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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPC6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPC6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.0
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.5
863
Tumor
1.2
743
Tumor
1.1
297
Tumor
1.1
444
Normal
1.0
135
Tumor
1.0
545
Tumor
1.0
478
Normal
1.0
311
Tumor
0.9
1025
Tumor
0.9
192
Normal
0.9
975
Tumor
0.8
223
Tumor
0.8
271
Tumor
0.8
498
Normal
0.8
445
Tumor
0.8
481
Tumor
0.8
312
Normal
0.8
386
Normal
0.8
563
Tumor
0.8
415
Tumor
0.8
277
Tumor
0.8
923
Tumor
0.8
571
Tumor
0.7
877
Tumor
0.7
126
Normal
0.7
363
Tumor
0.7
737
Tumor
0.7
963
Tumor
0.7
455
Tumor
0.7
814
Normal
0.6
467
Tumor
0.6
536
Normal
0.6
881
Tumor
0.6
874
Normal
0.6
497
Tumor
0.6
268
Normal
0.6
818
Normal
0.6
524
Normal
0.6
491
Tumor
0.6
146
Normal
0.6
857
Tumor
0.6
868
Normal
0.6
185
Tumor
0.6
943
Tumor
0.6
813
Tumor
0.5
817
Tumor
0.5
448
Normal
0.5
188
Normal
0.5
538
Normal
0.5
447
Tumor
0.5
492
Normal
0.5
483
Tumor
0.5
461
Tumor
0.5
284
Normal
0.5
1042
Normal
0.5
916
Normal
0.5
355
Tumor
0.5
434
Normal
0.5
187
Tumor
0.5
785
Tumor
0.5
958
Normal
0.5
744
Normal
0.5
471
Tumor
0.4
823
Tumor
0.4
366
Normal
0.4
473
Tumor
0.4
375
Tumor
0.4
331
Tumor
0.4
924
Normal
0.4
884
Normal
0.4
362
Normal
0.4
917
Tumor
0.4
421
Tumor
0.4
212
Normal
0.4
723
Tumor
0.4
558
Normal
0.4
976
Normal
0.4
224
Normal
0.4
671
Tumor
0.4
474
Normal
0.3
852
Normal
0.3
918
Normal
0.3
713
Tumor
0.3
354
Normal
0.3
394
Normal
0.3
697
Tumor
0.3
982
Normal
0.3
416
Normal
0.3
456
Normal
0.3
384
Normal
0.3
413
Tumor
0.3
493
Tumor
0.3
214
Normal
0.3
574
Normal
0.3
635
Tumor
0.3
364
Normal
0.3
425
Tumor
0.3
468
Normal
0.3
663
Tumor
0.3
956
Normal
0.3
666
Normal
0.3
343
Tumor
0.3
392
Normal
0.3
124
Normal
0.3
922
Normal
0.3
662
Normal
0.2
388
Normal
0.2
716
Normal
0.2
1026
Normal
0.2
721
Tumor
0.2
535
Tumor
0.2
672
Normal
0.2
433
Tumor
0.2
466
Normal
0.2
195
Tumor
0.2
412
Normal
0.2
738
Normal
0.2
218
Normal
0.2
628
Normal
0.2
352
Normal
0.2
617
Tumor
0.2
546
Normal
0.2
516
Normal
0.2
514
Normal
0.2
528
Normal
0.2
967
Tumor
0.2
161
Tumor
0.1
525
Tumor
0.1
228
Normal
0.1
1044
Normal
0.1
278
Normal
0.1
145
Tumor
0.1
1028
Normal
0.1
262
Normal
0.1
952
Normal
0.1
777
Tumor
0.1
954
Normal
0.1
964
Normal
0.1
978
Normal
0.1
742
Normal
0.1
882
Normal
0.1
968
Normal
0.1
756
Normal
0.1
878
Normal
0.1
1014
Normal
0.1
344
Normal
0.1
472
Normal
0.1
272
Normal
0.1
376
Normal
0.1
111
Normal
0.0
487
Tumor
0.0
572
Normal
0.0
258
Normal
0.0
267
Tumor
0.0
642
Normal
0.0
232
Normal
0.0
342
Normal
0.0
368
Normal
0.0
221
Tumor
0.0
432
Normal
0.0
984
Normal
0.0
396
Normal
0.0
136
Normal
N/A
746
Normal
0.0
686
Normal
0.0
567
Tumor
0.0
114
Normal
0.0
873
Tumor
0.0
515
Tumor
0.0
865
Tumor
0.0
446
Normal
0.0
554
Normal
0.0
424
Normal
0.0
142
Normal
0.0
641
Tumor
0.0
332
Normal
0.0
722
Normal
0.0
138
Normal
0.0
314
Normal
0.0
422
Normal
0.0
211
Tumor
-0.1
286
Normal
-0.1
816
Normal
-0.1
365
Tumor
-0.1
298
Normal
-0.1
141
Tumor
-0.1
523
Tumor
-0.1
356
Normal
-0.1
537
Tumor
-0.1
414
Normal
-0.1
527
Tumor
-0.1
938
Normal
-0.1
1032
Normal
-0.1
227
Tumor
-0.1
494
Normal
-0.1
867
Tumor
-0.1
484
Normal
-0.1
1045
Tumor
-0.1
517
Tumor
-0.1
213
Tumor
-0.1
217
Tumor
-0.1
1022
Normal
-0.1
148
Normal
-0.1
1046
Normal
-0.1
786
Normal
-0.1
944
Normal
-0.1
383
Tumor
-0.1
426
Normal
-0.2
1016
Normal
-0.2
452
Normal
-0.2
778
Normal
-0.2
196
Normal
-0.2
222
Normal
-0.2
636
Normal
-0.2
913
Tumor
-0.2
618
Normal
-0.2
564
Normal
-0.2
285
Tumor
-0.2
464
Normal
-0.2
966
Normal
-0.2
328
Normal
-0.2
191
Tumor
-0.2
728
Normal
-0.2
387
Tumor
-0.2
698
Normal
-0.2
462
Normal
-0.2
866
Normal
-0.2
573
Tumor
-0.2
912
Normal
-0.2
428
Normal
-0.2
696
Normal
-0.3
921
Tumor
-0.3
664
Normal
-0.3
488
Normal
-0.3
534
Normal
-0.3
955
Tumor
-0.3
627
Tumor
-0.3
714
Normal
-0.3
553
Tumor
-0.3
358
Normal
-0.3
132
Normal
-0.3
745
Tumor
-0.3
463
Tumor
-0.3
172
Normal
-0.3
125
Tumor
-0.3
186
Normal
-0.3
616
Normal
-0.3
482
Normal
-0.3
518
Normal
-0.3
353
Tumor
-0.3
755
Tumor
-0.3
361
Tumor
-0.3
526
Normal
-0.3
137
Tumor
-0.3
393
Tumor
-0.3
1015
Tumor
-0.3
313
Tumor
-0.4
162
Normal
-0.4
411
Tumor
-0.4
568
Normal
-0.4
648
Normal
-0.4
862
Normal
-0.4
914
Normal
-0.4
727
Tumor
-0.4
824
Normal
-0.4
341
Tumor
-0.4
357
Tumor
-0.4
533
Tumor
-0.4
926
Normal
-0.4
864
Normal
-0.4
1043
Tumor
-0.4
385
Tumor
-0.4
695
Tumor
-0.4
436
Normal
-0.4
858
Normal
-0.4
423
Tumor
-0.4
283
Tumor
-0.4
128
Normal
-0.5
443
Tumor
-0.5
257
Tumor
-0.5
883
Tumor
-0.5
427
Tumor
-0.5
1013
Tumor
-0.5
1021
Tumor
-0.5
113
Tumor
-0.6
1031
Tumor
-0.6
951
Tumor
-0.6
615
Tumor
-0.6
981
Tumor
-0.6
983
Tumor
-0.6
477
Tumor
-0.6
327
Tumor
-0.7
977
Tumor
-0.7
367
Tumor
-0.7
261
Tumor
-0.7
647
Tumor
-0.8
112
Tumor
-0.9
513
Tumor
-0.9
435
Tumor
-0.9
965
Tumor
-0.9
915
Tumor
-1.0
557
Tumor
-1.0
685
Tumor
-1.0
147
Tumor
-1.0
957
Tumor
-1.1
127
Tumor
-1.1
431
Tumor
-1.1
391
Tumor
-1.1
925
Tumor
-1.1
715
Tumor
-1.1
395
Tumor
-1.1
665
Tumor
-1.2
231
Tumor
-1.2
937
Tumor
-1.2
351
Tumor
-1.2
661
Tumor
-1.2
953
Tumor
-1.2
861
Tumor
-1.2
1027
Tumor
-1.3
451
Tumor
-1.3
815
Tumor
-1.4
1041
Tumor
-1.4
851
Tumor
-1.4
741
Tumor
-1.5
465
Tumor
-1.5
171
Tumor
-1.5
724
Normal
-1.6
911
Tumor
-1.9
123
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
