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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RIPK4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RIPK4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
231
Samples
Sample
Description
TPM
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
868
Normal
1.4
742
Normal
1.3
727
Tumor
1.3
874
Normal
1.2
818
Normal
0.9
743
Tumor
0.9
537
Tumor
0.8
867
Tumor
0.7
724
Normal
0.7
231
Tumor
0.7
477
Tumor
0.6
571
Tumor
0.6
465
Tumor
0.6
553
Tumor
0.6
526
Normal
0.6
635
Tumor
0.6
527
Tumor
0.5
873
Tumor
0.5
227
Tumor
0.5
445
Tumor
0.5
473
Tumor
0.5
1014
Normal
0.5
984
Normal
0.5
866
Normal
0.5
258
Normal
0.5
1022
Normal
0.4
514
Normal
0.4
528
Normal
0.4
341
Tumor
0.4
328
Normal
0.4
497
Tumor
0.4
695
Tumor
0.4
268
Normal
0.4
641
Tumor
0.4
412
Normal
0.4
358
Normal
0.4
232
Normal
0.4
642
Normal
0.4
483
Tumor
0.4
422
Normal
0.4
816
Normal
0.4
354
Normal
0.4
967
Tumor
0.4
261
Tumor
0.4
978
Normal
0.3
431
Tumor
0.3
737
Tumor
0.3
862
Normal
0.3
286
Normal
0.3
214
Normal
0.3
262
Normal
0.3
432
Normal
0.3
145
Tumor
0.3
925
Tumor
0.3
858
Normal
0.3
746
Normal
0.3
342
Normal
0.3
982
Normal
0.3
865
Tumor
0.3
267
Tumor
0.3
196
Normal
0.3
376
Normal
0.3
824
Normal
0.3
574
Normal
0.3
534
Normal
0.3
685
Tumor
0.3
271
Tumor
0.3
1016
Normal
0.3
218
Normal
0.3
852
Normal
0.3
327
Tumor
0.3
352
Normal
0.3
344
Normal
0.3
443
Tumor
0.2
1015
Tumor
0.2
272
Normal
0.2
228
Normal
0.2
356
Normal
0.2
572
Normal
0.2
964
Normal
0.2
558
Normal
0.2
981
Tumor
0.2
517
Tumor
0.2
222
Normal
0.2
357
Tumor
0.2
617
Tumor
0.2
564
Normal
0.2
722
Normal
0.2
882
Normal
0.2
926
Normal
0.2
257
Tumor
0.2
518
Normal
0.2
138
Normal
0.2
224
Normal
0.2
466
Normal
0.2
285
Tumor
0.2
435
Tumor
0.2
686
Normal
0.2
468
Normal
0.2
696
Normal
0.2
415
Tumor
0.2
284
Normal
0.2
368
Normal
0.2
1026
Normal
0.2
915
Tumor
0.2
433
Tumor
0.1
786
Normal
0.1
482
Normal
0.1
628
Normal
0.1
618
Normal
0.1
636
Normal
0.1
616
Normal
0.1
416
Normal
0.1
1032
Normal
0.1
567
Tumor
0.1
363
Tumor
0.1
914
Normal
0.1
554
Normal
0.1
353
Tumor
0.1
362
Normal
0.1
132
Normal
0.1
955
Tumor
0.1
444
Normal
0.1
912
Normal
0.1
546
Normal
0.1
563
Tumor
0.1
923
Tumor
0.1
918
Normal
0.1
452
Normal
0.1
951
Tumor
0.1
958
Normal
0.1
364
Normal
0.1
568
Normal
0.1
956
Normal
0.1
976
Normal
0.1
436
Normal
0.1
756
Normal
0.1
513
Tumor
0.1
413
Tumor
0.0
952
Normal
0.0
921
Tumor
0.0
884
Normal
0.0
135
Tumor
0.0
864
Normal
0.0
557
Tumor
0.0
524
Normal
0.0
131
Tumor
0.0
493
Tumor
0.0
516
Normal
0.0
755
Tumor
0.0
212
Normal
0.0
922
Normal
0.0
714
Normal
0.0
713
Tumor
0.0
857
Tumor
0.0
474
Normal
0.0
464
Normal
0.0
538
Normal
0.0
1041
Tumor
0.0
515
Tumor
0.0
878
Normal
0.0
136
Normal
0.0
361
Tumor
0.0
446
Normal
0.0
627
Tumor
0.0
924
Normal
-0.1
471
Tumor
-0.1
944
Normal
-0.1
716
Normal
-0.1
146
Normal
-0.1
977
Tumor
-0.1
142
Normal
-0.1
615
Tumor
-0.1
1042
Normal
-0.1
1028
Normal
-0.1
965
Tumor
-0.1
1027
Tumor
-0.1
478
Normal
-0.1
494
Normal
-0.1
298
Normal
-0.1
778
Normal
-0.1
472
Normal
-0.1
462
Normal
-0.1
968
Normal
-0.1
954
Normal
-0.1
715
Tumor
-0.1
366
Normal
-0.1
137
Tumor
-0.1
1021
Tumor
-0.2
428
Normal
-0.2
484
Normal
-0.2
434
Normal
-0.2
741
Tumor
-0.2
411
Tumor
-0.2
192
Normal
-0.2
487
Tumor
-0.2
975
Tumor
-0.2
957
Tumor
-0.2
545
Tumor
-0.2
355
Tumor
-0.2
331
Tumor
-0.2
883
Tumor
-0.2
427
Tumor
-0.2
488
Normal
-0.2
384
Normal
-0.2
421
Tumor
-0.2
456
Normal
-0.2
745
Tumor
-0.2
451
Tumor
-0.2
1031
Tumor
-0.2
312
Normal
-0.2
966
Normal
-0.3
916
Normal
-0.3
863
Tumor
-0.3
937
Tumor
-0.3
191
Tumor
-0.3
223
Tumor
-0.3
851
Tumor
-0.3
917
Tumor
-0.3
573
Tumor
-0.3
423
Tumor
-0.3
195
Tumor
-0.3
278
Normal
-0.3
1025
Tumor
-0.3
785
Tumor
-0.3
813
Tumor
-0.3
498
Normal
-0.3
332
Normal
-0.3
351
Tumor
-0.3
938
Normal
-0.3
1013
Tumor
-0.3
481
Tumor
-0.3
141
Tumor
-0.4
425
Tumor
-0.4
311
Tumor
-0.4
365
Tumor
-0.4
861
Tumor
-0.4
461
Tumor
-0.4
911
Tumor
-0.4
983
Tumor
-0.4
491
Tumor
-0.4
455
Tumor
-0.4
963
Tumor
-0.4
728
Normal
-0.4
523
Tumor
-0.4
533
Tumor
-0.5
814
Normal
-0.5
217
Tumor
-0.5
953
Tumor
-0.5
314
Normal
-0.5
823
Tumor
-0.5
424
Normal
-0.5
913
Tumor
-0.6
414
Normal
-0.6
721
Tumor
-0.6
777
Tumor
-0.6
525
Tumor
-0.6
738
Normal
-0.6
467
Tumor
-0.6
283
Tumor
-0.6
343
Tumor
-0.7
877
Tumor
-0.7
221
Tumor
-0.7
383
Tumor
-0.7
881
Tumor
-0.7
297
Tumor
-0.7
815
Tumor
-0.7
426
Normal
-0.7
277
Tumor
-0.7
492
Normal
-0.8
213
Tumor
-0.8
943
Tumor
-0.9
463
Tumor
-0.9
367
Tumor
-0.9
817
Tumor
-1.1
313
Tumor
-1.1
211
Tumor
-1.4
375
Tumor
-1.4
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
723
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
