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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AFMID is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
213.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
194.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
193.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
187.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
178.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
177.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
173.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
168.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
164.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
162.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
158.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
150.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
147.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
140.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
131.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
130.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
129.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
127.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
125.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
119.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
119.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
118.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
117.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
117.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
115.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
114.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
113.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
112.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
111.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
107.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
107.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
106.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
106.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
106.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
105.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
105.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
104.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
104.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
104.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
104.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
103.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
103.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
102.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
102.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
101.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
100.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
100.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
99.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
99.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
99.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
98.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
98.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
97.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
97.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
97.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
97.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
96.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
96.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
95.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
93.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
88.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
87.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
86.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
86.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
86.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
86.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
86.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
86.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
85.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
85.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
85.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
85.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
84.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
84.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
84.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
82.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
82.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
82.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
82.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
82.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
82.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
82.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
80.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
80.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
80.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
80.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
80.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
80.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
79.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
79.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
78.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
78.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
78.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
77.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
77.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
77.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
77.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
77.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
77.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
77.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
76.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
76.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
76.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
75.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
75.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
75.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
75.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
74.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
74.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
74.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
74.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
74.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
73.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
73.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
73.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
72.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
72.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
71.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
70.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
70.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
70.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
70.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
69.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
69.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
69.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
69.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
69.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
68.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
67.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
67.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
67.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
67.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
67.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
67.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
66.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
66.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
66.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
66.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
66.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
66.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
65.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
65.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
65.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
65.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
65.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
65.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
65.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
64.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
64.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
64.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
64.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
64.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
64.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
64.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
64.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
64.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
63.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
63.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
63.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
63.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
62.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
62.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
62.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
62.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
62.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
62.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
62.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
62.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
61.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
61.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
61.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
61.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
61.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
60.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
60.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
60.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
60.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
60.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
60.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
59.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
59.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
59.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
58.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
58.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
58.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
58.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
58.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
57.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
57.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
57.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
57.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
57.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
56.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
56.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
56.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
55.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
55.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
55.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
54.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
54.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
54.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
54.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
53.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
52.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
52.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
52.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
52.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
52.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
51.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
51.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
51.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
51.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
51.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
50.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
50.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
50.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
50.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
49.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
49.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
49.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
48.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
48.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
48.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
47.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
47.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
46.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
46.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
46.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
45.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
45.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
45.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
45.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
44.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
44.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
43.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
43.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
42.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
42.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
42.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
41.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
41.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
41.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
40.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
40.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
38.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
38.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
36.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
35.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
35.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
35.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
35.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
35.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
33.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
32.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
32.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AFMID is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
59.7
Number of samples
231
Samples
Sample
Description
TPM
DO45105
0 years, male, NA, stage:1, alive, 1680 days
226.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
221.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
201.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
198.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
168.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
164.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
162.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
161.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
153.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
150.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
143.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
133.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
127.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
125.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
125.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
122.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
120.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
120.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
119.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
116.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
112.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
110.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
107.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
106.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
104.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
103.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
103.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
100.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
99.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
98.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
98.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
96.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
94.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
93.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
92.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
92.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
90.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
90.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
87.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
87.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
85.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
84.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
83.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
83.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
82.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
82.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
81.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
80.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
80.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
80.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
78.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
76.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
74.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
73.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
72.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
72.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
72.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
72.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
71.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
71.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
70.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
70.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
69.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
68.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
68.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
67.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
67.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
66.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
66.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
65.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
65.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
65.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
65.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
64.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
64.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
63.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
63.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
63.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
62.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
61.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
60.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
60.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
59.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
59.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
59.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
59.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
58.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
58.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
58.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
57.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
57.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
57.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
57.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
56.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
56.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
56.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
55.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
55.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
54.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
54.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
54.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
53.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
53.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
53.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
52.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
52.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
51.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
51.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
51.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
50.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
50.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
50.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
50.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
48.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
48.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
47.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
47.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
46.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
45.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
45.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
44.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
43.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
43.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
42.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
41.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
40.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
40.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
39.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
38.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
746
Normal
1.0
436
Normal
1.0
862
Normal
1.0
924
Normal
0.9
222
Normal
0.9
944
Normal
0.9
698
Normal
0.9
926
Normal
0.9
1026
Normal
0.8
546
Normal
0.8
484
Normal
0.8
915
Tumor
0.8
196
Normal
0.8
824
Normal
0.8
1022
Normal
0.8
955
Tumor
0.8
738
Normal
0.8
918
Normal
0.8
114
Normal
0.8
342
Normal
0.8
472
Normal
0.8
616
Normal
0.8
858
Normal
0.7
952
Normal
0.7
852
Normal
0.7
1032
Normal
0.7
742
Normal
0.7
452
Normal
0.7
186
Normal
0.7
723
Tumor
0.7
258
Normal
0.7
1046
Normal
0.7
664
Normal
0.7
966
Normal
0.7
516
Normal
0.7
356
Normal
0.7
866
Normal
0.7
695
Tumor
0.7
132
Normal
0.7
716
Normal
0.7
1042
Normal
0.7
964
Normal
0.7
314
Normal
0.7
534
Normal
0.7
464
Normal
0.7
218
Normal
0.6
956
Normal
0.6
864
Normal
0.6
618
Normal
0.6
388
Normal
0.6
728
Normal
0.6
482
Normal
0.6
981
Tumor
0.6
642
Normal
0.6
878
Normal
0.6
366
Normal
0.6
474
Normal
0.6
432
Normal
0.6
435
Tumor
0.6
433
Tumor
0.6
376
Normal
0.6
696
Normal
0.6
128
Normal
0.6
574
Normal
0.6
526
Normal
0.6
162
Normal
0.6
528
Normal
0.6
364
Normal
0.5
426
Normal
0.5
272
Normal
0.5
514
Normal
0.5
628
Normal
0.5
424
Normal
0.5
922
Normal
0.5
298
Normal
0.5
914
Normal
0.5
416
Normal
0.5
138
Normal
0.5
982
Normal
0.5
662
Normal
0.5
392
Normal
0.5
358
Normal
0.5
722
Normal
0.5
278
Normal
0.5
394
Normal
0.5
554
Normal
0.5
874
Normal
0.5
976
Normal
0.5
916
Normal
0.5
462
Normal
0.4
778
Normal
0.4
142
Normal
0.4
572
Normal
0.4
414
Normal
0.4
446
Normal
0.4
212
Normal
0.4
978
Normal
0.4
332
Normal
0.4
477
Tumor
0.4
686
Normal
0.4
214
Normal
0.4
884
Normal
0.4
428
Normal
0.4
362
Normal
0.4
954
Normal
0.4
232
Normal
0.4
558
Normal
0.4
488
Normal
0.3
481
Tumor
0.3
1044
Normal
0.3
195
Tumor
0.3
284
Normal
0.3
328
Normal
0.3
363
Tumor
0.3
468
Normal
0.3
518
Normal
0.3
648
Normal
0.3
938
Normal
0.3
744
Normal
0.3
466
Normal
0.3
912
Normal
0.3
568
Normal
0.3
715
Tumor
0.3
1027
Tumor
0.3
1028
Normal
0.3
456
Normal
0.2
741
Tumor
0.2
564
Normal
0.2
984
Normal
0.2
172
Normal
0.2
721
Tumor
0.2
868
Normal
0.2
368
Normal
0.2
882
Normal
0.2
1041
Tumor
0.2
434
Normal
0.2
1014
Normal
0.2
714
Normal
0.2
224
Normal
0.2
685
Tumor
0.2
958
Normal
0.2
727
Tumor
0.2
513
Tumor
0.1
816
Normal
0.1
786
Normal
0.1
422
Normal
0.1
136
Normal
0.1
354
Normal
0.1
533
Tumor
0.1
124
Normal
0.1
666
Normal
0.1
393
Tumor
0.1
111
Normal
0.1
672
Normal
0.1
492
Normal
0.1
353
Tumor
0.1
126
Normal
0.1
953
Tumor
0.1
361
Tumor
0.0
412
Normal
0.0
636
Normal
0.0
327
Tumor
0.0
146
Normal
0.0
818
Normal
0.0
148
Normal
0.0
384
Normal
0.0
192
Normal
0.0
423
Tumor
0.0
448
Normal
0.0
867
Tumor
0.0
444
Normal
0.0
188
Normal
0.0
217
Tumor
0.0
443
Tumor
-0.1
257
Tumor
-0.1
911
Tumor
-0.1
1025
Tumor
-0.1
396
Normal
-0.1
344
Normal
-0.1
386
Normal
-0.1
262
Normal
-0.1
635
Tumor
-0.1
352
Normal
-0.1
494
Normal
-0.1
538
Normal
-0.1
268
Normal
-0.1
478
Normal
-0.1
312
Normal
-0.2
451
Tumor
-0.2
641
Tumor
-0.2
557
Tumor
-0.2
471
Tumor
-0.2
1016
Normal
-0.2
524
Normal
-0.2
171
Tumor
-0.2
357
Tumor
-0.2
221
Tumor
-0.2
365
Tumor
-0.3
431
Tumor
-0.3
627
Tumor
-0.3
137
Tumor
-0.3
147
Tumor
-0.3
415
Tumor
-0.3
113
Tumor
-0.4
571
Tumor
-0.4
713
Tumor
-0.4
536
Normal
-0.4
267
Tumor
-0.4
617
Tumor
-0.4
525
Tumor
-0.4
873
Tumor
-0.4
745
Tumor
-0.4
413
Tumor
-0.5
498
Normal
-0.5
112
Tumor
-0.5
1031
Tumor
-0.5
861
Tumor
-0.5
341
Tumor
-0.5
271
Tumor
-0.6
145
Tumor
-0.6
563
Tumor
-0.6
286
Normal
-0.6
823
Tumor
-0.6
857
Tumor
-0.6
963
Tumor
-0.6
493
Tumor
-0.6
756
Normal
-0.6
445
Tumor
-0.6
515
Tumor
-0.6
127
Tumor
-0.6
277
Tumor
-0.6
228
Normal
-0.6
191
Tumor
-0.6
421
Tumor
-0.7
553
Tumor
-0.7
975
Tumor
-0.7
461
Tumor
-0.7
737
Tumor
-0.7
968
Normal
-0.7
527
Tumor
-0.7
1045
Tumor
-0.7
467
Tumor
-0.7
463
Tumor
-0.7
465
Tumor
-0.7
814
Normal
-0.8
671
Tumor
-0.8
921
Tumor
-0.8
261
Tumor
-0.8
355
Tumor
-0.8
957
Tumor
-0.8
491
Tumor
-0.8
213
Tumor
-0.9
923
Tumor
-0.9
185
Tumor
-0.9
483
Tumor
-0.9
487
Tumor
-0.9
1021
Tumor
-0.9
227
Tumor
-0.9
161
Tumor
-0.9
573
Tumor
-0.9
817
Tumor
-0.9
615
Tumor
-0.9
387
Tumor
-0.9
913
Tumor
-0.9
425
Tumor
-0.9
297
Tumor
-0.9
187
Tumor
-0.9
883
Tumor
-0.9
473
Tumor
-1.0
141
Tumor
-1.0
881
Tumor
-1.0
943
Tumor
-1.0
977
Tumor
-1.0
545
Tumor
-1.0
231
Tumor
-1.0
567
Tumor
-1.1
427
Tumor
-1.1
411
Tumor
-1.1
1043
Tumor
-1.1
223
Tumor
-1.1
951
Tumor
-1.1
395
Tumor
-1.1
863
Tumor
-1.1
917
Tumor
-1.1
517
Tumor
-1.1
785
Tumor
-1.1
877
Tumor
-1.1
455
Tumor
-1.2
937
Tumor
-1.2
925
Tumor
-1.2
447
Tumor
-1.2
815
Tumor
-1.2
665
Tumor
-1.2
865
Tumor
-1.2
697
Tumor
-1.2
965
Tumor
-1.2
383
Tumor
-1.3
743
Tumor
-1.3
663
Tumor
-1.3
331
Tumor
-1.3
724
Normal
-1.3
813
Tumor
-1.3
755
Tumor
-1.3
777
Tumor
-1.3
523
Tumor
-1.3
647
Tumor
-1.3
391
Tumor
-1.3
1015
Tumor
-1.3
125
Tumor
-1.3
135
Tumor
-1.3
967
Tumor
-1.3
351
Tumor
-1.3
283
Tumor
-1.4
497
Tumor
-1.4
537
Tumor
-1.4
311
Tumor
-1.4
123
Tumor
-1.4
313
Tumor
-1.5
1013
Tumor
-1.6
851
Tumor
-1.6
983
Tumor
-1.6
343
Tumor
-1.6
211
Tumor
-1.6
367
Tumor
-1.7
131
Tumor
-1.7
375
Tumor
-1.7
535
Tumor
-1.8
285
Tumor
-1.9
661
Tumor
-1.9
385
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
