MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA Brain:72.0 nTPM
GTEx:17.6 nTPM
FANTOM5:119.2 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:3.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 72.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
1830 Male, age 51, unknown 72.5
1833 Male, age 53, unknown 70.1
1870 Female, age 42, unknown 64.2
2019 Male, age 18, unknown 63.9
2411 Female, age 72, unknown 59.0
2828 Female, age 72, unknown 58.1
2586 Male, age 75, left hemisphere 55.3
2666 Male, age 74, left hemisphere 53.2
1827 Male, age 72, unknown 46.5
2219 Male, age 76, both hemispheres 36.0
Dorsal raphe nucleus
nTPM: 54.4
2750 Male, age 76, both hemispheres 65.1
2016 Female, age 72, unknown 59.0
1828 Male, age 53, unknown 57.8
2298 Female, age 72, unknown 46.3
2047 Male, age 72, unknown 43.9
Inferior colliculus
nTPM: 45.3
1890 Male, age 53, unknown 49.7
1848 Female, age 42, unknown 48.8
2849 Male, age 72, unknown 43.8
2097 Female, age 72, unknown 38.7
Median raphe nucleus
nTPM: 51.5
2220 Male, age 76, midline 51.5
Periaquaductal grey, anterior
nTPM: 54.6
1947 Male, age 18, unknown 59.8
2502 Female, age 75, unknown 54.8
1795 Male, age 51, unknown 49.3
Periaquaductal grey, dorsal
nTPM: 52.0
2850 Male, age 76, both hemispheres 76.9
1831 Male, age 72, unknown 49.3
2464 Female, age 72, unknown 48.4
1840 Male, age 53, unknown 33.3
Periaquaductal grey, lateral
nTPM: 62.3
2140 Male, age 76, both hemispheres 84.1
2272 Male, age 74, both hemispheres 52.2
2053 Male, age 18, unknown 50.6
Pretectal area
nTPM: 48.8
2316 Male, age 76, right hemisphere 66.8
2407 Male, age 75, both hemispheres 66.3
2667 Female, age 75, unknown 52.4
2273 Male, age 74, both hemispheres 52.0
1815 Male, age 53, unknown 51.4
2825 Male, age 18, unknown 49.1
2224 Female, age 72, unknown 47.5
2007 Male, age 72, unknown 43.2
1817 Female, age 42, unknown 41.6
1944 Female, age 72, unknown 36.0
1816 Male, age 51, unknown 30.5
Red nucleus
nTPM: 72.0
1904 Male, age 53, unknown 87.9
1865 Male, age 51, unknown 85.5
2769 Male, age 72, unknown 83.5
2227 Male, age 72, unknown 78.5
2503 Female, age 72, unknown 74.3
1954 Female, age 42, unknown 71.4
2785 Male, age 18, unknown 70.8
1821 Female, age 72, unknown 68.0
2823 Male, age 76, right hemisphere 66.2
2588 Male, age 74, left hemisphere 64.7
2725 Female, age 75, unknown 58.3
2584 Male, age 75, left hemisphere 54.6
Substantia nigra
nTPM: 57.6
2590 Female, age 75, unknown 71.2
2699 Male, age 18, unknown 69.2
2583 Male, age 75, right hemisphere 64.3
1851 Male, age 51, unknown 60.1
1916 Female, age 42, unknown 55.0
2665 Male, age 74, both hemispheres 54.0
2241 Male, age 72, unknown 52.8
1941 Male, age 53, unknown 52.3
2409 Female, age 72, unknown 51.5
1889 Female, age 72, unknown 45.6
Superior colliculus
nTPM: 52.3
1995 Male, age 72, unknown 73.3
1913 Female, age 42, unknown 71.7
1839 Male, age 51, unknown 55.7
2587 Male, age 74, left hemisphere 53.8
2664 Male, age 75, both hemispheres 49.7
1895 Male, age 76, right hemisphere 48.7
2668 Female, age 75, unknown 45.4
1796 Male, age 53, unknown 42.9
2087 Female, age 72, unknown 41.6
2261 Male, age 18, unknown 40.0
Ventral tegmental area
nTPM: 57.1
2223 Female, age 72, unknown 70.2
2410 Female, age 72, unknown 58.4
2021 Male, age 53, unknown 56.6
1942 Male, age 51, unknown 55.6
2218 Male, age 76, both hemispheres 51.4
1915 Female, age 42, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 42.2
Min nTPM: 6.8
Std nTPM: 6.6
Median nTPM: 16.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 42.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 37.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 33.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.1
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 30.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 30.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 28.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 27.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 119.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.2
FF:10158-103A5 76 years, female 119.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.8
Samples: 4

Max nTPM: 21.2
Min nTPM: 8.5
Sample A Female 12.5
Sample B Female 8.5
Sample C Male 13.1
Sample D Male 21.2
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 30.8
Min nTPM: 8.1
Sample A Female 30.8
Sample B Female 9.6
Sample C Male 8.1
Sample D Male 8.3
Periaqueductal gray
nTPM: 8.8
Samples: 3

Max nTPM: 10.6
Min nTPM: 7.7
Sample B Female 7.7
Sample C Male 8.2
Sample D Male 10.6
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 13.0
Min nTPM: 8.3
Sample A Female 9.6
Sample B Female 8.3
Sample C Male 10.5
Sample D Male 13.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.8
Sample A Male 3.6
Sample B Male 2.8
Sample C Female 4.4
Sample D Female 4.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69816918 Antisense, RP_050510_02_B11, Mouse strain C57BL/6J (56 days, male) 0.3
73997152 Antisense, RP_051214_03_F11, Mouse strain C57BL/6J (56 days, male) 0.1

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