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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIGIRR is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
323.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
232.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
222.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
184.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
182.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
170.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
163.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
154.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
152.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
149.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
146.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
132.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
123.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
121.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
119.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
118.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
115.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
113.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
112.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
112.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
111.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
101.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
98.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
95.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
94.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
94.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
94.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
93.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
93.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
89.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
87.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
87.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
80.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
80.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
80.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
78.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
77.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
75.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
74.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
74.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
72.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
72.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
72.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
71.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
71.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
71.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
70.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
70.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
69.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
69.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
68.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
67.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
67.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
67.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
66.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
66.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
66.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
65.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
65.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
64.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
64.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
63.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
63.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
62.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
61.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
60.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
60.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
60.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
58.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
58.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
57.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
56.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
56.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
56.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
56.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
55.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
54.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
54.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
53.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
53.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
53.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
52.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
52.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
51.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
51.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
51.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
51.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
50.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
50.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
50.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
49.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
49.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
48.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
48.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
47.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
47.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
46.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
45.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
45.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
44.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
42.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
41.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
41.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
41.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
41.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
40.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
39.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
39.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
38.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
36.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
36.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
36.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
34.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
32.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
31.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
31.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
31.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
30.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
28.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIGIRR is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.0
Number of samples
231
Samples
Sample
Description
TPM
DO45109
0 years, male, NA, stage:2, alive, 1590 days
133.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
99.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
79.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
78.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
76.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
74.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
71.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
70.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
68.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
64.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
63.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
63.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
63.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
62.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
61.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
58.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
58.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
54.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
54.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
54.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
51.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
51.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
49.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
45.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
42.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
41.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
40.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
37.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
37.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
37.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
35.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
27.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1031
Tumor
2.3
641
Tumor
2.0
471
Tumor
1.9
1025
Tumor
1.8
921
Tumor
1.5
416
Normal
1.5
271
Tumor
1.4
422
Normal
1.4
975
Tumor
1.3
817
Tumor
1.2
1042
Normal
1.0
386
Normal
1.0
221
Tumor
1.0
951
Tumor
1.0
618
Normal
1.0
413
Tumor
1.0
746
Normal
0.9
868
Normal
0.8
1032
Normal
0.8
786
Normal
0.8
396
Normal
0.8
716
Normal
0.7
356
Normal
0.7
756
Normal
0.7
227
Tumor
0.7
956
Normal
0.7
328
Normal
0.7
312
Normal
0.7
976
Normal
0.7
1046
Normal
0.7
412
Normal
0.6
394
Normal
0.6
514
Normal
0.6
1022
Normal
0.6
553
Tumor
0.6
698
Normal
0.6
874
Normal
0.6
426
Normal
0.6
331
Tumor
0.6
364
Normal
0.6
415
Tumor
0.6
214
Normal
0.6
424
Normal
0.6
916
Normal
0.6
222
Normal
0.6
148
Normal
0.6
192
Normal
0.6
713
Tumor
0.6
714
Normal
0.6
188
Normal
0.6
518
Normal
0.6
918
Normal
0.6
516
Normal
0.5
366
Normal
0.5
162
Normal
0.5
362
Normal
0.5
376
Normal
0.5
686
Normal
0.5
172
Normal
0.5
444
Normal
0.5
484
Normal
0.5
368
Normal
0.5
414
Normal
0.5
696
Normal
0.5
385
Tumor
0.5
428
Normal
0.5
964
Normal
0.5
914
Normal
0.5
136
Normal
0.5
778
Normal
0.4
196
Normal
0.4
446
Normal
0.4
524
Normal
0.4
258
Normal
0.4
722
Normal
0.4
728
Normal
0.4
926
Normal
0.4
456
Normal
0.4
744
Normal
0.4
278
Normal
0.4
138
Normal
0.4
464
Normal
0.4
785
Tumor
0.4
858
Normal
0.4
395
Tumor
0.4
924
Normal
0.4
864
Normal
0.4
472
Normal
0.4
922
Normal
0.4
128
Normal
0.4
884
Normal
0.4
262
Normal
0.4
186
Normal
0.4
478
Normal
0.4
536
Normal
0.4
852
Normal
0.3
616
Normal
0.3
721
Tumor
0.3
388
Normal
0.3
126
Normal
0.3
1044
Normal
0.3
944
Normal
0.3
938
Normal
0.3
462
Normal
0.3
268
Normal
0.3
466
Normal
0.3
272
Normal
0.3
862
Normal
0.3
448
Normal
0.3
132
Normal
0.3
392
Normal
0.3
232
Normal
0.3
642
Normal
0.3
628
Normal
0.3
432
Normal
0.3
492
Normal
0.3
218
Normal
0.3
142
Normal
0.3
474
Normal
0.3
968
Normal
0.2
146
Normal
0.2
958
Normal
0.2
883
Tumor
0.2
912
Normal
0.2
384
Normal
0.2
636
Normal
0.2
723
Tumor
0.2
526
Normal
0.2
494
Normal
0.2
917
Tumor
0.2
824
Normal
0.2
434
Normal
0.2
882
Normal
0.2
286
Normal
0.2
954
Normal
0.2
436
Normal
0.2
866
Normal
0.2
1026
Normal
0.2
298
Normal
0.2
498
Normal
0.2
534
Normal
0.2
314
Normal
0.2
482
Normal
0.2
742
Normal
0.2
145
Tumor
0.2
881
Tumor
0.2
528
Normal
0.2
814
Normal
0.1
481
Tumor
0.1
363
Tumor
0.1
111
Normal
0.1
452
Normal
0.1
738
Normal
0.1
468
Normal
0.1
228
Normal
0.1
818
Normal
0.1
114
Normal
0.1
952
Normal
0.1
1028
Normal
0.1
223
Tumor
0.1
513
Tumor
0.1
741
Tumor
0.0
1045
Tumor
0.0
332
Normal
0.0
627
Tumor
0.0
966
Normal
0.0
867
Tumor
0.0
447
Tumor
0.0
284
Normal
N/A
212
Normal
0.0
224
Normal
0.0
877
Tumor
0.0
967
Tumor
0.0
267
Tumor
0.0
421
Tumor
0.0
297
Tumor
0.0
411
Tumor
-0.1
617
Tumor
-0.1
963
Tumor
-0.1
554
Normal
-0.1
365
Tumor
-0.1
546
Normal
-0.1
327
Tumor
-0.1
857
Tumor
-0.1
488
Normal
-0.1
311
Tumor
-0.1
124
Normal
-0.1
185
Tumor
-0.1
187
Tumor
-0.2
195
Tumor
-0.2
467
Tumor
-0.2
135
Tumor
-0.2
955
Tumor
-0.2
878
Normal
-0.2
455
Tumor
-0.2
231
Tumor
-0.2
261
Tumor
-0.2
816
Normal
-0.2
461
Tumor
-0.2
217
Tumor
-0.2
863
Tumor
-0.2
391
Tumor
-0.2
277
Tumor
-0.2
943
Tumor
-0.3
823
Tumor
-0.3
515
Tumor
-0.3
538
Normal
-0.3
383
Tumor
-0.3
213
Tumor
-0.3
697
Tumor
-0.3
141
Tumor
-0.4
491
Tumor
-0.4
257
Tumor
-0.4
355
Tumor
-0.4
483
Tumor
-0.4
915
Tumor
-0.4
525
Tumor
-0.4
423
Tumor
-0.4
1043
Tumor
-0.4
615
Tumor
-0.4
695
Tumor
-0.4
493
Tumor
-0.4
433
Tumor
-0.4
477
Tumor
-0.4
387
Tumor
-0.4
727
Tumor
-0.5
161
Tumor
-0.5
393
Tumor
-0.5
743
Tumor
-0.5
715
Tumor
-0.5
361
Tumor
-0.5
755
Tumor
-0.6
127
Tumor
-0.6
813
Tumor
-0.6
545
Tumor
-0.6
191
Tumor
-0.6
925
Tumor
-0.6
777
Tumor
-0.6
445
Tumor
-0.6
873
Tumor
-0.6
313
Tumor
-0.6
487
Tumor
-0.6
125
Tumor
-0.6
137
Tumor
-0.7
473
Tumor
-0.7
443
Tumor
-0.7
1041
Tumor
-0.7
463
Tumor
-0.7
913
Tumor
-0.7
113
Tumor
-0.7
523
Tumor
-0.7
911
Tumor
-0.7
425
Tumor
-0.7
724
Normal
-0.7
427
Tumor
-0.8
685
Tumor
-0.8
375
Tumor
-0.8
861
Tumor
-0.8
431
Tumor
-0.8
211
Tumor
-0.8
535
Tumor
-0.8
171
Tumor
-0.8
537
Tumor
-0.8
285
Tumor
-0.9
112
Tumor
-0.9
123
Tumor
-0.9
953
Tumor
-0.9
147
Tumor
-0.9
283
Tumor
-0.9
465
Tumor
-0.9
451
Tumor
-0.9
1021
Tumor
-0.9
527
Tumor
-0.9
435
Tumor
-1.0
965
Tumor
-1.0
923
Tumor
-1.0
737
Tumor
-1.0
635
Tumor
-1.0
937
Tumor
-1.0
367
Tumor
-1.1
533
Tumor
-1.1
851
Tumor
-1.1
865
Tumor
-1.1
957
Tumor
-1.1
497
Tumor
-1.1
745
Tumor
-1.1
517
Tumor
-1.1
131
Tumor
-1.2
815
Tumor
-1.5
1027
Tumor
-1.9
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
