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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OAF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
102.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
414.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
363.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
332.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
305.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
302.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
294.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
283.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
282.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
272.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
272.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
257.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
251.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
250.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
241.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
229.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
228.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
224.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
216.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
213.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
203.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
202.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
194.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
193.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
192.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
188.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
185.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
185.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
183.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
183.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
180.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
179.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
178.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
176.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
175.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
175.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
174.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
173.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
172.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
171.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
169.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
166.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
161.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
161.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
158.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
155.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
155.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
154.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
153.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
150.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
150.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
149.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
149.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
149.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
148.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
148.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
148.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
148.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
147.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
146.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
146.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
146.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
145.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
145.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
145.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
144.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
143.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
143.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
143.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
143.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
142.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
141.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
141.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
141.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
140.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
140.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
139.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
138.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
138.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
137.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
134.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
134.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
134.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
132.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
130.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
130.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
130.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
129.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
128.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
128.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
127.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
126.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
126.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
126.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
126.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
126.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
125.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
125.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
124.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
124.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
123.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
123.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
123.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
122.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
122.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
121.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
121.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
121.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
121.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
121.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
119.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
119.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
118.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
118.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
117.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
117.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
116.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
116.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
116.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
116.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
116.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
115.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
115.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
115.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
115.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
115.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
113.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
113.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
113.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
112.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
112.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
111.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
110.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
110.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
109.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
109.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
108.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
108.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
108.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
108.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
107.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
107.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
107.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
107.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
107.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
106.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
106.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
106.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
106.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
106.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
105.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
105.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
105.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
104.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
104.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
103.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
103.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
101.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
101.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
100.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
100.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
100.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
99.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
98.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
98.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
98.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
97.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
96.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
96.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
96.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
95.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
95.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
94.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
94.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
94.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
93.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
93.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
93.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
92.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
92.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
92.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
91.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
91.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
90.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
90.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
89.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
89.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
88.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
88.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
88.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
88.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
87.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
87.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
87.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
87.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
86.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
86.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
85.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
85.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
83.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
83.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
83.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
83.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
82.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
82.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
82.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
81.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
81.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
81.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
81.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
81.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
81.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
81.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
81.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
81.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
81.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
81.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
79.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
79.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
78.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
78.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
78.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
77.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
77.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
77.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
77.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
77.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
76.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
76.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
75.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
75.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
75.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
74.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
74.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
74.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
74.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
74.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
72.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
72.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
72.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
72.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
72.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
71.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
71.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
70.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
70.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
70.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
69.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
69.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
69.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
69.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
68.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
68.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
68.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
67.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
67.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
67.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
67.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
67.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
67.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
67.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
66.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
66.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
66.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
65.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
65.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
64.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
63.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
63.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
63.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
63.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
63.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
61.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
61.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
61.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
60.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
60.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
59.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
59.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
59.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
59.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
58.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
57.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
57.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
55.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
53.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
52.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
52.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
52.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
51.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
50.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
50.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
49.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
48.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
47.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
47.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
45.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
45.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
43.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
43.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
43.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
42.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
42.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
42.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
41.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
39.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
38.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
37.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
37.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OAF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
117.2
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
502.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
477.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
415.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
397.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
335.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
322.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
307.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
304.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
280.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
277.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
265.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
261.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
260.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
258.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
248.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
224.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
214.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
202.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
201.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
193.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
192.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
192.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
192.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
191.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
190.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
187.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
179.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
179.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
178.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
176.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
172.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
171.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
170.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
169.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
169.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
168.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
166.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
166.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
163.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
160.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
159.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
159.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
158.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
158.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
157.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
156.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
155.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
155.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
154.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
154.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
154.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
153.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
153.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
151.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
151.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
150.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
149.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
148.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
148.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
147.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
147.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
147.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
146.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
146.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
145.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
144.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
141.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
141.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
140.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
139.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
138.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
137.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
137.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
137.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
137.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
135.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
135.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
134.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
132.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
131.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
131.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
130.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
129.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
129.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
128.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
128.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
128.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
127.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
126.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
125.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
124.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
123.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
123.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
122.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
121.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
121.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
118.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
118.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
117.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
116.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
115.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
115.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
115.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
113.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
113.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
113.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
112.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
112.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
109.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
107.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
107.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
106.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
106.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
106.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
104.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
103.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
102.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
102.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
102.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
100.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
99.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
99.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
99.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
99.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
98.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
97.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
97.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
96.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
94.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
93.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
93.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
92.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
92.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
91.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
91.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
90.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
89.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
89.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
89.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
87.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
87.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
87.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
86.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
86.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
86.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
85.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
84.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
83.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
83.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
83.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
83.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
82.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
82.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
82.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
81.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
80.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
77.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
77.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
77.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
77.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
77.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
76.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
75.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
75.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
74.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
74.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
74.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
73.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
73.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
72.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
72.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
72.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
72.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
72.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
71.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
70.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
69.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
67.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
66.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
66.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
61.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
61.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
60.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
58.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
58.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
57.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
57.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
57.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
55.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
55.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
54.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
53.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
49.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
47.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
46.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
41.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
2.2
125
Tumor
1.6
877
Tumor
1.5
777
Tumor
1.4
523
Tumor
1.4
471
Tumor
1.3
425
Tumor
1.3
343
Tumor
1.3
283
Tumor
1.1
635
Tumor
1.0
815
Tumor
1.0
393
Tumor
1.0
375
Tumor
0.9
461
Tumor
0.9
227
Tumor
0.9
515
Tumor
0.8
224
Normal
0.8
313
Tumor
0.7
573
Tumor
0.7
455
Tumor
0.7
365
Tumor
0.6
491
Tumor
0.6
741
Tumor
0.6
641
Tumor
0.6
943
Tumor
0.6
355
Tumor
0.6
817
Tumor
0.6
823
Tumor
0.6
192
Normal
0.6
135
Tumor
0.5
217
Tumor
0.5
865
Tumor
0.5
131
Tumor
0.5
715
Tumor
0.5
557
Tumor
0.5
671
Tumor
0.5
257
Tumor
0.4
627
Tumor
0.4
527
Tumor
0.4
314
Normal
0.4
1041
Tumor
0.4
1027
Tumor
0.4
391
Tumor
0.3
298
Normal
0.3
137
Tumor
0.3
311
Tumor
0.3
513
Tumor
0.3
615
Tumor
0.3
951
Tumor
0.3
1044
Normal
0.3
284
Normal
0.3
141
Tumor
0.3
332
Normal
0.3
862
Normal
0.3
228
Normal
0.3
392
Normal
0.3
911
Tumor
0.3
223
Tumor
0.3
697
Tumor
0.3
297
Tumor
0.3
367
Tumor
0.3
231
Tumor
0.3
713
Tumor
0.3
361
Tumor
0.3
737
Tumor
0.2
525
Tumor
0.2
663
Tumor
0.2
394
Normal
0.2
415
Tumor
0.2
533
Tumor
0.2
211
Tumor
0.2
958
Normal
0.2
232
Normal
0.2
212
Normal
0.2
187
Tumor
0.2
517
Tumor
0.2
1015
Tumor
0.2
742
Normal
0.2
146
Normal
0.2
755
Tumor
0.2
387
Tumor
0.2
538
Normal
0.2
1026
Normal
0.2
953
Tumor
0.1
925
Tumor
0.1
534
Normal
0.1
466
Normal
0.1
975
Tumor
0.1
745
Tumor
0.1
363
Tumor
0.1
145
Tumor
0.1
268
Normal
0.1
723
Tumor
0.1
785
Tumor
0.1
278
Normal
0.1
912
Normal
0.1
524
Normal
0.1
366
Normal
0.1
142
Normal
0.1
487
Tumor
0.1
1042
Normal
0.1
218
Normal
0.1
884
Normal
0.1
195
Tumor
0.1
368
Normal
0.1
921
Tumor
0.1
477
Tumor
0.1
1046
Normal
0.1
357
Tumor
0.1
286
Normal
0.1
546
Normal
0.1
917
Tumor
0.1
277
Tumor
0.1
111
Normal
0.1
354
Normal
0.0
567
Tumor
0.0
976
Normal
0.0
516
Normal
0.0
186
Normal
0.0
1045
Tumor
0.0
526
Normal
0.0
462
Normal
0.0
262
Normal
0.0
258
Normal
0.0
267
Tumor
0.0
147
Tumor
0.0
494
Normal
0.0
528
Normal
0.0
616
Normal
0.0
433
Tumor
0.0
881
Tumor
0.0
423
Tumor
0.0
312
Normal
0.0
756
Normal
0.0
448
Normal
0.0
926
Normal
0.0
484
Normal
0.0
272
Normal
0.0
536
Normal
0.0
451
Tumor
0.0
923
Tumor
0.0
331
Tumor
0.0
385
Tumor
0.0
558
Normal
0.0
384
Normal
0.0
851
Tumor
0.0
514
Normal
0.0
113
Tumor
0.0
138
Normal
0.0
478
Normal
0.0
444
Normal
-0.1
518
Normal
-0.1
813
Tumor
-0.1
1021
Tumor
-0.1
1025
Tumor
-0.1
483
Tumor
-0.1
778
Normal
-0.1
868
Normal
-0.1
161
Tumor
-0.1
916
Normal
-0.1
396
Normal
-0.1
563
Tumor
-0.1
913
Tumor
-0.1
191
Tumor
-0.1
185
Tumor
-0.1
915
Tumor
-0.1
474
Normal
-0.1
327
Tumor
-0.1
874
Normal
-0.1
882
Normal
-0.1
617
Tumor
-0.1
914
Normal
-0.1
537
Tumor
-0.1
1028
Normal
-0.1
162
Normal
-0.1
554
Normal
-0.1
628
Normal
-0.1
786
Normal
-0.1
412
Normal
-0.1
421
Tumor
-0.1
545
Tumor
-0.1
922
Normal
-0.1
376
Normal
-0.1
127
Tumor
-0.1
642
Normal
-0.1
128
Normal
-0.1
716
Normal
-0.1
636
Normal
-0.1
553
Tumor
-0.1
714
Normal
-0.1
148
Normal
-0.1
482
Normal
-0.1
386
Normal
-0.1
698
Normal
-0.1
647
Tumor
-0.1
383
Tumor
-0.2
535
Tumor
-0.2
924
Normal
-0.2
1022
Normal
-0.2
388
Normal
-0.2
172
Normal
-0.2
746
Normal
-0.2
188
Normal
-0.2
472
Normal
-0.2
858
Normal
-0.2
446
Normal
-0.2
126
Normal
-0.2
721
Tumor
-0.2
744
Normal
-0.2
456
Normal
-0.2
864
Normal
-0.2
342
Normal
-0.2
132
Normal
-0.2
818
Normal
-0.2
213
Tumor
-0.2
918
Normal
-0.2
492
Normal
-0.2
738
Normal
-0.2
978
Normal
-0.2
395
Tumor
-0.2
938
Normal
-0.2
696
Normal
-0.2
883
Tumor
-0.2
618
Normal
-0.2
468
Normal
-0.2
1032
Normal
-0.2
414
Normal
-0.2
722
Normal
-0.2
222
Normal
-0.2
114
Normal
-0.2
416
Normal
-0.2
427
Tumor
-0.3
426
Normal
-0.3
866
Normal
-0.3
952
Normal
-0.3
465
Tumor
-0.3
954
Normal
-0.3
136
Normal
-0.3
463
Tumor
-0.3
344
Normal
-0.3
452
Normal
-0.3
852
Normal
-0.3
977
Tumor
-0.3
572
Normal
-0.3
362
Normal
-0.3
196
Normal
-0.3
328
Normal
-0.3
685
Tumor
-0.3
488
Normal
-0.3
743
Tumor
-0.3
1043
Tumor
-0.3
464
Normal
-0.3
498
Normal
-0.3
968
Normal
-0.3
422
Normal
-0.3
878
Normal
-0.3
124
Normal
-0.3
957
Tumor
-0.3
816
Normal
-0.3
285
Tumor
-0.3
981
Tumor
-0.4
447
Tumor
-0.4
352
Normal
-0.4
966
Normal
-0.4
443
Tumor
-0.4
341
Tumor
-0.4
1016
Normal
-0.4
1014
Normal
-0.4
574
Normal
-0.4
964
Normal
-0.4
434
Normal
-0.4
221
Tumor
-0.4
428
Normal
-0.4
271
Tumor
-0.4
353
Tumor
-0.4
967
Tumor
-0.4
944
Normal
-0.4
728
Normal
-0.4
112
Tumor
-0.4
686
Normal
-0.4
982
Normal
-0.4
867
Tumor
-0.4
424
Normal
-0.4
824
Normal
-0.4
358
Normal
-0.4
364
Normal
-0.4
214
Normal
-0.4
724
Normal
-0.5
261
Tumor
-0.5
568
Normal
-0.5
814
Normal
-0.5
481
Tumor
-0.5
857
Tumor
-0.5
984
Normal
-0.5
564
Normal
-0.5
493
Tumor
-0.5
664
Normal
-0.5
983
Tumor
-0.6
436
Normal
-0.6
873
Tumor
-0.6
695
Tumor
-0.6
666
Normal
-0.6
662
Normal
-0.6
497
Tumor
-0.6
351
Tumor
-0.6
861
Tumor
-0.6
661
Tumor
-0.7
435
Tumor
-0.7
356
Normal
-0.7
171
Tumor
-0.7
432
Normal
-0.7
955
Tumor
-0.7
411
Tumor
-0.7
431
Tumor
-0.7
956
Normal
-0.7
963
Tumor
-0.7
648
Normal
-0.7
1031
Tumor
-0.8
672
Normal
-0.8
467
Tumor
-0.8
1013
Tumor
-0.8
413
Tumor
-0.8
473
Tumor
-0.8
665
Tumor
-0.8
445
Tumor
-0.9
571
Tumor
-0.9
937
Tumor
-1.0
123
Tumor
-1.0
727
Tumor
-1.2
965
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.