We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEMA4B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
79.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
38.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEMA4B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
164.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
119.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
109.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
92.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
66.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
57.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
52.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
49.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
47.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
47.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
44.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
36.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.6
981
Tumor
1.2
937
Tumor
1.0
445
Tumor
0.9
311
Tumor
0.8
975
Tumor
0.8
737
Tumor
0.7
131
Tumor
0.7
813
Tumor
0.7
467
Tumor
0.7
392
Normal
0.7
343
Tumor
0.7
777
Tumor
0.6
695
Tumor
0.6
647
Tumor
0.6
455
Tumor
0.6
186
Normal
0.6
162
Normal
0.6
661
Tumor
0.6
545
Tumor
0.6
785
Tumor
0.5
396
Normal
0.5
526
Normal
0.5
393
Tumor
0.5
385
Tumor
0.5
864
Normal
0.5
394
Normal
0.5
983
Tumor
0.5
514
Normal
0.5
573
Tumor
0.5
874
Normal
0.5
386
Normal
0.5
924
Normal
0.5
574
Normal
0.5
862
Normal
0.5
858
Normal
0.5
786
Normal
0.5
917
Tumor
0.4
375
Tumor
0.4
172
Normal
0.4
818
Normal
0.4
642
Normal
0.4
482
Normal
0.4
376
Normal
0.4
436
Normal
0.4
671
Tumor
0.4
135
Tumor
0.4
878
Normal
0.4
1046
Normal
0.4
756
Normal
0.4
1042
Normal
0.4
616
Normal
0.4
1043
Tumor
0.4
877
Tumor
0.4
446
Normal
0.4
342
Normal
0.4
462
Normal
0.4
866
Normal
0.4
955
Tumor
0.4
463
Tumor
0.4
868
Normal
0.4
745
Tumor
0.4
863
Tumor
0.4
125
Tumor
0.4
312
Normal
0.4
431
Tumor
0.4
696
Normal
0.4
368
Normal
0.4
778
Normal
0.4
146
Normal
0.3
416
Normal
0.3
112
Tumor
0.3
635
Tumor
0.3
341
Tumor
0.3
824
Normal
0.3
478
Normal
0.3
148
Normal
0.3
218
Normal
0.3
327
Tumor
0.3
481
Tumor
0.3
958
Normal
0.3
358
Normal
0.3
472
Normal
0.3
344
Normal
0.3
568
Normal
0.3
132
Normal
0.3
388
Normal
0.3
141
Tumor
0.3
515
Tumor
0.3
852
Normal
0.3
384
Normal
0.3
283
Tumor
0.3
527
Tumor
0.3
723
Tumor
0.3
666
Normal
0.3
746
Normal
0.3
926
Normal
0.3
298
Normal
0.3
191
Tumor
0.3
188
Normal
0.3
365
Tumor
0.3
314
Normal
0.3
517
Tumor
0.3
456
Normal
0.3
332
Normal
0.3
984
Normal
0.2
464
Normal
0.2
728
Normal
0.2
286
Normal
0.2
968
Normal
0.2
187
Tumor
0.2
477
Tumor
0.2
354
Normal
0.2
664
Normal
0.2
615
Tumor
0.2
965
Tumor
0.2
714
Normal
0.2
648
Normal
0.2
1044
Normal
0.2
366
Normal
0.2
744
Normal
0.2
964
Normal
0.2
361
Tumor
0.2
815
Tumor
0.2
136
Normal
0.2
1026
Normal
0.2
415
Tumor
0.2
742
Normal
0.2
138
Normal
0.2
628
Normal
0.2
352
Normal
0.2
1015
Tumor
0.2
185
Tumor
0.2
814
Normal
0.2
452
Normal
0.2
535
Tumor
0.2
963
Tumor
0.2
558
Normal
0.2
857
Tumor
0.2
722
Normal
0.2
114
Normal
0.2
222
Normal
0.2
353
Tumor
0.2
572
Normal
0.2
816
Normal
0.2
113
Tumor
0.2
922
Normal
0.2
367
Tumor
0.2
111
Normal
0.2
192
Normal
0.2
278
Normal
0.2
142
Normal
0.2
145
Tumor
0.1
536
Normal
0.1
976
Normal
0.1
195
Tumor
0.1
528
Normal
0.1
982
Normal
0.1
444
Normal
0.1
966
Normal
0.1
618
Normal
0.1
258
Normal
0.1
672
Normal
0.1
662
Normal
0.1
474
Normal
0.1
1014
Normal
0.1
126
Normal
0.1
686
Normal
0.1
231
Tumor
0.1
1013
Tumor
0.1
952
Normal
0.1
461
Tumor
0.1
518
Normal
0.1
124
Normal
0.1
272
Normal
0.1
383
Tumor
0.1
716
Normal
0.1
364
Normal
0.1
161
Tumor
0.1
232
Normal
0.1
721
Tumor
0.1
271
Tumor
0.1
268
Normal
0.1
1016
Normal
0.1
882
Normal
0.1
564
Normal
0.1
516
Normal
0.1
213
Tumor
0.1
954
Normal
0.1
918
Normal
0.1
698
Normal
0.1
977
Tumor
0.1
387
Tumor
0.1
214
Normal
0.1
884
Normal
0.1
755
Tumor
0.1
1028
Normal
0.1
1025
Tumor
0.1
727
Tumor
0.1
663
Tumor
0.1
916
Normal
0.0
487
Tumor
0.0
978
Normal
0.0
217
Tumor
0.0
617
Tumor
0.0
713
Tumor
0.0
473
Tumor
0.0
943
Tumor
0.0
447
Tumor
0.0
468
Normal
0.0
443
Tumor
0.0
331
Tumor
0.0
563
Tumor
0.0
881
Tumor
0.0
912
Normal
0.0
914
Normal
0.0
391
Tumor
0.0
738
Normal
0.0
1021
Tumor
0.0
285
Tumor
0.0
297
Tumor
0.0
554
Normal
0.0
432
Normal
0.0
411
Tumor
0.0
228
Normal
0.0
196
Normal
0.0
434
Normal
0.0
915
Tumor
0.0
641
Tumor
0.0
451
Tumor
0.0
534
Normal
0.0
636
Normal
0.0
362
Normal
0.0
128
Normal
0.0
627
Tumor
0.0
823
Tumor
0.0
538
Normal
0.0
221
Tumor
0.0
466
Normal
0.0
356
Normal
-0.1
956
Normal
-0.1
395
Tumor
-0.1
851
Tumor
-0.1
277
Tumor
-0.1
557
Tumor
-0.1
212
Normal
-0.1
224
Normal
-0.1
1022
Normal
-0.1
267
Tumor
-0.1
944
Normal
-0.1
433
Tumor
-0.1
262
Normal
-0.1
913
Tumor
-0.1
127
Tumor
-0.1
546
Normal
-0.1
428
Normal
-0.1
883
Tumor
-0.1
911
Tumor
-0.1
355
Tumor
-0.1
421
Tumor
-0.1
357
Tumor
-0.1
1045
Tumor
-0.1
137
Tumor
-0.1
465
Tumor
-0.1
743
Tumor
-0.1
567
Tumor
-0.1
951
Tumor
-0.1
412
Normal
-0.2
524
Normal
-0.2
422
Normal
-0.2
413
Tumor
-0.2
938
Normal
-0.2
257
Tumor
-0.2
414
Normal
-0.2
261
Tumor
-0.2
313
Tumor
-0.2
484
Normal
-0.2
426
Normal
-0.2
147
Tumor
-0.2
425
Tumor
-0.2
448
Normal
-0.2
925
Tumor
-0.2
424
Normal
-0.2
817
Tumor
-0.2
171
Tumor
-0.2
498
Normal
-0.2
471
Tumor
-0.2
665
Tumor
-0.3
328
Normal
-0.3
923
Tumor
-0.3
867
Tumor
-0.3
363
Tumor
-0.3
697
Tumor
-0.3
284
Normal
-0.3
223
Tumor
-0.3
488
Normal
-0.3
423
Tumor
-0.3
497
Tumor
-0.3
1031
Tumor
-0.3
741
Tumor
-0.4
873
Tumor
-0.4
957
Tumor
-0.4
427
Tumor
-0.4
571
Tumor
-0.4
211
Tumor
-0.4
1032
Normal
-0.4
921
Tumor
-0.4
492
Normal
-0.4
483
Tumor
-0.5
435
Tumor
-0.5
494
Normal
-0.5
533
Tumor
-0.5
553
Tumor
-0.5
715
Tumor
-0.5
493
Tumor
-0.5
123
Tumor
-0.6
525
Tumor
-0.6
491
Tumor
-0.6
1027
Tumor
-0.6
967
Tumor
-0.7
537
Tumor
-0.7
861
Tumor
-0.7
227
Tumor
-0.7
513
Tumor
-0.7
953
Tumor
-0.8
724
Normal
-0.8
865
Tumor
-0.8
351
Tumor
-1.0
685
Tumor
-1.0
1041
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
