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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TACSTD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
308.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
206.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
109.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
65.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
63.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
54.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
52.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TACSTD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
1424.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
245.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
189.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
180.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
155.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
53.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
1.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
395
Tumor
2.6
478
Normal
1.8
852
Normal
1.8
384
Normal
1.5
976
Normal
1.5
916
Normal
1.5
777
Tumor
1.4
538
Normal
1.3
268
Normal
1.2
312
Normal
1.1
524
Normal
1.0
311
Tumor
1.0
958
Normal
1.0
492
Normal
1.0
444
Normal
0.9
514
Normal
0.9
1042
Normal
0.9
262
Normal
0.8
278
Normal
0.8
956
Normal
0.8
924
Normal
0.8
332
Normal
0.8
383
Tumor
0.8
943
Tumor
0.8
258
Normal
0.8
1022
Normal
0.8
427
Tumor
0.8
498
Normal
0.7
424
Normal
0.7
917
Tumor
0.7
272
Normal
0.7
574
Normal
0.7
1032
Normal
0.7
232
Normal
0.7
536
Normal
0.7
432
Normal
0.7
434
Normal
0.6
816
Normal
0.6
817
Tumor
0.6
422
Normal
0.6
386
Normal
0.6
416
Normal
0.6
881
Tumor
0.6
284
Normal
0.6
954
Normal
0.5
814
Normal
0.5
558
Normal
0.5
412
Normal
0.5
212
Normal
0.5
968
Normal
0.5
526
Normal
0.5
1028
Normal
0.5
722
Normal
0.4
396
Normal
0.4
415
Tumor
0.4
331
Tumor
0.4
518
Normal
0.4
494
Normal
0.4
388
Normal
0.4
491
Tumor
0.3
224
Normal
0.3
813
Tumor
0.3
446
Normal
0.3
878
Normal
0.3
966
Normal
0.3
455
Tumor
0.3
1025
Tumor
0.3
447
Tumor
0.3
488
Normal
0.3
267
Tumor
0.3
392
Normal
0.3
394
Normal
0.3
436
Normal
0.2
925
Tumor
0.2
362
Normal
0.2
516
Normal
0.2
366
Normal
0.2
228
Normal
0.2
912
Normal
0.2
884
Normal
0.2
364
Normal
0.2
1026
Normal
0.1
546
Normal
0.1
352
Normal
0.1
1044
Normal
0.1
211
Tumor
0.1
716
Normal
0.1
474
Normal
0.1
448
Normal
0.1
545
Tumor
0.1
882
Normal
0.1
1046
Normal
0.0
426
Normal
0.0
944
Normal
0.0
697
Tumor
0.0
462
Normal
0.0
468
Normal
0.0
1041
Tumor
0.0
756
Normal
0.0
818
Normal
0.0
456
Normal
0.0
354
Normal
0.0
344
Normal
0.0
534
Normal
0.0
563
Tumor
0.0
443
Tumor
0.0
484
Normal
-0.1
686
Normal
-0.1
857
Tumor
-0.1
231
Tumor
-0.1
938
Normal
-0.1
714
Normal
-0.1
328
Normal
-0.1
466
Normal
-0.1
564
Normal
-0.1
261
Tumor
-0.1
286
Normal
-0.1
525
Tumor
-0.1
698
Normal
-0.1
298
Normal
-0.1
823
Tumor
-0.2
914
Normal
-0.2
271
Tumor
-0.2
572
Normal
-0.2
445
Tumor
-0.2
461
Tumor
-0.2
922
Normal
-0.2
385
Tumor
-0.2
926
Normal
-0.2
696
Normal
-0.3
528
Normal
-0.3
517
Tumor
-0.3
746
Normal
-0.3
975
Tumor
-0.3
951
Tumor
-0.3
1027
Tumor
-0.3
393
Tumor
-0.3
554
Normal
-0.3
472
Normal
-0.3
918
Normal
-0.4
964
Normal
-0.4
421
Tumor
-0.4
223
Tumor
-0.4
433
Tumor
-0.4
513
Tumor
-0.4
428
Normal
-0.5
314
Normal
-0.5
883
Tumor
-0.5
391
Tumor
-0.5
786
Normal
-0.5
721
Tumor
-0.5
483
Tumor
-0.5
227
Tumor
-0.5
471
Tumor
-0.5
464
Normal
-0.5
356
Normal
-0.5
923
Tumor
-0.6
368
Normal
-0.6
482
Normal
-0.6
497
Tumor
-0.6
414
Normal
-0.6
283
Tumor
-0.6
277
Tumor
-0.6
452
Normal
-0.6
493
Tumor
-0.6
1031
Tumor
-0.6
376
Normal
-0.6
535
Tumor
-0.6
963
Tumor
-0.6
568
Normal
-0.6
487
Tumor
-0.6
257
Tumor
-0.6
553
Tumor
-0.6
1045
Tumor
-0.6
953
Tumor
-0.7
387
Tumor
-0.7
435
Tumor
-0.7
431
Tumor
-0.7
1021
Tumor
-0.7
778
Normal
-0.8
952
Normal
-0.8
413
Tumor
-0.8
481
Tumor
-0.8
297
Tumor
-0.8
285
Tumor
-0.9
358
Normal
-0.9
713
Tumor
-0.9
463
Tumor
-1.0
858
Normal
-1.0
533
Tumor
-1.0
527
Tumor
-1.0
473
Tumor
-1.0
523
Tumor
-1.0
921
Tumor
-1.0
915
Tumor
-1.0
477
Tumor
-1.0
785
Tumor
-1.0
342
Normal
-1.0
715
Tumor
-1.1
537
Tumor
-1.1
363
Tumor
-1.1
824
Normal
-1.1
967
Tumor
-1.2
341
Tumor
-1.2
355
Tumor
-1.2
695
Tumor
-1.3
515
Tumor
-1.3
745
Tumor
-1.4
755
Tumor
-1.4
1043
Tumor
-1.4
375
Tumor
-1.5
685
Tumor
-1.5
467
Tumor
-1.5
343
Tumor
-1.5
451
Tumor
-1.5
465
Tumor
-1.5
571
Tumor
-1.5
327
Tumor
-1.6
361
Tumor
-1.6
567
Tumor
-1.7
815
Tumor
-1.7
851
Tumor
-1.7
425
Tumor
-1.8
353
Tumor
-1.8
573
Tumor
-1.8
365
Tumor
-1.9
965
Tumor
-1.9
937
Tumor
-1.9
877
Tumor
-2.0
557
Tumor
-2.0
357
Tumor
-2.0
411
Tumor
-2.0
313
Tumor
-2.1
367
Tumor
-2.1
351
Tumor
-2.2
423
Tumor
-2.2
957
Tumor
-2.2
913
Tumor
-2.3
955
Tumor
-2.4
911
Tumor
-3.0
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
