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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDX41 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
65.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
58.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
58.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
57.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
56.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
56.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
53.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
50.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
46.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
46.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
41.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
39.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
37.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
37.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
36.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
36.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
35.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
34.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
32.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
30.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDX41 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.8
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
88.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
71.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
70.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
69.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
66.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
57.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
53.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
52.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
51.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
49.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
47.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
46.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
45.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
44.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
43.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
42.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
41.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
41.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
39.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
37.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
35.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.2
1013
Tumor
1.1
965
Tumor
1.1
123
Tumor
1.1
351
Tumor
1.1
685
Tumor
1.0
411
Tumor
0.9
487
Tumor
0.9
665
Tumor
0.8
724
Normal
0.8
171
Tumor
0.8
785
Tumor
0.8
497
Tumor
0.8
865
Tumor
0.8
313
Tumor
0.7
473
Tumor
0.7
647
Tumor
0.7
977
Tumor
0.7
523
Tumor
0.7
537
Tumor
0.7
951
Tumor
0.7
635
Tumor
0.7
112
Tumor
0.6
231
Tumor
0.6
1027
Tumor
0.6
923
Tumor
0.6
913
Tumor
0.5
355
Tumor
0.5
615
Tumor
0.5
627
Tumor
0.5
1021
Tumor
0.5
387
Tumor
0.5
261
Tumor
0.5
383
Tumor
0.5
957
Tumor
0.5
571
Tumor
0.5
221
Tumor
0.5
277
Tumor
0.5
433
Tumor
0.5
431
Tumor
0.5
741
Tumor
0.5
557
Tumor
0.5
863
Tumor
0.4
983
Tumor
0.4
391
Tumor
0.4
861
Tumor
0.4
513
Tumor
0.4
285
Tumor
0.4
777
Tumor
0.4
857
Tumor
0.4
367
Tumor
0.4
161
Tumor
0.4
925
Tumor
0.4
883
Tumor
0.4
443
Tumor
0.4
363
Tumor
0.4
937
Tumor
0.4
881
Tumor
0.4
921
Tumor
0.4
213
Tumor
0.4
331
Tumor
0.3
813
Tumor
0.3
1031
Tumor
0.3
341
Tumor
0.3
491
Tumor
0.3
814
Normal
0.3
493
Tumor
0.3
695
Tumor
0.3
357
Tumor
0.3
737
Tumor
0.3
463
Tumor
0.3
477
Tumor
0.3
553
Tumor
0.3
131
Tumor
0.3
481
Tumor
0.3
567
Tumor
0.3
817
Tumor
0.3
515
Tumor
0.3
671
Tumor
0.3
227
Tumor
0.3
423
Tumor
0.3
697
Tumor
0.3
641
Tumor
0.2
217
Tumor
0.2
1045
Tumor
0.2
483
Tumor
0.2
385
Tumor
0.2
721
Tumor
0.2
445
Tumor
0.2
877
Tumor
0.2
873
Tumor
0.2
395
Tumor
0.2
467
Tumor
0.2
211
Tumor
0.2
257
Tumor
0.2
533
Tumor
0.2
471
Tumor
0.2
851
Tumor
0.2
283
Tumor
0.2
127
Tumor
0.2
823
Tumor
0.2
815
Tumor
0.1
661
Tumor
0.1
1041
Tumor
0.1
713
Tumor
0.1
465
Tumor
0.1
415
Tumor
0.1
535
Tumor
0.1
447
Tumor
0.1
1025
Tumor
0.1
745
Tumor
0.1
185
Tumor
0.1
141
Tumor
0.1
953
Tumor
0.1
451
Tumor
0.1
867
Tumor
0.1
361
Tumor
0.1
975
Tumor
0.1
911
Tumor
0.1
545
Tumor
0.1
113
Tumor
0.1
353
Tumor
0.0
663
Tumor
0.0
365
Tumor
0.0
267
Tumor
0.0
573
Tumor
0.0
125
Tumor
0.0
455
Tumor
0.0
755
Tumor
0.0
425
Tumor
0.0
375
Tumor
0.0
297
Tumor
0.0
727
Tumor
0.0
271
Tumor
0.0
187
Tumor
0.0
525
Tumor
0.0
563
Tumor
0.0
967
Tumor
0.0
147
Tumor
0.0
915
Tumor
0.0
413
Tumor
0.0
963
Tumor
0.0
435
Tumor
0.0
715
Tumor
0.0
517
Tumor
-0.1
461
Tumor
-0.1
223
Tumor
-0.1
135
Tumor
-0.1
343
Tumor
-0.1
145
Tumor
-0.1
964
Normal
-0.1
536
Normal
-0.1
393
Tumor
-0.1
1042
Normal
-0.1
617
Tumor
-0.1
427
Tumor
-0.1
498
Normal
-0.1
1015
Tumor
-0.1
1046
Normal
-0.1
666
Normal
-0.1
912
Normal
-0.1
524
Normal
-0.1
358
Normal
-0.1
137
Tumor
-0.1
1032
Normal
-0.1
723
Tumor
-0.2
311
Tumor
-0.2
884
Normal
-0.2
981
Tumor
-0.2
858
Normal
-0.2
444
Normal
-0.2
534
Normal
-0.2
955
Tumor
-0.2
492
Normal
-0.2
554
Normal
-0.2
432
Normal
-0.2
628
Normal
-0.2
332
Normal
-0.2
818
Normal
-0.2
142
Normal
-0.2
824
Normal
-0.2
482
Normal
-0.2
488
Normal
-0.2
526
Normal
-0.2
384
Normal
-0.2
191
Tumor
-0.2
352
Normal
-0.2
943
Tumor
-0.2
327
Tumor
-0.2
514
Normal
-0.2
484
Normal
-0.2
516
Normal
-0.2
188
Normal
-0.2
494
Normal
-0.2
686
Normal
-0.2
1043
Tumor
-0.2
722
Normal
-0.2
148
Normal
-0.2
616
Normal
-0.2
195
Tumor
-0.2
478
Normal
-0.2
944
Normal
-0.2
528
Normal
-0.2
328
Normal
-0.2
636
Normal
-0.2
386
Normal
-0.2
1014
Normal
-0.2
966
Normal
-0.2
1028
Normal
-0.2
984
Normal
-0.2
976
Normal
-0.2
958
Normal
-0.2
472
Normal
-0.2
978
Normal
-0.2
926
Normal
-0.2
882
Normal
-0.2
344
Normal
-0.2
728
Normal
-0.2
938
Normal
-0.2
738
Normal
-0.2
1026
Normal
-0.2
642
Normal
-0.3
924
Normal
-0.3
126
Normal
-0.3
186
Normal
-0.3
162
Normal
-0.3
558
Normal
-0.3
172
Normal
-0.3
1044
Normal
-0.3
448
Normal
-0.3
648
Normal
-0.3
954
Normal
-0.3
538
Normal
-0.3
124
Normal
-0.3
342
Normal
-0.3
618
Normal
-0.3
412
Normal
-0.3
364
Normal
-0.3
356
Normal
-0.3
714
Normal
-0.3
742
Normal
-0.3
416
Normal
-0.3
866
Normal
-0.3
786
Normal
-0.3
664
Normal
-0.3
916
Normal
-0.3
922
Normal
-0.3
852
Normal
-0.3
314
Normal
-0.3
956
Normal
-0.3
114
Normal
-0.3
192
Normal
-0.3
128
Normal
-0.3
756
Normal
-0.3
546
Normal
-0.3
278
Normal
-0.3
968
Normal
-0.3
456
Normal
-0.3
368
Normal
-0.3
228
Normal
-0.3
392
Normal
-0.3
662
Normal
-0.3
312
Normal
-0.3
564
Normal
-0.3
388
Normal
-0.3
354
Normal
-0.3
743
Tumor
-0.3
268
Normal
-0.3
452
Normal
-0.3
396
Normal
-0.3
298
Normal
-0.3
464
Normal
-0.3
698
Normal
-0.3
864
Normal
-0.3
878
Normal
-0.3
672
Normal
-0.3
474
Normal
-0.3
1022
Normal
-0.3
744
Normal
-0.3
111
Normal
-0.3
224
Normal
-0.3
366
Normal
-0.3
434
Normal
-0.3
258
Normal
-0.3
914
Normal
-0.3
778
Normal
-0.3
862
Normal
-0.3
868
Normal
-0.3
518
Normal
-0.3
696
Normal
-0.3
462
Normal
-0.3
746
Normal
-0.3
446
Normal
-0.4
874
Normal
-0.4
376
Normal
-0.4
421
Tumor
-0.4
212
Normal
-0.4
232
Normal
-0.4
917
Tumor
-0.4
918
Normal
-0.4
272
Normal
-0.4
574
Normal
-0.4
1016
Normal
-0.4
394
Normal
-0.4
468
Normal
-0.4
572
Normal
-0.4
218
Normal
-0.4
568
Normal
-0.4
146
Normal
-0.4
136
Normal
-0.4
222
Normal
-0.4
362
Normal
-0.4
982
Normal
-0.4
952
Normal
-0.4
284
Normal
-0.4
286
Normal
-0.4
816
Normal
-0.4
436
Normal
-0.4
466
Normal
-0.4
422
Normal
-0.4
716
Normal
-0.4
262
Normal
-0.5
214
Normal
-0.5
426
Normal
-0.5
132
Normal
-0.5
196
Normal
-0.5
138
Normal
-0.5
414
Normal
-0.5
428
Normal
-0.5
424
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
