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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRNP35 is not prognostic in Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.7
Number of samples
283
Samples
Sample
Description
TPM
TCGA-VS-A8EJ-01A
0 years, female, white, stage:Stage IIB, dead, 607 days
140.7
TCGA-C5-A2LY-01A
0 years, female, white, stage:Stage IB, alive, 2383 days
124.0
TCGA-FU-A23K-01A
0 years, female, white, stage:Stage IIIB, alive, 372 days
119.1
TCGA-EK-A2RA-01A
0 years, female, stage:Stage IIA, alive, 1246 days
116.1
TCGA-VS-A9V1-01A
0 years, female, white, stage:Stage IVB, dead, 157 days
110.1
TCGA-VS-A9UP-01A
0 years, female, stage:Stage IIA, alive, 1444 days
109.5
TCGA-EK-A2PL-01A
0 years, female, white, stage:Stage IIIB, alive, 13 days
109.5
TCGA-FU-A2QG-01A
0 years, female, white, stage:Stage IB, alive, 579 days
107.5
TCGA-C5-A1ME-01A
0 years, female, white, stage:Stage IB, alive, 1756 days
102.4
TCGA-C5-A2LX-01A
0 years, female, white, stage:Stage IB, alive, 2526 days
101.7
TCGA-DG-A2KJ-01A
0 years, female, stage:Stage IIIB, alive, 2893 days
99.3
TCGA-JW-A5VH-01A
0 years, female, american indian or alaska native, stage:Stage IVB, dead, 100 days
98.3
TCGA-VS-A9V0-01A
0 years, female, stage:Stage IB, alive, 573 days
96.7
TCGA-FU-A3HZ-01A
0 years, female, white, stage:Stage IIA, alive, 1103 days
95.3
TCGA-C5-A1M5-01A
0 years, female, white, stage:Stage IB, dead, 2052 days
94.2
TCGA-EK-A2IP-01A
0 years, female, white, stage:Stage IB, alive, 202 days
93.5
TCGA-LP-A4AW-01A
0 years, female, asian, stage:Stage IA, alive, 27 days
92.3
TCGA-FU-A3TX-01A
0 years, female, stage:Stage IB, alive, 45 days
91.3
TCGA-C5-A3HE-01A
0 years, female, white, stage:Stage IB, alive, 548 days
90.1
TCGA-IR-A3L7-01A
0 years, female, white, stage:Stage IB, alive, 4483 days
85.5
TCGA-PN-A8MA-01A
0 years, female, black or african american, stage:Stage IIB, alive, 90 days
84.9
TCGA-MA-AA41-01A
0 years, female, white, stage:Stage IIB, alive, 279 days
84.1
TCGA-DR-A0ZM-01A
0 years, female, white, stage:Stage IIIB, alive, 1791 days
82.4
TCGA-JW-A852-01A
0 years, female, white, stage:Stage IIB, dead, 252 days
81.7
TCGA-EA-A5ZE-01A
0 years, female, asian, stage:Stage IB, alive, 829 days
80.6
TCGA-VS-A8EI-01A
0 years, female, white, stage:Stage IIB, alive, 729 days
78.4
TCGA-EK-A2PI-01A
0 years, female, white, stage:Stage IIIB, alive, 586 days
75.9
TCGA-VS-A8QC-01A
0 years, female, white, stage:Stage IVA, dead, 350 days
74.7
TCGA-JW-AAVH-01A
0 years, female, white, stage:Stage IB, alive, 552 days
71.6
TCGA-ZJ-A8QQ-01A
0 years, female, white, stage:Stage IIB, alive, 2056 days
71.3
TCGA-FU-A3NI-01A
0 years, female, white, stage:Stage IB, dead, 638 days
70.7
TCGA-VS-A8EH-01A
0 years, female, stage:Stage IIIB, alive, 986 days
68.5
TCGA-VS-A9V5-01A
0 years, female, white, stage:Stage IIB, dead, 494 days
68.2
TCGA-UC-A7PI-01A
0 years, female, white, stage:Stage IB, alive, 2114 days
66.5
TCGA-DS-A7WI-01A
0 years, female, white, stage:Stage IIA, dead, 252 days
66.4
TCGA-VS-A8EB-01A
0 years, female, white, stage:Stage IIIB, dead, 305 days
62.2
TCGA-ZJ-AAXA-01A
0 years, female, white, stage:Stage IB, alive, 43 days
61.7
TCGA-EX-A1H5-01A
0 years, female, black or african american, stage:Stage IIB, alive, 619 days
61.7
TCGA-EA-A43B-01A
0 years, female, white, stage:Stage IB, alive, 791 days
61.3
TCGA-DS-A0VK-01A
0 years, female, white, stage:Stage IB, dead, 1118 days
61.1
TCGA-C5-A3HF-01A
0 years, female, white, stage:Stage IB, dead, 543 days
60.4
TCGA-Q1-A6DT-01A
0 years, female, white, stage:Stage I, dead, 275 days
60.4
TCGA-C5-A2LZ-01A
0 years, female, white, stage:Stage IIIB, dead, 3046 days
59.6
TCGA-EK-A2R7-01A
0 years, female, white, stage:Stage IB, alive, 27 days
59.5
TCGA-C5-A1MJ-01A
0 years, female, white, stage:Stage IB, dead, 14 days
59.4
TCGA-C5-A7CJ-01A
0 years, female, white, stage:Stage IIA, dead, 3097 days
59.3
TCGA-C5-A8YR-01A
0 years, female, white, stage:Stage IB, dead, 837 days
59.1
TCGA-UC-A7PF-01A
0 years, female, stage:Stage IB, dead, 2859 days
59.0
TCGA-C5-A7CM-01A
0 years, female, white, stage:Stage IB, alive, 619 days
56.4
TCGA-DS-A1O9-01A
0 years, female, white, stage:Stage IVA, dead, 266 days
56.3
TCGA-EA-A3HQ-01A
0 years, female, white, stage:Stage II, alive, 1136 days
56.1
TCGA-GH-A9DA-01A
0 years, female, white, stage:Stage IB, alive, 540 days
55.8
TCGA-VS-A9UL-01A
0 years, female, white, stage:Stage IIIB, dead, 442 days
55.1
TCGA-VS-A8Q8-01A
0 years, female, white, stage:Stage IB, dead, 978 days
54.6
TCGA-EA-A3HT-01A
0 years, female, white, stage:Stage IB, alive, 954 days
54.3
TCGA-DS-A7WH-01A
0 years, female, white, stage:Stage IB, alive, 533 days
53.3
TCGA-VS-A9U7-01A
0 years, female, white, stage:Stage IB, alive, 1472 days
53.2
TCGA-IR-A3LC-01A
0 years, female, white, stage:Stage IB, alive, 3935 days
52.8
TCGA-JW-A5VG-01A
0 years, female, american indian or alaska native, stage:Stage IIA, alive, 834 days
52.8
TCGA-VS-A9UD-01A
0 years, female, white, stage:Stage IIIA, alive, 739 days
52.8
TCGA-Q1-A5R1-01A
0 years, female, white, stage:Stage IB, alive, 474 days
52.5
TCGA-C5-A1ML-01A
0 years, female, white, stage:Stage IB, dead, 636 days
52.3
TCGA-UC-A7PD-01A
0 years, female, american indian or alaska native, stage:Stage IB, dead, 355 days
51.5
TCGA-LP-A7HU-01A
0 years, female, asian, stage:Stage II, alive, 406 days
51.5
TCGA-Q1-A5R3-01A
0 years, female, white, stage:'--, alive, 485 days
51.1
TCGA-C5-A1M8-01A
0 years, female, white, stage:Stage IB, alive, 919 days
50.5
TCGA-VS-A94X-01A
0 years, female, black or african american, stage:Stage IIB, dead, 506 days
49.9
TCGA-Q1-A6DV-01A
0 years, female, asian, stage:Stage IB, alive, 491 days
49.2
TCGA-IR-A3LI-01A
0 years, female, white, stage:Stage IVB, alive, 2493 days
48.0
TCGA-EA-A1QS-01A
0 years, female, white, stage:Stage IB, alive, 1203 days
47.7
TCGA-FU-A40J-01A
0 years, female, white, stage:Stage IIIB, alive, 426 days
47.0
TCGA-EA-A44S-01A
0 years, female, white, stage:Stage IIIB, alive, 369 days
46.7
TCGA-IR-A3LH-01A
0 years, female, black or african american, stage:Stage IIA, alive, 2394 days
46.5
TCGA-C5-A901-01A
0 years, female, white, stage:'--, alive, 518 days
46.5
TCGA-EA-A78R-01A
0 years, female, asian, stage:Stage IB, alive, 410 days
46.3
TCGA-IR-A3LB-01A
0 years, female, white, stage:Stage IB, dead, 2032 days
46.3
TCGA-MY-A5BD-01A
0 years, female, white, stage:Stage IIB, alive, 1667 days
45.6
TCGA-C5-A902-01A
0 years, female, black or african american, stage:Stage IB, alive, 149 days
45.0
TCGA-MA-AA3Y-01A
0 years, female, white, stage:Stage IB, alive, 542 days
44.7
TCGA-JX-A3Q8-01A
0 years, female, asian, stage:Stage IB, alive, 1357 days
44.6
TCGA-C5-A7CG-01A
0 years, female, white, stage:Stage IB, alive, 6408 days
44.2
TCGA-VS-A959-01A
0 years, female, stage:Stage IIB, alive, 1561 days
44.2
TCGA-C5-A8XH-01A
0 years, female, white, stage:Stage IB, dead, 1394 days
44.2
TCGA-VS-A8QA-01A
0 years, female, stage:Stage IB, alive, 1099 days
43.9
TCGA-DS-A0VL-01A
0 years, female, white, stage:Stage IB, dead, 1692 days
43.3
TCGA-EA-A1QT-01A
0 years, female, white, stage:Stage IB, alive, 1243 days
43.1
TCGA-EK-A2H0-01A
0 years, female, white, stage:Stage IIB, alive, 1847 days
43.1
TCGA-DS-A1OD-01A
0 years, female, white, stage:Stage IB, alive, 3874 days
42.6
TCGA-HM-A3JK-01A
0 years, female, white, stage:Stage IIA, alive, 632 days
42.6
TCGA-VS-A94W-01A
0 years, female, white, stage:Stage IIB, alive, 1243 days
42.6
TCGA-C5-A7CL-01A
0 years, female, white, stage:Stage IIIB, dead, 471 days
42.4
TCGA-FU-A3EO-01A
0 years, female, white, stage:Stage IIB, alive, 490 days
42.4
TCGA-C5-A8XI-01A
0 years, female, black or african american, stage:Stage IB, alive, 254 days
42.0
TCGA-VS-A9UO-01A
0 years, female, white, stage:Stage IIB, alive, 1456 days
41.9
TCGA-JW-A5VI-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 747 days
41.9
TCGA-EK-A2PK-01A
0 years, female, white, stage:Stage IB, alive, 12 days
41.1
TCGA-C5-A2LS-01A
0 years, female, white, stage:Stage IB, alive, 1345 days
40.8
TCGA-JW-A5VJ-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 652 days
40.5
TCGA-FU-A3WB-01A
0 years, female, white, stage:Stage IIA, alive, 491 days
40.4
TCGA-ZJ-AAX4-01A
0 years, female, white, stage:Stage II, alive, 21 days
40.3
TCGA-VS-A9V2-01A
0 years, female, white, stage:Stage IB, alive, 555 days
39.8
TCGA-EA-A3HS-01A
0 years, female, white, stage:Stage IB, alive, 959 days
39.8
TCGA-EK-A2RM-01A
0 years, female, white, stage:Stage IB, alive, 50 days
39.3
TCGA-DS-A0VM-01A
0 years, female, white, stage:Stage IB, alive, 3589 days
39.3
TCGA-VS-A952-01A
0 years, female, white, stage:Stage IB, alive, 1778 days
39.0
TCGA-EA-A3Y4-01A
0 years, female, white, stage:Stage IB, alive, 1122 days
39.0
TCGA-ZJ-A8QR-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage I, dead, 582 days
38.6
TCGA-HM-A6W2-01A
0 years, female, black or african american, stage:Stage IVB, alive, 287 days
38.3
TCGA-EK-A3GJ-01A
0 years, female, native hawaiian or other pacific islander, stage:Stage IB, alive, 3 days
38.3
TCGA-EA-A4BA-01A
0 years, female, white, stage:Stage IB, alive, 755 days
38.3
TCGA-EX-A69M-01A
0 years, female, white, stage:Stage IB, dead, 253 days
38.3
TCGA-MY-A5BE-01A
0 years, female, black or african american, stage:Stage IB, alive, 1066 days
38.1
TCGA-EK-A2RB-01A
0 years, female, white, stage:Stage IVB, alive, 9 days
38.1
TCGA-RA-A741-01A
0 years, female, white, stage:Stage IIB, alive, 444 days
38.0
TCGA-C5-A907-01A
0 years, female, white, stage:Stage IB, alive, 448 days
38.0
TCGA-C5-A2M2-01A
0 years, female, white, stage:Stage IB, dead, 1011 days
37.8
TCGA-Q1-A5R2-01A
0 years, female, white, stage:'--, alive, 499 days
37.8
TCGA-VS-A9U5-01A
0 years, female, white, stage:Stage IIB, alive, 1535 days
37.7
TCGA-MA-AA3W-01A
0 years, female, white, stage:Stage IB, alive, 685 days
37.5
TCGA-C5-A1MH-01A
0 years, female, white, stage:Stage IIIB, dead, 1186 days
36.7
TCGA-JX-A3PZ-01A
0 years, female, white, stage:Stage IB, dead, 642 days
36.7
TCGA-Q1-A73P-01A
0 years, female, white, stage:Stage IB, alive, 483 days
36.6
TCGA-Q1-A73S-01A
0 years, female, white, stage:Stage IB, alive, 688 days
36.6
TCGA-EA-A6QX-01A
0 years, female, asian, stage:Stage IIIB, alive, 730 days
36.5
TCGA-C5-A1BJ-01A
0 years, female, white, stage:Stage IIB, alive, 4385 days
36.2
TCGA-IR-A3LF-01A
0 years, female, white, stage:Stage IB, alive, 2949 days
36.1
TCGA-JW-A5VL-01A
0 years, female, american indian or alaska native, stage:Stage IB, alive, 474 days
36.0
TCGA-IR-A3LL-01A
0 years, female, white, stage:Stage IB, alive, 1106 days
36.0
TCGA-EK-A2R9-01A
0 years, female, white, stage:Stage IB, alive, 4 days
35.4
TCGA-EA-A3QD-01A
0 years, female, white, stage:Stage IIIB, alive, 397 days
35.2
TCGA-VS-A9UJ-01A
0 years, female, stage:Stage IIB, dead, 52 days
35.2
TCGA-EA-A3HU-01A
0 years, female, white, stage:Stage II, alive, 1013 days
35.1
TCGA-EK-A2RC-01A
0 years, female, stage:Stage IB, alive, 129 days
35.0
TCGA-VS-A8Q9-01A
0 years, female, white, stage:Stage IB, alive, 1630 days
35.0
TCGA-Q1-A73Q-01A
0 years, female, white, stage:Stage I, alive, 284 days
34.9
TCGA-VS-A9UQ-01A
0 years, female, stage:Stage IB, alive, 1263 days
34.8
TCGA-XS-A8TJ-01A
0 years, female, black or african american, stage:Stage IB, alive, 890 days
34.7
TCGA-C5-A7UE-01A
0 years, female, white, stage:Stage IB, alive, 4738 days
34.6
TCGA-C5-A8YT-01A
0 years, female, white, stage:Stage IB, dead, 633 days
34.5
TCGA-FU-A57G-01A
0 years, female, white, stage:Stage IB, alive, 1078 days
34.5
TCGA-DS-A3LQ-01A
0 years, female, stage:Stage IIIB, alive, 699 days
34.2
TCGA-C5-A8XJ-01A
0 years, female, white, stage:Stage IB, alive, 4467 days
34.1
TCGA-JW-A5VK-01A
0 years, female, black or african american, stage:Stage IB, alive, 623 days
33.7
TCGA-FU-A23L-01A
0 years, female, white, stage:Stage IIA, alive, 725 days
33.5
TCGA-EK-A2RL-01A
0 years, female, black or african american, stage:Stage IB, dead, 1453 days
33.4
TCGA-EA-A439-01A
0 years, female, asian, stage:Stage IIA, alive, 965 days
33.3
TCGA-EX-A69L-01A
0 years, female, asian, stage:Stage IB, alive, 602 days
33.2
TCGA-Q1-A73R-01A
0 years, female, white, stage:Stage I, alive, 567 days
32.9
TCGA-FU-A3TQ-01A
0 years, female, white, stage:Stage IIIB, alive, 795 days
32.9
TCGA-VS-A954-01A
0 years, female, stage:Stage IIIB, alive, 1714 days
32.8
TCGA-DS-A1OA-01A
0 years, female, asian, stage:Stage IB, dead, 879 days
32.7
TCGA-EK-A2R8-01A
0 years, female, white, stage:Stage IB, alive, 44 days
32.4
TCGA-EK-A2RK-01A
0 years, female, white, stage:Stage IA, alive, 13 days
32.3
TCGA-DG-A2KH-01A
0 years, female, stage:Stage IB, alive, 34 days
32.3
TCGA-DR-A0ZL-01A
0 years, female, asian, stage:Stage IB, alive, 2669 days
32.2
TCGA-EK-A3GK-01A
0 years, female, white, stage:Stage IB, alive, 15 days
32.1
TCGA-DS-A1OC-01A
0 years, female, white, stage:Stage IB, alive, 376 days
32.0
TCGA-EK-A2IR-01A
0 years, female, white, stage:Stage IB, alive, 3442 days
31.6
TCGA-VS-A9V3-01A
0 years, female, white, stage:Stage IVB, alive, 540 days
31.6
TCGA-EA-A411-01A
0 years, female, white, stage:Stage IB, alive, 747 days
31.3
TCGA-C5-A0TN-01A
0 years, female, black or african american, stage:Stage IB, dead, 348 days
31.0
TCGA-VS-A8QH-01A
0 years, female, white, stage:Stage IB, dead, 1210 days
30.9
TCGA-VS-A94Z-01A
0 years, female, white, stage:Stage IIB, alive, 1015 days
30.9
TCGA-EK-A2RN-01A
0 years, female, white, stage:Stage IB, alive, 71 days
30.8
TCGA-C5-A7UI-01A
0 years, female, black or african american, stage:Stage IB, dead, 2888 days
30.8
TCGA-VS-A9UY-01A
0 years, female, stage:Stage IVB, dead, 555 days
30.6
TCGA-IR-A3LK-01A
0 years, female, white, stage:Stage IB, dead, 908 days
30.5
TCGA-EA-A5ZF-01A
0 years, female, asian, stage:Stage IB, alive, 828 days
30.5
TCGA-4J-AA1J-01A
0 years, female, white, stage:Stage IB, alive, 542 days
30.0
TCGA-C5-A7XC-01A
0 years, female, white, stage:Stage IB, alive, 1551 days
30.0
TCGA-EK-A2H1-01A
0 years, female, white, stage:Stage IB, alive, 799 days
29.9
TCGA-C5-A8ZZ-01A
0 years, female, white, stage:Stage IIB, alive, 636 days
29.9
TCGA-C5-A1MI-01A
0 years, female, white, stage:Stage IB, dead, 1083 days
29.7
TCGA-HM-A3JJ-01A
0 years, female, black or african american, stage:Stage IB, dead, 659 days
29.7
TCGA-R2-A69V-01A
0 years, female, white, stage:Stage IB, alive, 596 days
29.3
TCGA-C5-A905-01A
0 years, female, black or african american, stage:Stage IB, alive, 4879 days
29.1
TCGA-EA-A97N-01A
0 years, female, white, stage:Stage IB, alive, 11 days
29.1
TCGA-VS-A9UB-01A
0 years, female, stage:Stage IIB, alive, 911 days
29.1
TCGA-DS-A7WF-01A
0 years, female, stage:Stage IB, dead, 492 days
29.0
TCGA-IR-A3LA-01A
0 years, female, white, stage:Stage IB, alive, 4172 days
28.9
TCGA-C5-A7X8-01A
0 years, female, white, stage:Stage IB, alive, 83 days
28.9
TCGA-C5-A7CO-01A
0 years, female, white, stage:Stage IB, alive, 4482 days
28.8
TCGA-ZX-AA5X-01A
0 years, female, white, stage:Stage IIIB, alive, 119 days
28.8
TCGA-EA-A5O9-01A
0 years, female, white, stage:Stage IB, alive, 788 days
28.7
TCGA-VS-A8EL-01A
0 years, female, black or african american, stage:Stage IIB, alive, 1992 days
28.6
TCGA-VS-A958-01A
0 years, female, white, stage:Stage IIB, alive, 1525 days
28.6
TCGA-JW-A69B-01A
0 years, female, white, stage:Stage IB, alive, 863 days
28.5
TCGA-VS-A8EK-01A
0 years, female, white, stage:Stage IVA, dead, 829 days
28.4
TCGA-EK-A2PG-01A
0 years, female, black or african american, stage:'--, alive, 46 days
28.3
TCGA-LP-A4AU-01A
0 years, female, asian, stage:Stage IIIB, alive, 343 days
28.2
TCGA-EK-A3GN-01A
0 years, female, white, stage:Stage IIIB, alive, 27 days
28.1
TCGA-ZJ-AAXU-01A
0 years, female, white, stage:Stage IIB, alive, 5 days
27.9
TCGA-C5-A1MK-01A
0 years, female, white, stage:Stage IIIB, dead, 74 days
27.7
TCGA-DG-A2KL-01A
0 years, female, stage:Stage IIA, alive, 1367 days
27.7
TCGA-EA-A556-01A
0 years, female, white, stage:Stage IB, alive, 453 days
27.6
TCGA-VS-A9UV-01A
0 years, female, stage:Stage IVA, dead, 104 days
27.4
TCGA-VS-A8QM-01A
0 years, female, stage:Stage IVB, dead, 951 days
27.4
TCGA-EA-A410-01A
0 years, female, white, stage:Stage IIA, alive, 803 days
27.0
TCGA-C5-A1MQ-01A
0 years, female, white, stage:Stage IIA, alive, 1031 days
27.0
TCGA-EA-A3HR-01A
0 years, female, white, stage:Stage II, alive, 940 days
27.0
TCGA-VS-A8EC-01A
0 years, female, white, stage:Stage IIIB, alive, 1415 days
26.8
TCGA-C5-A2LV-01A
0 years, female, black or african american, stage:Stage IB, alive, 2234 days
26.8
TCGA-EX-A449-01A
0 years, female, white, stage:Stage IVB, alive, 447 days
26.8
TCGA-EK-A2RE-01A
0 years, female, white, stage:Stage IIA, alive, 57 days
26.7
TCGA-VS-A94Y-01A
0 years, female, white, stage:Stage IIB, dead, 144 days
26.6
TCGA-EA-A5ZD-01A
0 years, female, asian, stage:Stage IB, alive, 830 days
26.5
TCGA-JX-A5QV-01A
0 years, female, white, stage:Stage IB, alive, 636 days
26.2
TCGA-MU-A51Y-01A
0 years, female, white, stage:Stage IIA, alive, 854 days
26.0
TCGA-VS-A950-01A
0 years, female, stage:Stage IIIA, alive, 1221 days
25.7
TCGA-DS-A1OB-01A
0 years, female, white, stage:Stage IB, dead, 861 days
25.4
TCGA-LP-A4AX-01A
0 years, female, asian, stage:Stage IB, alive, 380 days
25.3
TCGA-BI-A20A-01A
0 years, female, white, stage:Stage IB, alive, 720 days
25.2
TCGA-LP-A5U3-01A
0 years, female, asian, stage:Stage IB, alive, 25 days
25.2
TCGA-VS-A8QF-01A
0 years, female, white, stage:Stage IIB, alive, 1800 days
25.1
TCGA-VS-A953-01A
0 years, female, stage:Stage IVA, dead, 477 days
25.1
TCGA-VS-A9U6-01A
0 years, female, white, stage:Stage IVB, alive, 1320 days
24.8
TCGA-MU-A5YI-01A
0 years, female, black or african american, stage:Stage IA, alive, 1053 days
24.8
TCGA-C5-A1BL-01A
0 years, female, white, stage:Stage IB, alive, 5271 days
24.5
TCGA-FU-A3HY-01A
0 years, female, white, stage:Stage IB, alive, 954 days
24.2
TCGA-LP-A5U2-01A
0 years, female, asian, stage:Stage IIIB, alive, 9 days
24.2
TCGA-HG-A2PA-01A
0 years, female, white, stage:Stage IB, dead, 773 days
24.2
TCGA-EA-A3QE-01A
0 years, female, white, stage:Stage IB, alive, 761 days
24.1
TCGA-VS-A9UC-01A
0 years, female, stage:Stage IIB, alive, 825 days
24.0
TCGA-DG-A2KK-01A
0 years, female, stage:Stage IIIB, alive, 2496 days
24.0
TCGA-MA-AA43-01A
0 years, female, white, stage:Stage IIIB, alive, 346 days
23.6
TCGA-C5-A1M7-01A
0 years, female, white, stage:Stage IB, alive, 1409 days
23.5
TCGA-C5-A1M9-01A
0 years, female, white, stage:Stage IB, dead, 1065 days
23.5
TCGA-C5-A3HL-01A
0 years, female, white, stage:Stage IB, alive, 621 days
23.5
TCGA-C5-A7CK-01A
0 years, female, white, stage:Stage IVA, dead, 4086 days
23.4
TCGA-MA-AA3X-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 617 days
23.3
TCGA-C5-A7UH-01A
0 years, female, white, stage:Stage IIIB, alive, 3988 days
23.0
TCGA-C5-A2M1-01A
0 years, female, white, stage:Stage IB, alive, 1169 days
22.9
TCGA-C5-A7UC-01A
0 years, female, white, stage:Stage IB, dead, 523 days
22.8
TCGA-JX-A3Q0-01A
0 years, female, black or african american, stage:Stage III, alive, 6375 days
22.7
TCGA-C5-A7X3-01A
0 years, female, white, stage:Stage IIIB, dead, 284 days
22.7
TCGA-VS-A9UM-01A
0 years, female, black or african american, stage:Stage IVB, dead, 829 days
22.5
TCGA-MA-AA42-01A
0 years, female, white, stage:Stage IIB, alive, 259 days
22.4
TCGA-C5-A1MP-01A
0 years, female, black or african american, stage:Stage IB, alive, 109 days
22.3
TCGA-2W-A8YY-01A
0 years, female, white, stage:Stage IB, alive, 533 days
22.1
TCGA-DS-A0VN-01A
0 years, female, white, stage:Stage IB, alive, 3609 days
22.1
TCGA-C5-A1M6-01A
0 years, female, white, stage:Stage IIB, dead, 955 days
22.1
TCGA-VS-A9UZ-01A
0 years, female, white, stage:Stage IB, alive, 2044 days
22.0
TCGA-C5-A1MF-01A
0 years, female, white, stage:Stage IB, alive, 1617 days
22.0
TCGA-FU-A5XV-01A
0 years, female, white, stage:Stage IIIB, alive, 321 days
22.0
TCGA-VS-AA62-01A
0 years, female, white, stage:Stage IIB, dead, 469 days
21.8
TCGA-VS-A9UI-01A
0 years, female, white, stage:Stage IIB, dead, 1372 days
21.8
TCGA-EA-A5FO-01A
0 years, female, white, stage:Stage IB, alive, 815 days
21.3
TCGA-VS-A9UU-01A
0 years, female, stage:Stage IIB, alive, 442 days
21.1
TCGA-UC-A7PG-01A
0 years, female, white, stage:Stage IIIB, dead, 370 days
20.9
TCGA-C5-A8XK-01A
0 years, female, black or african american, stage:'--, alive, 3039 days
20.8
TCGA-EK-A2RJ-01A
0 years, female, white, stage:Stage IB, alive, 53 days
20.8
TCGA-Q1-A6DW-01A
0 years, female, white, stage:Stage I, alive, 534 days
20.8
TCGA-VS-A9V4-01A
0 years, female, white, stage:Stage IVA, dead, 132 days
20.6
TCGA-MY-A5BF-01A
0 years, female, white, stage:Stage IIA, alive, 634 days
20.5
TCGA-HM-A4S6-01A
0 years, female, white, stage:Stage IIIB, alive, 454 days
20.3
TCGA-FU-A3YQ-01A
0 years, female, white, stage:Stage IB, alive, 861 days
20.3
TCGA-MY-A913-01A
0 years, female, black or african american, stage:Stage IIA, alive, 524 days
20.2
TCGA-VS-A8EG-01A
0 years, female, stage:Stage IB, alive, 1386 days
19.9
TCGA-C5-A1MN-01A
0 years, female, white, stage:Stage IIIB, dead, 1245 days
19.8
TCGA-EK-A2RO-01A
0 years, female, american indian or alaska native, stage:Stage IIB, alive, 2 days
19.5
TCGA-DG-A2KM-01A
0 years, female, stage:Stage IB, alive, 1946 days
19.4
TCGA-DS-A5RQ-01A
0 years, female, white, stage:Stage IB, alive, 512 days
19.3
TCGA-EX-A8YF-01A
0 years, female, white, stage:Stage IB, alive, 473 days
19.0
TCGA-C5-A7CH-01A
0 years, female, white, stage:Stage IIB, alive, 4694 days
18.9
TCGA-VS-A9UT-01A
0 years, female, asian, stage:Stage IB, alive, 482 days
18.9
TCGA-EA-A50E-01A
0 years, female, asian, stage:Stage IVA, dead, 227 days
18.8
TCGA-FU-A770-01A
0 years, female, white, stage:Stage IIIB, alive, 34 days
18.4
TCGA-BI-A0VS-01A
0 years, female, white, stage:Stage IB, alive, 1735 days
18.0
TCGA-VS-A9UH-01A
0 years, female, black or african american, stage:Stage IVA, alive, 1427 days
18.0
TCGA-MU-A8JM-01A
0 years, female, white, stage:Stage IB, alive, 607 days
17.5
TCGA-BI-A0VR-01A
0 years, female, white, stage:Stage IIIB, alive, 1505 days
17.4
TCGA-MA-AA3Z-01A
0 years, female, white, stage:Stage IB, alive, 595 days
17.3
TCGA-C5-A7X5-01A
0 years, female, black or african american, stage:Stage IVB, dead, 414 days
16.9
TCGA-C5-A2LT-01A
0 years, female, white, stage:Stage IB, alive, 2226 days
16.8
TCGA-EK-A2GZ-01A
0 years, female, black or african american, stage:Stage IIIB, alive, 383 days
16.8
TCGA-WL-A834-01A
0 years, female, white, stage:'--, alive, 791 days
15.9
TCGA-VS-A957-01A
0 years, female, white, stage:Stage IB, alive, 1688 days
15.7
TCGA-C5-A1BM-01A
0 years, female, black or african american, stage:Stage IB, dead, 2520 days
15.2
TCGA-VS-A9UR-01A
0 years, female, white, stage:Stage IIA, alive, 793 days
15.2
TCGA-Q1-A73O-01A
0 years, female, stage:Stage IB, alive, 428 days
15.1
TCGA-EK-A2PM-01A
0 years, female, white, stage:Stage IIB, alive, 18 days
14.1
TCGA-EX-A3L1-01A
0 years, female, white, stage:Stage IIA, alive, 463 days
14.0
TCGA-C5-A8YQ-01A
0 years, female, white, stage:Stage IB, dead, 715 days
14.0
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CERVICAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
