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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIPSNAP1 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.3
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
140.4
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
116.9
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
116.0
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
109.7
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
103.3
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
96.7
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
87.4
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
86.7
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
86.7
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
82.0
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
81.0
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
80.9
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
80.8
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
79.4
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
73.5
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
72.0
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
67.5
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
64.9
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
63.7
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
61.9
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
61.9
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
61.4
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
61.1
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
60.0
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
59.5
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
59.2
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
58.4
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
58.2
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
57.1
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
56.9
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
56.8
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
56.8
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
52.6
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
52.2
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
51.2
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
51.0
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
49.3
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
46.6
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
46.0
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
45.8
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
45.5
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
44.9
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
44.5
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
41.8
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
41.3
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
40.8
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
40.8
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
39.7
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
39.6
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
39.5
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
36.9
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
34.4
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
34.4
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
34.3
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
29.8
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
29.1
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
28.4
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
28.3
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
27.9
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
25.6
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
24.6
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
22.5
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
21.5
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIPSNAP1 is potential prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
63.6
Number of samples
521
Samples
Sample
Description
TPM
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
216.0
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
200.0
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
181.2
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
177.4
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
157.9
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
154.3
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
153.2
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
152.1
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
151.5
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
147.3
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
144.5
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
144.1
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
139.5
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
139.3
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
139.0
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
135.5
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
125.0
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
124.7
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
123.3
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
123.0
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
122.9
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
121.0
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
119.9
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
119.6
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
118.9
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
118.8
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
118.4
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
114.7
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
114.7
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
114.5
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
114.2
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
114.0
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
112.4
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
109.9
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
108.6
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
108.5
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
107.9
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
107.4
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
105.9
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
105.7
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
105.0
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
104.4
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
104.1
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
103.9
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
103.0
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
102.5
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
102.2
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
102.0
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
101.8
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
101.6
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
101.4
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
100.6
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
100.1
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
100.0
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
99.5
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
99.5
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
99.1
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
98.9
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
98.6
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
98.5
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
98.1
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
97.9
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
97.2
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
97.0
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
96.9
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
96.6
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
96.4
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
95.8
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
95.6
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
95.5
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
95.4
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
94.9
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
94.5
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
93.8
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
93.3
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
93.2
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
92.7
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
92.7
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
92.6
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
92.2
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
92.1
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
92.1
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
91.9
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
91.8
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
91.2
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
90.9
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
90.8
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
90.7
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
90.2
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
90.2
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
89.6
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
89.2
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
88.3
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
88.3
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
88.0
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
88.0
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
87.8
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
87.5
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
87.4
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
87.3
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
87.0
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
87.0
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
86.9
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
86.8
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
86.8
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
86.8
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
86.5
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
86.4
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
85.8
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
85.7
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
84.8
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
84.7
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
84.3
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
84.3
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
84.2
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
84.2
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
83.9
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
83.8
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
83.8
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
83.5
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
83.5
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
83.4
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
83.3
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
83.1
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
82.8
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
82.1
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
82.0
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
82.0
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
82.0
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
81.7
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
81.4
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
81.3
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
81.3
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
81.1
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
80.9
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
80.9
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
80.6
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
80.2
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
80.0
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
80.0
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
79.5
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
79.5
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
79.1
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
78.9
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
78.6
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
78.6
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
78.5
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
78.4
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
78.4
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
78.0
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
77.8
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
77.5
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
77.4
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
77.1
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
77.0
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
76.9
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
76.8
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
76.7
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
76.6
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
76.6
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
76.5
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
76.4
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
75.9
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
75.8
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
75.4
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
75.3
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
75.3
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
75.1
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
75.0
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
74.8
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
74.5
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
73.9
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
73.9
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
72.9
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
72.9
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
72.6
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
72.2
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
72.2
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
72.0
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
72.0
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
72.0
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
71.8
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
71.8
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
71.6
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
71.5
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
71.5
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
71.2
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
71.1
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
71.1
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
70.9
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
70.5
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
70.4
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
70.3
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
70.1
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
70.1
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
70.1
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
69.8
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
69.8
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
69.6
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
69.6
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
69.4
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
69.4
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
69.4
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
69.3
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
69.3
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
68.8
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
68.4
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
68.0
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
68.0
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
68.0
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
67.9
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
67.7
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
67.6
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
67.4
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
67.2
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
67.1
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
66.9
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
66.9
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
66.9
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
66.6
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
66.4
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
66.4
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
66.3
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
66.3
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
66.2
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
66.1
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
66.0
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
66.0
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
65.9
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
65.6
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
65.4
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
65.1
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
64.7
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
64.7
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
64.6
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
64.6
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
64.5
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
64.4
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
64.1
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
64.1
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
64.0
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
63.9
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
63.6
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
63.5
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
63.4
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
63.2
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
63.1
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
62.4
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
62.3
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
61.5
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
61.4
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
61.3
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
61.1
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
61.1
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
61.0
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
60.8
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
60.8
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
60.7
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
60.7
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
60.6
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
60.4
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
59.4
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
58.9
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
58.9
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
58.7
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
58.5
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
58.5
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
58.2
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
58.0
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
57.9
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
57.7
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
57.5
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
57.3
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
57.1
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
56.9
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
56.6
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
56.6
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
56.2
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
56.0
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
55.9
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
55.9
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
55.8
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
55.7
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
55.7
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
55.6
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
55.5
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
55.5
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
55.5
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
55.4
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
55.3
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
55.3
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
55.2
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
55.2
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
54.8
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
54.8
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
54.7
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
54.6
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
54.5
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
54.1
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
54.0
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
53.8
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
53.8
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
53.6
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
53.3
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
52.8
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
52.6
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
52.5
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
52.4
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
52.1
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
52.0
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
52.0
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
51.9
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
51.9
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
51.8
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
51.7
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
51.7
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
51.6
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
51.5
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
51.3
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
51.2
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
51.2
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
51.1
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
51.0
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
50.5
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
50.3
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
50.1
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
50.0
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
50.0
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
49.8
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
49.4
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
49.4
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
49.1
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
49.0
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
49.0
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
48.9
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
48.9
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
48.7
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
48.7
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
48.5
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
48.5
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
48.2
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
48.1
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
48.0
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
48.0
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
47.9
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
47.8
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
47.8
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
47.7
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
47.7
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
47.7
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
47.6
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
47.5
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
47.1
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
46.9
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
46.8
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
46.7
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
46.6
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
46.5
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
46.4
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
45.8
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
45.5
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
45.4
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
45.2
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
45.1
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
45.0
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
44.8
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
44.8
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
44.5
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
44.3
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
43.9
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
43.6
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
43.5
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
43.5
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
43.5
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
43.4
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
43.1
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
42.9
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
42.5
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
42.4
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
42.4
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
42.3
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
42.3
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
42.3
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
42.2
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
42.1
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
42.0
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
41.8
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
41.8
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
41.7
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
41.7
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
41.6
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
41.6
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
41.5
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
41.5
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
41.4
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
41.4
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
41.4
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
40.8
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
40.5
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
40.4
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
40.3
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
40.1
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
39.8
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
39.7
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
39.6
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
39.5
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
39.2
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
39.2
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
39.1
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
39.0
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
39.0
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
38.9
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
38.7
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
38.6
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
38.6
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
38.3
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
38.1
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
37.9
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
37.8
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
37.8
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
37.7
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
37.6
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
37.4
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
37.1
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
36.9
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
36.5
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
36.5
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
36.4
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
36.3
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
36.1
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
35.9
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
35.6
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
35.6
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
35.4
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
35.4
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
35.3
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
34.6
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
34.5
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
33.9
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
33.9
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
33.5
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
33.4
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
33.2
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
33.1
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
33.1
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
33.0
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
32.9
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
32.9
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
32.7
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
32.6
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
32.6
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
32.0
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
31.6
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
31.4
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
31.2
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
31.0
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
30.8
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
30.6
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
30.5
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
30.5
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
30.3
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
29.5
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
29.2
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
28.9
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
28.7
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
28.7
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
28.6
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
28.5
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
28.2
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
28.0
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
28.0
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
27.5
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
27.3
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
27.2
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
27.2
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
26.9
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
26.1
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
26.1
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
25.9
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
25.4
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
24.9
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
24.7
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
24.5
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
24.3
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
23.5
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
23.5
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
23.2
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
23.1
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
23.1
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
22.4
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
22.2
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
21.7
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
21.7
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
20.6
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
20.1
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
19.8
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
19.4
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
19.2
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
19.1
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
19.1
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
19.0
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
18.7
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
18.7
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
18.6
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
18.5
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
18.3
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
17.8
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
17.3
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
16.9
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
16.7
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
16.4
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
15.4
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
14.0
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
13.9
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
13.9
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
13.7
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
11.8
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
9.1
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
8.9
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
7.1
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIPSNAP1 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
71.2
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
206.4
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
152.8
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
138.5
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
133.6
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
132.8
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
123.3
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
113.1
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
112.4
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
106.2
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
105.4
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
104.5
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
99.0
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
98.5
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
98.4
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
98.3
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
97.7
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
97.5
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
95.5
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
94.8
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
93.2
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
93.2
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
92.9
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
92.3
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
91.4
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
85.5
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
85.2
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
84.1
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
83.7
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
82.7
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
82.3
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
79.2
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
78.8
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
78.2
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
77.9
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
77.1
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
75.5
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
75.0
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
75.0
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
74.7
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
72.4
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
69.9
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
69.8
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
68.6
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
67.9
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
67.6
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
67.3
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
67.0
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
66.9
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
65.9
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
65.8
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
64.8
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
64.3
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
64.2
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
63.6
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
63.3
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
62.8
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
61.9
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
61.0
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
60.4
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
60.4
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
59.9
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
59.9
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
59.8
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
59.6
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
58.7
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
57.9
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
57.7
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
57.7
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
57.4
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
57.2
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
56.8
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
55.2
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
54.6
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
54.4
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
53.7
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
53.5
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
53.0
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
51.8
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
50.2
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
50.0
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
47.5
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
46.4
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
46.1
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
43.9
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
43.7
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
43.5
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
43.4
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
42.2
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
42.1
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
41.9
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
40.4
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
39.1
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
39.1
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
38.1
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
36.9
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
33.5
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
26.6
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
24.7
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIPSNAP1 is potential prognostic, high expression is favorable in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
93.5
Number of samples
282
Samples
Sample
Description
TPM
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
594.8
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
324.0
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
278.8
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
272.1
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
270.4
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
260.7
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
249.9
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
248.5
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
246.8
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
236.5
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
219.6
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
214.3
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
211.6
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
209.0
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
194.0
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
182.8
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
175.9
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
170.7
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
169.8
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
169.4
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
167.8
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
164.9
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
164.9
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
163.8
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
161.4
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
155.3
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
150.2
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
149.3
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
147.9
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
144.9
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
144.2
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
143.5
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
139.5
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
138.4
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
137.8
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
137.8
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
137.3
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
137.1
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
136.7
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
136.4
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
135.6
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
135.1
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
133.4
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
133.1
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
132.3
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
131.8
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
131.8
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
130.4
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
130.3
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
128.6
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
127.2
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
126.6
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
125.3
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
124.6
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
123.9
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
123.4
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
123.1
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
122.7
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
122.5
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
122.3
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
121.9
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
121.3
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
119.9
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
119.9
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
119.7
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
119.0
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
118.7
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
116.5
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
116.4
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
116.4
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
116.1
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
116.0
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
115.7
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
115.3
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
114.8
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
114.7
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
114.4
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
114.2
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
113.6
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
112.5
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
112.0
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
111.9
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
111.8
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
110.7
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
109.4
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
109.2
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
108.8
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
107.7
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
107.5
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
107.0
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
105.1
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
105.1
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
104.6
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
104.1
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
103.9
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
103.5
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
102.8
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
102.6
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
101.8
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
101.6
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
101.5
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
101.4
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
100.4
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
100.2
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
99.7
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
99.1
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
98.3
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
98.0
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
97.9
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
97.5
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
97.4
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
97.3
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
96.6
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
96.1
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
95.3
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
93.9
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
92.5
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
91.4
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
91.3
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
90.7
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
90.4
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
89.9
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
89.8
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
89.0
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
88.9
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
88.7
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
88.3
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
88.0
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
87.9
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
87.9
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
87.8
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
87.7
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
87.4
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
87.1
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
87.1
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
87.0
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
86.9
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
86.8
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
86.8
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
85.1
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
84.6
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
84.6
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
84.5
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
84.3
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
82.9
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
82.8
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
82.4
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
82.2
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
82.1
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
82.0
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
81.0
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
80.8
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
79.9
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
78.4
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
78.2
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
77.5
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
77.1
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
76.9
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
76.9
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
76.3
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
75.9
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
75.3
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
75.0
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
74.7
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
74.3
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
74.0
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
74.0
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
73.8
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
73.7
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
73.1
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
72.9
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
72.4
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
72.3
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
72.2
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
71.6
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
71.3
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
71.3
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
70.7
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
70.1
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
69.8
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
68.5
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
68.3
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
66.8
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
66.3
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
65.9
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
65.4
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
65.2
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
65.2
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
65.0
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
64.9
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
64.5
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
63.4
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
63.2
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
63.2
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
63.1
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
62.4
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
61.9
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
61.1
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
61.0
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
60.4
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
60.2
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
59.6
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
59.4
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
59.2
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
58.7
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
58.3
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
58.1
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
58.1
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
57.7
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
55.8
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
55.1
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
55.1
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
54.7
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
54.0
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
53.6
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
53.4
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
53.2
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
53.2
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
53.1
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
52.7
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
52.6
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
52.5
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
52.5
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
52.4
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
52.3
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
52.3
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
51.4
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
51.2
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
50.9
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
50.6
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
50.5
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
50.4
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
50.2
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
49.4
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
49.4
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
49.0
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
48.5
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
48.4
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
47.8
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
47.7
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
47.6
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
46.7
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
46.4
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
45.6
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
45.5
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
44.3
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
44.0
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
43.7
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
43.0
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
43.0
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
43.0
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
42.8
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
42.6
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
42.6
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
40.7
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
40.6
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
40.2
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
38.3
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
37.7
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
37.7
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
37.5
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
37.4
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
36.0
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
35.5
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
35.2
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
35.0
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
34.0
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
32.4
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
26.7
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
18.7
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
18.5
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
18.5
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
17.4
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
15.1
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
12.5
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
9.3
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
5.3
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
3.6
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
3.0
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
2.0
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
1.5
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
1.3
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0088780001
Normal
1.0
CPT0092740003
Normal
0.9
CPT0009080003
Normal
0.9
CPT0012770003
Normal
0.9
CPT0006950001
Normal
0.8
CPT0078670001
Normal
0.7
CPT0079000001
Normal
0.7
CPT0065450001
Normal
0.7
CPT0092800003
Normal
0.7
CPT0025610001
Normal
0.7
CPT0066430001
Normal
0.7
CPT0006730001
Normal
0.7
CPT0089480003
Normal
0.7
CPT0020020001
Normal
0.6
CPT0013790003
Normal
0.6
CPT0010170001
Normal
0.6
CPT0077140001
Normal
0.6
CPT0025060001
Normal
0.6
CPT0000790001
Normal
0.6
CPT0064400001
Normal
0.6
CPT0014350001
Normal
0.6
CPT0020130001
Normal
0.6
CPT0069010001
Normal
0.6
CPT0081620001
Normal
0.6
CPT0092310003
Normal
0.6
CPT0007870001
Normal
0.6
CPT0012090003
Normal
0.6
CPT0088920001
Normal
0.5
CPT0076350001
Normal
0.5
CPT0078840001
Normal
0.5
CPT0012570003
Normal
0.5
CPT0077500001
Normal
0.5
CPT0007470001
Normal
0.5
CPT0001350001
Normal
0.5
CPT0086890003
Normal
0.5
CPT0023710001
Normal
0.5
CPT0023360001
Normal
0.5
CPT0087050003
Normal
0.5
CPT0078800003
Tumor
0.5
CPT0002270011
Tumor
0.5
CPT0026420001
Normal
0.5
CPT0000890001
Normal
0.4
CPT0082010001
Normal
0.4
CPT0012670003
Tumor
0.4
CPT0086370003
Normal
0.4
CPT0088710001
Normal
0.4
CPT0089040001
Normal
0.4
CPT0088500001
Normal
0.4
CPT0014130001
Normal
0.4
CPT0001500009
Tumor
0.4
CPT0009060003
Tumor
0.4
CPT0078940001
Normal
0.4
CPT0063640001
Normal
0.4
CPT0018250001
Normal
0.3
CPT0078530001
Normal
0.3
CPT0079430001
Normal
0.3
CPT0012290003
Normal
0.3
CPT0088640003
Normal
0.3
CPT0017450001
Normal
0.3
CPT0014470001
Normal
0.3
CPT0019160001
Normal
0.3
CPT0012900004
Tumor
0.3
CPT0075570001
Normal
0.3
CPT0086970003
Normal
0.2
CPT0088570001
Normal
0.2
CPT0086830003
Normal
0.2
CPT0063330001
Normal
0.2
CPT0065820001
Normal
0.2
CPT0012920003
Normal
0.2
CPT0009020003
Normal
0.1
CPT0001510001
Normal
0.1
CPT0066520001
Normal
0.1
CPT0024680001
Normal
0.1
CPT0025920001
Normal
0.1
CPT0001230001
Normal
0.1
CPT0001550001
Normal
0.1
CPT0000660001
Normal
0.0
CPT0024670003
Tumor
0.0
CPT0002370001
Normal
0.0
CPT0078660003
Tumor
0.0
CPT0079180003
Tumor
0.0
CPT0006530001
Normal
0.0
CPT0001190001
Normal
0.0
CPT0015730003
Tumor
0.0
CPT0086870003
Tumor
-0.1
CPT0069190001
Normal
-0.1
CPT0088690003
Tumor
-0.2
CPT0020120003
Tumor
-0.2
CPT0007320003
Tumor
-0.2
CPT0078510003
Tumor
-0.2
CPT0064370003
Tumor
-0.2
CPT0077310003
Tumor
-0.2
CPT0012640003
Normal
-0.2
CPT0012550003
Tumor
-0.3
CPT0088480003
Tumor
-0.3
CPT0023350003
Tumor
-0.3
CPT0089460004
Tumor
-0.3
CPT0065750003
Tumor
-0.3
CPT0069000003
Tumor
-0.3
CPT0010120001
Normal
-0.3
CPT0007860003
Tumor
-0.3
CPT0076330003
Tumor
-0.3
CPT0019990003
Tumor
-0.3
CPT0092290003
Tumor
-0.3
CPT0006440003
Tumor
-0.3
CPT0000780007
Tumor
-0.4
CPT0079300001
Normal
-0.4
CPT0075170001
Normal
-0.4
CPT0075560003
Tumor
-0.4
CPT0026410003
Tumor
-0.4
CPT0001540009
Tumor
-0.4
CPT0001270001
Normal
-0.4
CPT0025170003
Tumor
-0.4
CPT0079410003
Tumor
-0.4
CPT0010110003
Tumor
-0.4
CPT0078830003
Tumor
-0.5
CPT0014450004
Tumor
-0.5
CPT0065810003
Tumor
-0.5
CPT0063320003
Tumor
-0.5
CPT0025050003
Tumor
-0.5
CPT0079270003
Tumor
-0.5
CPT0079510001
Normal
-0.5
CPT0009000003
Tumor
-0.5
CPT0023690003
Tumor
-0.5
CPT0086820003
Tumor
-0.5
CPT0015810003
Tumor
-0.5
CPT0087040003
Tumor
-0.5
CPT0088970003
Tumor
-0.5
CPT0014160003
Tumor
-0.5
CPT0014370004
Tumor
-0.5
CPT0066470004
Tumor
-0.6
CPT0025880003
Tumor
-0.6
CPT0000870016
Tumor
-0.6
CPT0001260009
Tumor
-0.6
CPT0078930003
Tumor
-0.6
CPT0079480003
Tumor
-0.6
CPT0086030003
Tumor
-0.6
CPT0086360003
Tumor
-0.6
CPT0006900003
Tumor
-0.6
CPT0089020003
Tumor
-0.6
CPT0025110003
Tumor
-0.6
CPT0065430003
Tumor
-0.6
CPT0000640003
Tumor
-0.7
CPT0012370003
Tumor
-0.7
CPT0085670003
Tumor
-0.7
CPT0001180009
Tumor
-0.7
CPT0077320001
Normal
-0.7
CPT0010160003
Tumor
-0.7
CPT0012280003
Tumor
-0.7
CPT0075720003
Tumor
-0.7
CPT0092790003
Tumor
-0.7
CPT0063630003
Tumor
-0.7
CPT0011410003
Tumor
-0.7
CPT0077110003
Tumor
-0.7
CPT0001220008
Tumor
-0.7
CPT0002350011
Tumor
-0.7
CPT0015910003
Tumor
-0.7
CPT0012080003
Tumor
-0.7
CPT0092160003
Tumor
-0.7
CPT0088900003
Tumor
-0.7
CPT0077490003
Tumor
-0.8
CPT0081600003
Tumor
-0.8
CPT0071150004
Tumor
-0.8
CPT0012180003
Tumor
-0.8
CPT0088630003
Tumor
-0.8
CPT0084560003
Tumor
-0.8
CPT0011240003
Tumor
-0.8
CPT0025230003
Tumor
-0.8
CPT0081990003
Tumor
-0.8
CPT0006630003
Tumor
-0.8
CPT0081880003
Tumor
-0.9
CPT0092190003
Normal
-0.9
CPT0025580004
Tumor
-0.9
CPT0069160003
Tumor
-0.9
CPT0088760003
Tumor
-0.9
CPT0066480003
Tumor
-0.9
CPT0084590001
Normal
-0.9
CPT0086950003
Tumor
-0.9
CPT0019130003
Tumor
-1.0
CPT0021240003
Tumor
-1.0
CPT0017410003
Tumor
-1.0
CPT0075130003
Tumor
-1.0
CPT0017850003
Tumor
-1.0
CPT0065930003
Tumor
-1.0
CPT0079230003
Tumor
-1.1
CPT0078990003
Tumor
-1.1
CPT0065690003
Tumor
-1.1
CPT0025290003
Tumor
-1.1
CPT0092730003
Tumor
-1.2
CPT0065870003
Tumor
-1.2
CPT0088550004
Tumor
-1.2
CPT0025350003
Tumor
-1.2
CPT0079380003
Tumor
-1.3
CPT0001340003
Tumor
-1.5
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.