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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GAS2L1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
55.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GAS2L1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.1
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1014
Normal
2.6
984
Normal
2.5
978
Normal
2.3
982
Normal
2.0
1016
Normal
1.5
545
Tumor
0.9
823
Tumor
0.9
714
Normal
0.9
722
Normal
0.9
533
Tumor
0.8
944
Normal
0.8
327
Tumor
0.8
393
Tumor
0.7
952
Normal
0.7
311
Tumor
0.7
483
Tumor
0.7
918
Normal
0.7
696
Normal
0.7
331
Tumor
0.7
954
Normal
0.7
513
Tumor
0.7
953
Tumor
0.7
213
Tumor
0.6
716
Normal
0.6
915
Tumor
0.6
283
Tumor
0.6
395
Tumor
0.6
937
Tumor
0.6
743
Tumor
0.6
573
Tumor
0.6
745
Tumor
0.6
527
Tumor
0.6
865
Tumor
0.6
553
Tumor
0.6
647
Tumor
0.6
525
Tumor
0.6
481
Tumor
0.5
686
Normal
0.5
627
Tumor
0.5
917
Tumor
0.5
141
Tumor
0.5
328
Normal
0.5
415
Tumor
0.5
863
Tumor
0.5
938
Normal
0.5
943
Tumor
0.5
923
Tumor
0.5
567
Tumor
0.5
615
Tumor
0.5
964
Normal
0.4
482
Normal
0.4
785
Tumor
0.4
526
Normal
0.4
1025
Tumor
0.4
641
Tumor
0.4
537
Tumor
0.4
491
Tumor
0.4
498
Normal
0.4
343
Tumor
0.4
472
Normal
0.4
365
Tumor
0.4
786
Normal
0.4
462
Normal
0.4
951
Tumor
0.4
112
Tumor
0.4
223
Tumor
0.4
487
Tumor
0.4
538
Normal
0.4
385
Tumor
0.4
925
Tumor
0.3
357
Tumor
0.3
723
Tumor
0.3
1027
Tumor
0.3
737
Tumor
0.3
493
Tumor
0.3
777
Tumor
0.3
914
Normal
0.3
427
Tumor
0.3
297
Tumor
0.3
563
Tumor
0.3
461
Tumor
0.3
697
Tumor
0.3
127
Tumor
0.3
421
Tumor
0.3
416
Normal
0.3
474
Normal
0.3
755
Tumor
0.3
446
Normal
0.3
557
Tumor
0.3
257
Tumor
0.3
1022
Normal
0.3
955
Tumor
0.3
396
Normal
0.3
355
Tumor
0.3
866
Normal
0.3
968
Normal
0.3
145
Tumor
0.3
451
Tumor
0.3
926
Normal
0.3
1021
Tumor
0.3
864
Normal
0.3
392
Normal
0.3
558
Normal
0.3
862
Normal
0.3
882
Normal
0.3
477
Tumor
0.2
635
Tumor
0.2
528
Normal
0.2
425
Tumor
0.2
868
Normal
0.2
124
Normal
0.2
344
Normal
0.2
671
Tumor
0.2
874
Normal
0.2
517
Tumor
0.2
956
Normal
0.2
227
Tumor
0.2
492
Normal
0.2
444
Normal
0.2
1043
Tumor
0.2
231
Tumor
0.2
142
Normal
0.2
877
Tumor
0.2
138
Normal
0.2
672
Normal
0.2
1028
Normal
0.2
368
Normal
0.2
313
Tumor
0.2
518
Normal
0.2
778
Normal
0.2
574
Normal
0.2
125
Tumor
0.2
742
Normal
0.2
354
Normal
0.2
394
Normal
0.2
756
Normal
0.2
137
Tumor
0.2
515
Tumor
0.2
642
Normal
0.2
912
Normal
0.2
924
Normal
0.2
192
Normal
0.2
815
Tumor
0.2
554
Normal
0.2
878
Normal
0.2
516
Normal
0.2
746
Normal
0.2
484
Normal
0.2
728
Normal
0.2
422
Normal
0.2
514
Normal
0.2
191
Tumor
0.2
387
Tumor
0.2
353
Tumor
0.1
456
Normal
0.1
851
Tumor
0.1
665
Tumor
0.1
386
Normal
0.1
488
Normal
0.1
698
Normal
0.1
618
Normal
0.1
383
Tumor
0.1
463
Tumor
0.1
277
Tumor
0.1
146
Normal
0.1
1031
Tumor
0.1
572
Normal
0.1
224
Normal
0.1
818
Normal
0.1
975
Tumor
0.1
884
Normal
0.1
123
Tumor
0.1
564
Normal
0.1
211
Tumor
0.1
111
Normal
0.1
361
Tumor
0.1
136
Normal
0.1
816
Normal
0.1
478
Normal
0.1
981
Tumor
0.1
881
Tumor
0.1
636
Normal
0.1
195
Tumor
0.1
217
Tumor
0.1
957
Tumor
0.1
1041
Tumor
0.1
1045
Tumor
0.1
534
Normal
0.1
1042
Normal
0.1
187
Tumor
0.1
312
Normal
0.1
524
Normal
0.1
413
Tumor
0.1
916
Normal
0.1
452
Normal
0.1
228
Normal
0.1
911
Tumor
0.1
471
Tumor
0.1
628
Normal
0.1
341
Tumor
0.1
873
Tumor
0.1
114
Normal
0.1
445
Tumor
0.1
464
Normal
0.1
436
Normal
0.0
814
Normal
0.0
1046
Normal
0.0
867
Tumor
0.0
568
Normal
0.0
358
Normal
0.0
221
Tumor
0.0
976
Normal
0.0
428
Normal
0.0
131
Tumor
0.0
813
Tumor
0.0
494
Normal
0.0
536
Normal
0.0
662
Normal
0.0
741
Tumor
0.0
455
Tumor
0.0
967
Tumor
0.0
363
Tumor
0.0
356
Normal
0.0
342
Normal
0.0
666
Normal
0.0
738
Normal
0.0
218
Normal
0.0
268
Normal
0.0
232
Normal
0.0
721
Tumor
0.0
364
Normal
0.0
535
Tumor
0.0
664
Normal
0.0
443
Tumor
0.0
958
Normal
0.0
922
Normal
0.0
132
Normal
0.0
963
Tumor
0.0
857
Tumor
0.0
261
Tumor
0.0
391
Tumor
0.0
423
Tumor
0.0
466
Normal
0.0
367
Tumor
0.0
384
Normal
0.0
332
Normal
0.0
648
Normal
0.0
447
Tumor
0.0
222
Normal
0.0
414
Normal
-0.1
214
Normal
-0.1
616
Normal
-0.1
278
Normal
-0.1
426
Normal
-0.1
497
Tumor
-0.1
126
Normal
-0.1
258
Normal
-0.1
434
Normal
-0.1
352
Normal
-0.1
362
Normal
-0.1
724
Normal
-0.1
286
Normal
-0.1
921
Tumor
-0.1
262
Normal
-0.1
744
Normal
-0.1
448
Normal
-0.1
376
Normal
-0.1
1032
Normal
-0.1
571
Tumor
-0.1
468
Normal
-0.1
424
Normal
-0.1
432
Normal
-0.1
366
Normal
-0.1
196
Normal
-0.1
298
Normal
-0.1
715
Tumor
-0.1
727
Tumor
-0.1
113
Tumor
-0.1
824
Normal
-0.1
852
Normal
-0.1
523
Tumor
-0.2
1044
Normal
-0.2
212
Normal
-0.2
977
Tumor
-0.2
617
Tumor
-0.2
883
Tumor
-0.2
1013
Tumor
-0.2
388
Normal
-0.2
1026
Normal
-0.2
663
Tumor
-0.2
965
Tumor
-0.2
966
Normal
-0.2
314
Normal
-0.2
271
Tumor
-0.2
272
Normal
-0.2
913
Tumor
-0.2
285
Tumor
-0.2
147
Tumor
-0.2
267
Tumor
-0.2
546
Normal
-0.2
467
Tumor
-0.2
284
Normal
-0.2
375
Tumor
-0.2
412
Normal
-0.2
473
Tumor
-0.3
817
Tumor
-0.3
185
Tumor
-0.3
128
Normal
-0.3
161
Tumor
-0.3
188
Normal
-0.3
713
Tumor
-0.3
858
Normal
-0.3
695
Tumor
-0.3
861
Tumor
-0.3
433
Tumor
-0.3
148
Normal
-0.4
172
Normal
-0.4
135
Tumor
-0.4
162
Normal
-0.4
171
Tumor
-0.4
1015
Tumor
-0.4
186
Normal
-0.5
685
Tumor
-0.5
661
Tumor
-0.5
431
Tumor
-0.5
351
Tumor
-0.5
465
Tumor
-0.6
435
Tumor
-0.6
411
Tumor
-0.8
983
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
