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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRNP35 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
92.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
60.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
59.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
52.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
51.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
49.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
49.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
47.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
44.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
43.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
42.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
41.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
40.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
40.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
36.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
36.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
36.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
35.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
34.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
34.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
33.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
27.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
19.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRNP35 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
77.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
56.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
53.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
49.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
45.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
42.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
1.1
497
Tumor
0.7
965
Tumor
0.6
123
Tumor
0.6
815
Tumor
0.6
535
Tumor
0.6
698
Normal
0.6
957
Tumor
0.5
145
Tumor
0.5
818
Normal
0.5
1044
Normal
0.5
186
Normal
0.5
443
Tumor
0.5
391
Tumor
0.5
975
Tumor
0.5
743
Tumor
0.5
127
Tumor
0.4
331
Tumor
0.4
456
Normal
0.4
332
Normal
0.4
411
Tumor
0.4
1046
Normal
0.4
672
Normal
0.4
937
Tumor
0.4
824
Normal
0.4
852
Normal
0.4
433
Tumor
0.4
262
Normal
0.4
447
Tumor
0.4
468
Normal
0.4
452
Normal
0.4
662
Normal
0.4
222
Normal
0.4
132
Normal
0.4
172
Normal
0.4
536
Normal
0.4
435
Tumor
0.4
431
Tumor
0.4
465
Tumor
0.4
342
Normal
0.4
425
Tumor
0.4
393
Tumor
0.4
217
Tumor
0.4
271
Tumor
0.4
464
Normal
0.4
571
Tumor
0.4
487
Tumor
0.4
138
Normal
0.3
964
Normal
0.3
697
Tumor
0.3
148
Normal
0.3
467
Tumor
0.3
221
Tumor
0.3
868
Normal
0.3
713
Tumor
0.3
267
Tumor
0.3
723
Tumor
0.3
756
Normal
0.3
1025
Tumor
0.3
455
Tumor
0.3
376
Normal
0.3
354
Normal
0.3
161
Tumor
0.3
191
Tumor
0.3
445
Tumor
0.3
385
Tumor
0.3
514
Normal
0.3
628
Normal
0.3
113
Tumor
0.3
816
Normal
0.3
162
Normal
0.3
462
Normal
0.3
357
Tumor
0.3
1045
Tumor
0.3
715
Tumor
0.3
448
Normal
0.3
858
Normal
0.3
171
Tumor
0.3
188
Normal
0.3
627
Tumor
0.3
727
Tumor
0.3
466
Normal
0.3
257
Tumor
0.3
146
Normal
0.3
387
Tumor
0.3
356
Normal
0.3
491
Tumor
0.3
268
Normal
0.3
1013
Tumor
0.3
737
Tumor
0.3
396
Normal
0.3
823
Tumor
0.3
635
Tumor
0.3
958
Normal
0.3
355
Tumor
0.3
472
Normal
0.2
744
Normal
0.2
142
Normal
0.2
615
Tumor
0.2
192
Normal
0.2
213
Tumor
0.2
745
Tumor
0.2
473
Tumor
0.2
874
Normal
0.2
636
Normal
0.2
463
Tumor
0.2
513
Tumor
0.2
953
Tumor
0.2
481
Tumor
0.2
327
Tumor
0.2
395
Tumor
0.2
126
Normal
0.2
218
Normal
0.2
954
Normal
0.2
526
Normal
0.2
968
Normal
0.2
444
Normal
0.2
364
Normal
0.2
394
Normal
0.2
147
Tumor
0.2
983
Tumor
0.2
358
Normal
0.2
648
Normal
0.2
883
Tumor
0.2
232
Normal
0.2
482
Normal
0.2
195
Tumor
0.2
967
Tumor
0.2
185
Tumor
0.2
665
Tumor
0.2
695
Tumor
0.2
353
Tumor
0.2
416
Normal
0.2
493
Tumor
0.2
641
Tumor
0.2
498
Normal
0.2
724
Normal
0.2
131
Tumor
0.2
388
Normal
0.2
277
Tumor
0.2
384
Normal
0.2
124
Normal
0.2
663
Tumor
0.2
516
Normal
0.2
137
Tumor
0.2
474
Normal
0.2
283
Tumor
0.2
114
Normal
0.2
278
Normal
0.2
642
Normal
0.2
341
Tumor
0.2
488
Normal
0.1
412
Normal
0.1
742
Normal
0.1
882
Normal
0.1
817
Tumor
0.1
361
Tumor
0.1
196
Normal
0.1
864
Normal
0.1
777
Tumor
0.1
362
Normal
0.1
661
Tumor
0.1
911
Tumor
0.1
351
Tumor
0.1
786
Normal
0.1
314
Normal
0.1
924
Normal
0.1
982
Normal
0.1
392
Normal
0.1
483
Tumor
0.1
328
Normal
0.1
851
Tumor
0.1
1021
Tumor
0.1
343
Tumor
0.1
477
Tumor
0.1
434
Normal
0.1
492
Normal
0.1
616
Normal
0.1
415
Tumor
0.1
367
Tumor
0.1
366
Normal
0.1
386
Normal
0.1
951
Tumor
0.1
955
Tumor
0.1
963
Tumor
0.1
517
Tumor
0.1
523
Tumor
0.1
363
Tumor
0.1
484
Normal
0.1
424
Normal
0.1
981
Tumor
0.1
884
Normal
0.1
966
Normal
0.1
451
Tumor
0.1
272
Normal
0.1
741
Tumor
0.1
738
Normal
0.1
227
Tumor
0.1
714
Normal
0.1
944
Normal
0.1
141
Tumor
0.1
728
Normal
0.1
135
Tumor
0.1
368
Normal
0.1
413
Tumor
0.1
478
Normal
0.1
518
Normal
0.1
352
Normal
0.1
414
Normal
0.0
857
Tumor
0.0
785
Tumor
0.0
1015
Tumor
0.0
136
Normal
0.0
564
Normal
0.0
344
Normal
0.0
214
Normal
0.0
664
Normal
0.0
912
Normal
0.0
716
Normal
0.0
432
Normal
0.0
952
Normal
0.0
722
Normal
0.0
1042
Normal
0.0
862
Normal
0.0
878
Normal
0.0
383
Tumor
0.0
671
Tumor
0.0
313
Tumor
0.0
515
Tumor
0.0
375
Tumor
0.0
913
Tumor
0.0
187
Tumor
0.0
568
Normal
0.0
978
Normal
0.0
618
Normal
0.0
228
Normal
0.0
494
Normal
0.0
567
Tumor
0.0
938
Normal
0.0
128
Normal
0.0
436
Normal
0.0
865
Tumor
0.0
1022
Normal
0.0
524
Normal
0.0
471
Tumor
0.0
881
Tumor
0.0
1032
Normal
0.0
984
Normal
0.0
867
Tumor
-0.1
1016
Normal
-0.1
528
Normal
-0.1
778
Normal
-0.1
943
Tumor
-0.1
426
Normal
-0.1
666
Normal
-0.1
446
Normal
-0.1
461
Tumor
-0.1
284
Normal
-0.1
746
Normal
-0.1
721
Tumor
-0.1
866
Normal
-0.1
647
Tumor
-0.1
224
Normal
-0.1
572
Normal
-0.1
977
Tumor
-0.1
976
Normal
-0.1
365
Tumor
-0.1
755
Tumor
-0.1
863
Tumor
-0.1
125
Tumor
-0.1
421
Tumor
-0.1
558
Normal
-0.1
914
Normal
-0.1
261
Tumor
-0.1
916
Normal
-0.1
527
Tumor
-0.1
428
Normal
-0.1
534
Normal
-0.1
554
Normal
-0.1
1014
Normal
-0.1
423
Tumor
-0.1
525
Tumor
-0.1
285
Tumor
-0.1
545
Tumor
-0.1
696
Normal
-0.1
1031
Tumor
-0.1
563
Tumor
-0.1
223
Tumor
-0.1
111
Normal
-0.2
537
Tumor
-0.2
311
Tumor
-0.2
211
Tumor
-0.2
573
Tumor
-0.2
617
Tumor
-0.2
546
Normal
-0.2
286
Normal
-0.2
422
Normal
-0.2
1043
Tumor
-0.2
956
Normal
-0.2
813
Tumor
-0.2
574
Normal
-0.2
873
Tumor
-0.2
685
Tumor
-0.2
557
Tumor
-0.2
538
Normal
-0.2
231
Tumor
-0.2
297
Tumor
-0.2
427
Tumor
-0.2
861
Tumor
-0.2
925
Tumor
-0.2
686
Normal
-0.2
921
Tumor
-0.2
212
Normal
-0.2
922
Normal
-0.3
1026
Normal
-0.3
917
Tumor
-0.3
1027
Tumor
-0.3
1028
Normal
-0.4
915
Tumor
-0.4
814
Normal
-0.4
877
Tumor
-0.4
918
Normal
-0.4
926
Normal
-0.4
923
Tumor
-0.5
258
Normal
-0.5
533
Tumor
-0.5
312
Normal
-0.5
1041
Tumor
-0.5
553
Tumor
-0.6
298
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
