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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFA4L2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
834.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
364.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
347.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
262.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
251.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
204.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
162.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
148.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
147.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
123.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
121.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
117.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
109.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
106.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
105.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
93.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
92.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
90.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
90.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
88.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
88.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
87.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
81.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
79.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
79.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
77.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
75.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
71.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
58.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
56.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
56.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
55.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
48.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
43.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
42.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
42.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
39.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
39.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
36.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
33.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
30.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
16.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFA4L2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
174.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
161.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
141.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
101.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
79.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
77.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
73.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
69.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
69.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
66.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
64.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
50.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
47.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
36.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
3.3
313
Tumor
2.6
813
Tumor
2.6
545
Tumor
2.3
527
Tumor
2.3
877
Tumor
2.2
523
Tumor
2.2
983
Tumor
2.2
1021
Tumor
2.2
663
Tumor
2.1
285
Tumor
2.0
535
Tumor
1.9
923
Tumor
1.9
375
Tumor
1.9
573
Tumor
1.7
125
Tumor
1.7
685
Tumor
1.6
343
Tumor
1.5
497
Tumor
1.5
917
Tumor
1.3
463
Tumor
1.2
743
Tumor
1.2
351
Tumor
1.1
537
Tumor
1.1
671
Tumor
1.0
135
Tumor
1.0
433
Tumor
0.9
815
Tumor
0.9
953
Tumor
0.9
443
Tumor
0.8
413
Tumor
0.8
311
Tumor
0.8
517
Tumor
0.7
943
Tumor
0.7
355
Tumor
0.6
823
Tumor
0.6
283
Tumor
0.6
957
Tumor
0.5
383
Tumor
0.5
131
Tumor
0.5
447
Tumor
0.5
367
Tumor
0.5
697
Tumor
0.5
141
Tumor
0.4
865
Tumor
0.4
814
Normal
0.4
192
Normal
0.4
231
Tumor
0.4
395
Tumor
0.4
393
Tumor
0.3
327
Tumor
0.3
557
Tumor
0.3
1027
Tumor
0.3
217
Tumor
0.3
937
Tumor
0.3
331
Tumor
0.3
883
Tumor
0.2
817
Tumor
0.2
145
Tumor
0.2
647
Tumor
0.2
513
Tumor
0.2
665
Tumor
0.2
492
Normal
0.2
661
Tumor
0.2
491
Tumor
0.2
161
Tumor
0.2
451
Tumor
0.2
1041
Tumor
0.1
963
Tumor
0.1
314
Normal
0.1
137
Tumor
0.1
218
Normal
0.1
411
Tumor
0.1
635
Tumor
0.1
713
Tumor
0.1
1015
Tumor
0.1
363
Tumor
0.1
187
Tumor
0.1
387
Tumor
0.1
297
Tumor
0.1
421
Tumor
0.1
515
Tumor
0.1
272
Normal
0.1
863
Tumor
0.0
568
Normal
0.0
196
Normal
0.0
563
Tumor
0.0
627
Tumor
0.0
222
Normal
0.0
376
Normal
0.0
146
Normal
0.0
271
Tumor
0.0
214
Normal
0.0
113
Tumor
0.0
332
Normal
0.0
493
Tumor
0.0
913
Tumor
0.0
977
Tumor
0.0
473
Tumor
0.0
525
Tumor
0.0
298
Normal
0.0
981
Tumor
0.0
498
Normal
0.0
455
Tumor
0.0
394
Normal
0.0
483
Tumor
0.0
715
Tumor
0.0
388
Normal
0.0
546
Normal
-0.1
785
Tumor
-0.1
353
Tumor
-0.1
984
Normal
-0.1
536
Normal
-0.1
915
Tumor
-0.1
617
Tumor
-0.1
538
Normal
-0.1
213
Tumor
-0.1
258
Normal
-0.1
1045
Tumor
-0.1
312
Normal
-0.1
564
Normal
-0.1
277
Tumor
-0.1
672
Normal
-0.1
695
Tumor
-0.1
967
Tumor
-0.1
666
Normal
-0.1
396
Normal
-0.1
341
Tumor
-0.2
223
Tumor
-0.2
386
Normal
-0.2
195
Tumor
-0.2
861
Tumor
-0.2
965
Tumor
-0.2
227
Tumor
-0.2
745
Tumor
-0.2
391
Tumor
-0.2
641
Tumor
-0.2
431
Tumor
-0.2
268
Normal
-0.2
392
Normal
-0.2
911
Tumor
-0.2
866
Normal
-0.2
1031
Tumor
-0.2
1044
Normal
-0.2
232
Normal
-0.2
257
Tumor
-0.2
664
Normal
-0.2
191
Tumor
-0.2
857
Tumor
-0.2
916
Normal
-0.2
574
Normal
-0.2
361
Tumor
-0.2
615
Tumor
-0.2
881
Tumor
-0.2
221
Tumor
-0.2
224
Normal
-0.3
385
Tumor
-0.3
951
Tumor
-0.3
755
Tumor
-0.3
278
Normal
-0.3
1032
Normal
-0.3
818
Normal
-0.3
352
Normal
-0.3
262
Normal
-0.3
142
Normal
-0.3
147
Tumor
-0.3
488
Normal
-0.3
777
Tumor
-0.3
534
Normal
-0.3
267
Tumor
-0.3
444
Normal
-0.3
571
Tumor
-0.4
944
Normal
-0.4
558
Normal
-0.4
1014
Normal
-0.4
921
Tumor
-0.4
132
Normal
-0.4
554
Normal
-0.4
572
Normal
-0.4
636
Normal
-0.4
884
Normal
-0.4
724
Normal
-0.4
185
Tumor
-0.4
954
Normal
-0.4
737
Tumor
-0.4
786
Normal
-0.4
528
Normal
-0.4
975
Tumor
-0.4
978
Normal
-0.4
648
Normal
-0.4
286
Normal
-0.4
138
Normal
-0.5
188
Normal
-0.5
364
Normal
-0.5
471
Tumor
-0.5
427
Tumor
-0.5
112
Tumor
-0.5
662
Normal
-0.5
514
Normal
-0.5
918
Normal
-0.5
741
Tumor
-0.5
384
Normal
-0.5
1043
Tumor
-0.5
982
Normal
-0.5
477
Tumor
-0.5
778
Normal
-0.5
553
Tumor
-0.5
228
Normal
-0.5
357
Tumor
-0.5
494
Normal
-0.5
628
Normal
-0.5
171
Tumor
-0.5
484
Normal
-0.5
344
Normal
-0.5
938
Normal
-0.5
136
Normal
-0.5
851
Tumor
-0.6
1016
Normal
-0.6
445
Tumor
-0.6
487
Tumor
-0.6
461
Tumor
-0.6
284
Normal
-0.6
756
Normal
-0.6
478
Normal
-0.6
642
Normal
-0.6
864
Normal
-0.6
958
Normal
-0.6
616
Normal
-0.6
1046
Normal
-0.6
526
Normal
-0.6
956
Normal
-0.6
211
Tumor
-0.6
518
Normal
-0.6
423
Tumor
-0.6
467
Tumor
-0.6
1028
Normal
-0.6
354
Normal
-0.6
968
Normal
-0.6
922
Normal
-0.6
415
Tumor
-0.6
261
Tumor
-0.6
618
Normal
-0.6
824
Normal
-0.7
342
Normal
-0.7
852
Normal
-0.7
425
Tumor
-0.7
123
Tumor
-0.7
874
Normal
-0.7
816
Normal
-0.7
126
Normal
-0.7
212
Normal
-0.7
448
Normal
-0.7
464
Normal
-0.7
926
Normal
-0.7
878
Normal
-0.7
952
Normal
-0.7
533
Tumor
-0.8
746
Normal
-0.8
358
Normal
-0.8
925
Tumor
-0.8
456
Normal
-0.8
465
Tumor
-0.8
162
Normal
-0.8
466
Normal
-0.8
472
Normal
-0.8
368
Normal
-0.8
366
Normal
-0.8
722
Normal
-0.8
924
Normal
-0.8
186
Normal
-0.8
127
Tumor
-0.8
428
Normal
-0.9
976
Normal
-0.9
862
Normal
-0.9
356
Normal
-0.9
1022
Normal
-0.9
873
Tumor
-0.9
882
Normal
-0.9
482
Normal
-0.9
1026
Normal
-0.9
474
Normal
-0.9
172
Normal
-0.9
914
Normal
-0.9
723
Tumor
-0.9
868
Normal
-0.9
365
Tumor
-0.9
462
Normal
-0.9
1042
Normal
-1.0
435
Tumor
-1.0
728
Normal
-1.0
422
Normal
-1.0
698
Normal
-1.0
148
Normal
-1.0
424
Normal
-1.0
727
Tumor
-1.0
516
Normal
-1.0
721
Tumor
-1.0
468
Normal
-1.0
714
Normal
-1.0
124
Normal
-1.0
416
Normal
-1.0
696
Normal
-1.0
1013
Tumor
-1.0
111
Normal
-1.0
412
Normal
-1.0
414
Normal
-1.0
912
Normal
-1.0
1025
Tumor
-1.1
686
Normal
-1.1
955
Tumor
-1.1
114
Normal
-1.1
426
Normal
-1.1
858
Normal
-1.1
328
Normal
-1.1
744
Normal
-1.1
716
Normal
-1.1
446
Normal
-1.1
964
Normal
-1.1
742
Normal
-1.2
362
Normal
-1.2
867
Tumor
-1.2
966
Normal
-1.3
128
Normal
-1.3
738
Normal
-1.4
481
Tumor
-1.4
452
Normal
-1.4
432
Normal
-1.6
436
Normal
-1.6
434
Normal
-1.8
524
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
