.4
862
Normal
0.4
528
Normal
0.4
368
Normal
0.4
514
Normal
0.3
558
Normal
0.3
393
Tumor
0.3
386
Normal
0.3
574
Normal
0.3
662
Normal
0.3
627
Tumor
0.3
978
Normal
0.3
392
Normal
0.3
354
Normal
0.3
124
Normal
0.3
218
Normal
0.3
484
Normal
0.3
818
Normal
0.3
861
Tumor
0.3
428
Normal
0.3
738
Normal
0.3
444
Normal
0.3
1042
Normal
0.3
686
Normal
0.3
364
Normal
0.3
672
Normal
0.3
615
Tumor
0.3
617
Tumor
0.3
858
Normal
0.3
231
Tumor
0.3
112
Tumor
0.3
852
Normal
0.3
956
Normal
0.3
284
Normal
0.3
415
Tumor
0.3
412
Normal
0.3
113
Tumor
0.3
142
Normal
0.3
488
Normal
0.3
268
Normal
0.3
474
Normal
0.3
746
Normal
0.3
816
Normal
0.2
741
Tumor
0.2
228
Normal
0.2
384
Normal
0.2
721
Tumor
0.2
867
Tumor
0.2
874
Normal
0.2
286
Normal
0.2
434
Normal
0.2
435
Tumor
0.2
786
Normal
0.2
824
Normal
0.2
916
Normal
0.2
534
Normal
0.2
195
Tumor
0.2
924
Normal
0.2
955
Tumor
0.2
778
Normal
0.2
663
Tumor
0.2
546
Normal
0.2
911
Tumor
0.2
1026
Normal
0.2
755
Tumor
0.2
217
Tumor
0.2
695
Tumor
0.2
227
Tumor
0.2
423
Tumor
0.2
744
Normal
0.2
341
Tumor
0.2
212
Normal
0.2
357
Tumor
0.2
331
Tumor
0.1
473
Tumor
0.1
697
Tumor
0.1
518
Normal
0.1
882
Normal
0.1
526
Normal
0.1
261
Tumor
0.1
224
Normal
0.1
554
Normal
0.1
445
Tumor
0.1
918
Normal
0.1
884
Normal
0.1
472
Normal
0.1
191
Tumor
0.1
976
Normal
0.1
221
Tumor
0.1
353
Tumor
0.1
1021
Tumor
0.1
538
Normal
0.1
516
Normal
0.1
1031
Tumor
0.1
465
Tumor
0.1
536
Normal
0.1
647
Tumor
0.1
277
Tumor
0.0
478
Normal
0.0
135
Tumor
0.0
966
Normal
0.0
517
Tumor
0.0
213
Tumor
0.0
715
Tumor
0.0
487
Tumor
0.0
185
Tumor
0.0
161
Tumor
0.0
498
Normal
0.0
1015
Tumor
0.0
391
Tumor
0.0
641
Tumor
0.0
557
Tumor
0.0
223
Tumor
0.0
271
Tumor
0.0
477
Tumor
0.0
965
Tumor
0.0
963
Tumor
0.0
141
Tumor
-0.1
351
Tumor
-0.1
461
Tumor
-0.1
431
Tumor
-0.1
447
Tumor
-0.1
743
Tumor
-0.1
873
Tumor
-0.1
877
Tumor
-0.1
857
Tumor
-0.1
573
Tumor
-0.1
355
Tumor
-0.1
387
Tumor
-0.1
957
Tumor
-0.1
367
Tumor
-0.1
395
Tumor
-0.1
1025
Tumor
-0.1
1013
Tumor
-0.1
923
Tumor
-0.1
863
Tumor
-0.1
481
Tumor
-0.1
665
Tumor
-0.1
187
Tumor
-0.1
313
Tumor
-0.1
123
Tumor
-0.1
297
Tumor
-0.1
977
Tumor
-0.1
671
Tumor
-0.1
567
Tumor
-0.1
553
Tumor
-0.2
524
Normal
-0.2
411
Tumor
-0.2
467
Tumor
-0.2
433
Tumor
-0.2
785
Tumor
-0.2
635
Tumor
-0.2
491
Tumor
-0.2
492
Normal
-0.2
745
Tumor
-0.2
967
Tumor
-0.2
881
Tumor
-0.2
413
Tumor
-0.2
443
Tumor
-0.2
563
Tumor
-0.2
363
Tumor
-0.2
814
Normal
-0.2
943
Tumor
-0.2
361
Tumor
-0.2
483
Tumor
-0.2
463
Tumor
-0.2
1045
Tumor
-0.3
685
Tumor
-0.3
137
Tumor
-0.3
493
Tumor
-0.3
917
Tumor
-0.3
285
Tumor
-0.3
147
Tumor
-0.3
823
Tumor
-0.3
383
Tumor
-0.3
527
Tumor
-0.3
427
Tumor
-0.3
311
Tumor
-0.3
975
Tumor
-0.3
727
Tumor
-0.3
724
Normal
-0.3
983
Tumor
-0.3
365
Tumor
-0.3
865
Tumor
-0.3
257
Tumor
-0.3
343
Tumor
-0.4
953
Tumor
-0.4
537
Tumor
-0.4
533
Tumor
-0.4
851
Tumor
-0.4
497
Tumor
-0.4
815
Tumor
-0.4
131
Tumor
-0.4
471
Tumor
-0.4
1027
Tumor
-0.4
921
Tumor
-0.4
817
Tumor
-0.4
375
Tumor
-0.4
523
Tumor
-0.5
661
Tumor
-0.5
883
Tumor
-0.5
951
Tumor
-0.5
125
Tumor
-0.5
513
Tumor
-0.6
385
Tumor
-0.6
777
Tumor
-0.6
813
Tumor
-0.6
455
Tumor
-0.6
545
Tumor
-0.7
421
Tumor
-0.7
525
Tumor
-0.7
211
Tumor
-0.7
937
Tumor
-0.7
737
Tumor
-0.7
515
Tumor
-0.8
425
Tumor
-0.8
283
Tumor
-0.8
925
Tumor
-0.8
535
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.