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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIPSNAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
116.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
406.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
315.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
285.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
268.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
265.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
262.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
253.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
251.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
249.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
248.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
241.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
237.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
234.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
232.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
222.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
217.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
214.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
212.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
212.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
211.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
209.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
206.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
204.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
201.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
201.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
200.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
200.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
199.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
197.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
197.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
196.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
195.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
195.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
192.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
190.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
189.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
188.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
187.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
185.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
185.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
184.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
182.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
182.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
178.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
176.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
176.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
175.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
175.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
173.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
172.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
171.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
171.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
170.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
169.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
169.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
167.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
167.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
166.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
166.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
166.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
165.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
165.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
164.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
164.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
163.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
163.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
163.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
162.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
162.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
161.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
161.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
161.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
158.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
158.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
158.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
157.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
157.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
157.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
154.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
153.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
153.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
152.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
151.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
151.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
147.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
147.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
147.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
147.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
147.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
146.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
146.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
146.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
146.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
146.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
145.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
144.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
144.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
143.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
142.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
141.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
140.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
138.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
138.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
138.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
138.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
138.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
137.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
137.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
137.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
136.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
136.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
136.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
136.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
135.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
135.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
135.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
134.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
134.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
134.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
134.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
133.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
133.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
133.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
130.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
129.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
129.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
129.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
129.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
129.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
128.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
128.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
128.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
128.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
127.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
127.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
126.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
126.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
126.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
125.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
125.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
125.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
124.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
123.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
123.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
122.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
121.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
121.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
121.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
120.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
120.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
120.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
120.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
120.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
119.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
119.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
119.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
119.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
118.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
117.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
117.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
117.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
116.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
116.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
116.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
115.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
115.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
115.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
114.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
114.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
113.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
112.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
112.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
110.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
110.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
110.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
110.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
109.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
109.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
108.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
108.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
107.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
107.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
107.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
107.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
106.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
105.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
105.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
105.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
104.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
103.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
103.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
103.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
102.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
102.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
102.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
102.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
101.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
101.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
101.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
101.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
100.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
100.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
100.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
100.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
100.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
99.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
98.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
97.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
97.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
97.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
96.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
96.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
96.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
94.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
94.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
94.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
93.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
93.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
93.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
93.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
93.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
92.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
92.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
92.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
91.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
90.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
90.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
90.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
89.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
88.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
88.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
87.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
87.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
87.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
86.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
86.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
86.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
86.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
86.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
86.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
85.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
85.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
84.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
84.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
84.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
83.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
83.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
83.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
83.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
83.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
83.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
83.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
82.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
82.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
82.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
81.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
81.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
80.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
80.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
80.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
80.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
80.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
79.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
79.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
78.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
78.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
77.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
77.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
77.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
77.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
77.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
76.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
76.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
76.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
76.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
75.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
75.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
75.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
74.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
74.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
74.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
74.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
74.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
73.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
73.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
73.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
73.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
72.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
72.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
71.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
71.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
70.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
70.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
70.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
70.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
69.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
69.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
68.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
68.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
68.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
67.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
67.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
67.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
67.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
67.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
66.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
66.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
66.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
66.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
65.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
65.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
63.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
62.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
62.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
61.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
61.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
61.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
60.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
59.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
58.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
58.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
57.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
57.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
56.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
56.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
56.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
55.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
53.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
53.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
52.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
51.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
51.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
50.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
50.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
49.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
49.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
49.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
49.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
48.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
46.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
39.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
38.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
32.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NIPSNAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
118.7
Number of samples
231
Samples
Sample
Description
TPM
DO45173
0 years, male, NA, stage:3, alive, 1170 days
476.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
402.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
377.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
319.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
306.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
293.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
273.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
267.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
264.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
256.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
256.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
242.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
236.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
231.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
228.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
222.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
214.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
211.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
210.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
204.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
204.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
204.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
201.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
200.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
195.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
190.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
189.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
188.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
187.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
180.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
176.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
176.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
173.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
169.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
169.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
167.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
163.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
162.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
162.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
161.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
161.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
159.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
159.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
158.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
158.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
157.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
155.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
155.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
151.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
150.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
149.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
149.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
148.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
148.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
146.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
144.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
144.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
144.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
144.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
144.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
143.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
143.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
143.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
142.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
142.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
142.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
142.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
141.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
140.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
139.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
139.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
137.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
137.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
136.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
135.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
134.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
133.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
132.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
131.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
130.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
129.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
129.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
129.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
128.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
127.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
127.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
126.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
126.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
126.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
125.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
125.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
124.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
122.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
121.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
121.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
121.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
121.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
120.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
119.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
119.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
117.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
116.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
116.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
116.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
116.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
114.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
114.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
114.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
112.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
112.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
112.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
112.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
111.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
111.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
110.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
108.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
107.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
106.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
106.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
105.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
104.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
104.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
103.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
102.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
102.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
102.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
101.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
100.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
100.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
100.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
100.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
99.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
99.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
97.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
97.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
95.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
95.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
95.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
95.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
94.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
93.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
93.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
92.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
92.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
92.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
91.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
91.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
91.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
91.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
90.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
89.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
89.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
88.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
88.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
87.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
87.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
86.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
85.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
84.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
84.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
81.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
80.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
80.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
80.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
79.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
78.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
78.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
77.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
76.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
75.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
75.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
74.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
74.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
73.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
73.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
73.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
71.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
71.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
71.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
71.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
70.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
69.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
68.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
68.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
67.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
65.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
64.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
64.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
63.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
63.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
59.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
59.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
59.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
58.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
58.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
57.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
56.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
56.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
56.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
56.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
55.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
54.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
54.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
53.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
52.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
50.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
49.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
39.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.4
925
Tumor
1.0
341
Tumor
0.9
127
Tumor
0.8
452
Normal
0.8
186
Normal
0.8
443
Tumor
0.8
743
Tumor
0.8
172
Normal
0.7
128
Normal
0.7
332
Normal
0.7
465
Tumor
0.6
331
Tumor
0.6
358
Normal
0.6
112
Tumor
0.6
314
Normal
0.6
162
Normal
0.6
342
Normal
0.6
426
Normal
0.6
222
Normal
0.6
648
Normal
0.6
436
Normal
0.6
636
Normal
0.6
388
Normal
0.6
196
Normal
0.5
414
Normal
0.5
564
Normal
0.5
641
Tumor
0.5
571
Tumor
0.5
786
Normal
0.5
232
Normal
0.5
742
Normal
0.5
394
Normal
0.5
424
Normal
0.5
113
Tumor
0.5
124
Normal
0.5
727
Tumor
0.5
428
Normal
0.5
462
Normal
0.5
258
Normal
0.5
1045
Tumor
0.5
278
Normal
0.4
267
Tumor
0.4
664
Normal
0.4
148
Normal
0.4
446
Normal
0.4
464
Normal
0.4
145
Tumor
0.4
354
Normal
0.4
392
Normal
0.4
223
Tumor
0.4
422
Normal
0.4
568
Normal
0.4
111
Normal
0.4
466
Normal
0.4
517
Tumor
0.4
344
Normal
0.4
214
Normal
0.4
298
Normal
0.4
746
Normal
0.4
862
Normal
0.4
468
Normal
0.4
642
Normal
0.4
132
Normal
0.4
615
Tumor
0.4
376
Normal
0.4
618
Normal
0.4
185
Tumor
0.4
114
Normal
0.4
723
Tumor
0.4
432
Normal
0.4
698
Normal
0.4
396
Normal
0.3
912
Normal
0.3
218
Normal
0.3
365
Tumor
0.3
262
Normal
0.3
445
Tumor
0.3
824
Normal
0.3
818
Normal
0.3
146
Normal
0.3
662
Normal
0.3
272
Normal
0.3
513
Tumor
0.3
138
Normal
0.3
628
Normal
0.3
171
Tumor
0.3
421
Tumor
0.3
756
Normal
0.3
136
Normal
0.3
616
Normal
0.3
352
Normal
0.3
744
Normal
0.3
1043
Tumor
0.3
882
Normal
0.3
356
Normal
0.3
1026
Normal
0.2
135
Tumor
0.2
672
Normal
0.2
572
Normal
0.2
864
Normal
0.2
366
Normal
0.2
357
Tumor
0.2
738
Normal
0.2
695
Tumor
0.2
1046
Normal
0.2
878
Normal
0.2
456
Normal
0.2
563
Tumor
0.2
231
Tumor
0.2
126
Normal
0.2
858
Normal
0.2
488
Normal
0.2
137
Tumor
0.2
666
Normal
0.2
722
Normal
0.2
268
Normal
0.2
312
Normal
0.2
635
Tumor
0.2
745
Tumor
0.2
574
Normal
0.2
386
Normal
0.2
1027
Tumor
0.2
362
Normal
0.2
142
Normal
0.2
391
Tumor
0.2
728
Normal
0.2
528
Normal
0.2
914
Normal
0.2
416
Normal
0.2
387
Tumor
0.2
866
Normal
0.1
188
Normal
0.1
328
Normal
0.1
713
Tumor
0.1
714
Normal
0.1
884
Normal
0.1
413
Tumor
0.1
367
Tumor
0.1
286
Normal
0.1
384
Normal
0.1
696
Normal
0.1
1044
Normal
0.1
778
Normal
0.1
228
Normal
0.1
1022
Normal
0.1
423
Tumor
0.1
451
Tumor
0.1
883
Tumor
0.1
434
Normal
0.1
868
Normal
0.1
874
Normal
0.1
816
Normal
0.1
257
Tumor
0.1
534
Normal
0.1
1032
Normal
0.1
227
Tumor
0.1
448
Normal
0.1
412
Normal
0.1
368
Normal
0.1
716
Normal
0.1
487
Tumor
0.1
363
Tumor
0.0
911
Tumor
0.0
665
Tumor
0.0
967
Tumor
0.0
922
Normal
0.0
671
Tumor
0.0
567
Tumor
0.0
472
Normal
0.0
715
Tumor
0.0
482
Normal
0.0
1016
Normal
0.0
284
Normal
0.0
195
Tumor
0.0
221
Tumor
0.0
313
Tumor
0.0
686
Normal
0.0
944
Normal
0.0
852
Normal
0.0
433
Tumor
0.0
873
Tumor
0.0
514
Normal
0.0
364
Normal
0.0
217
Tumor
0.0
877
Tumor
0.0
494
Normal
0.0
361
Tumor
0.0
484
Normal
0.0
123
Tumor
0.0
515
Tumor
0.0
187
Tumor
0.0
755
Tumor
0.0
982
Normal
0.0
721
Tumor
0.0
393
Tumor
-0.1
938
Normal
-0.1
617
Tumor
-0.1
964
Normal
-0.1
546
Normal
-0.1
477
Tumor
-0.1
558
Normal
-0.1
1041
Tumor
-0.1
924
Normal
-0.1
537
Tumor
-0.1
461
Tumor
-0.1
526
Normal
-0.1
976
Normal
-0.1
261
Tumor
-0.1
271
Tumor
-0.1
955
Tumor
-0.1
224
Normal
-0.1
192
Normal
-0.1
954
Normal
-0.1
327
Tumor
-0.1
474
Normal
-0.1
427
Tumor
-0.1
984
Normal
-0.1
1014
Normal
-0.1
1042
Normal
-0.1
926
Normal
-0.1
815
Tumor
-0.1
444
Normal
-0.1
1025
Tumor
-0.2
952
Normal
-0.2
956
Normal
-0.2
297
Tumor
-0.2
968
Normal
-0.2
1028
Normal
-0.2
518
Normal
-0.2
921
Tumor
-0.2
353
Tumor
-0.2
481
Tumor
-0.2
212
Normal
-0.2
918
Normal
-0.2
867
Tumor
-0.2
191
Tumor
-0.2
915
Tumor
-0.2
147
Tumor
-0.2
516
Normal
-0.2
141
Tumor
-0.3
483
Tumor
-0.3
966
Normal
-0.3
857
Tumor
-0.3
777
Tumor
-0.3
865
Tumor
-0.3
557
Tumor
-0.3
1031
Tumor
-0.3
978
Normal
-0.3
463
Tumor
-0.3
161
Tumor
-0.3
554
Normal
-0.3
538
Normal
-0.3
851
Tumor
-0.3
478
Normal
-0.3
435
Tumor
-0.4
937
Tumor
-0.4
383
Tumor
-0.4
981
Tumor
-0.4
351
Tumor
-0.4
277
Tumor
-0.5
958
Normal
-0.5
498
Normal
-0.5
415
Tumor
-0.5
524
Normal
-0.5
785
Tumor
-0.5
285
Tumor
-0.5
213
Tumor
-0.5
916
Normal
-0.5
411
Tumor
-0.5
724
Normal
-0.5
975
Tumor
-0.5
647
Tumor
-0.5
425
Tumor
-0.5
1015
Tumor
-0.5
471
Tumor
-0.5
492
Normal
-0.6
395
Tumor
-0.6
953
Tumor
-0.6
741
Tumor
-0.6
1021
Tumor
-0.6
881
Tumor
-0.6
823
Tumor
-0.6
863
Tumor
-0.6
493
Tumor
-0.6
573
Tumor
-0.6
983
Tumor
-0.6
737
Tumor
-0.6
913
Tumor
-0.6
447
Tumor
-0.7
965
Tumor
-0.7
431
Tumor
-0.7
663
Tumor
-0.7
131
Tumor
-0.7
467
Tumor
-0.7
685
Tumor
-0.7
533
Tumor
-0.8
553
Tumor
-0.8
536
Normal
-0.8
385
Tumor
-0.8
497
Tumor
-0.8
951
Tumor
-0.8
523
Tumor
-0.8
814
Normal
-0.8
535
Tumor
-0.9
525
Tumor
-0.9
923
Tumor
-0.9
455
Tumor
-0.9
861
Tumor
-0.9
473
Tumor
-0.9
813
Tumor
-1.0
527
Tumor
-1.0
343
Tumor
-1.0
977
Tumor
-1.0
963
Tumor
-1.0
817
Tumor
-1.0
661
Tumor
-1.0
125
Tumor
-1.1
311
Tumor
-1.1
375
Tumor
-1.1
943
Tumor
-1.1
491
Tumor
-1.2
355
Tumor
-1.2
697
Tumor
-1.2
545
Tumor
-1.3
1013
Tumor
-1.3
917
Tumor
-1.4
283
Tumor
-1.4
957
Tumor
-1.4
211
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.