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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NGRN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
143.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
121.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
119.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
118.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
118.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
114.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
112.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
112.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
111.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
104.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
103.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
102.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
102.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
101.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
100.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
98.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
96.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
95.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
95.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
94.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
91.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
91.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
90.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
89.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
85.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
85.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
84.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
84.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
82.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
82.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
82.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
81.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
81.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
80.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
78.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
77.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
77.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
77.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
76.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
72.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
72.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
71.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
71.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
71.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
70.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
70.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
68.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
68.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
67.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
67.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
66.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
66.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
66.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
66.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
65.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
65.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
65.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
65.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
64.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
64.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
64.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
64.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
64.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
63.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
63.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
63.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
62.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
62.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
61.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
61.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
60.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
60.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
60.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
60.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
60.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
59.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
58.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
58.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
58.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
58.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
58.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
57.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
57.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
57.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
56.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
56.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
56.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
55.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
55.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
55.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
55.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
55.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
55.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
55.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
54.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
54.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
54.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
54.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
53.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
53.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
53.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
53.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
53.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
52.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
52.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
52.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
52.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
52.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
52.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
51.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
51.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
51.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
51.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
51.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
50.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
50.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
50.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
49.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
49.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
49.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
49.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
49.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
49.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
48.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
48.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
48.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
47.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
47.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
46.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
46.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
45.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
45.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
45.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
44.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
44.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
44.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
44.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
44.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
44.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
44.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
43.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
42.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
41.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
41.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
41.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
41.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
41.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
41.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
41.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
40.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
40.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
39.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
39.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
39.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
39.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
39.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
38.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
38.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
37.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
37.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
36.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
36.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
36.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
36.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
36.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
34.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
33.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
32.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
32.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
32.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
31.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
30.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
28.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NGRN is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.8
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
186.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
150.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
143.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
134.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
129.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
124.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
121.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
121.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
120.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
119.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
116.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
114.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
113.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
113.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
107.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
106.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
106.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
105.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
102.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
102.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
99.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
97.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
95.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
94.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
93.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
93.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
93.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
92.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
91.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
91.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
87.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
85.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
84.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
84.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
83.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
82.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
79.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
79.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
78.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
78.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
78.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
77.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
77.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
74.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
74.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
74.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
74.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
73.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
73.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
72.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
71.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
71.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
70.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
70.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
70.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
69.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
68.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
67.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
67.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
66.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
66.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
66.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
66.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
65.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
65.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
65.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
65.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
64.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
63.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
63.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
62.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
61.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
61.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
61.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
61.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
60.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
60.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
59.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
59.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
59.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
59.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
59.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
58.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
58.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
58.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
57.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
57.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
56.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
56.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
56.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
56.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
55.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
55.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
55.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
55.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
55.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
55.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
55.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
54.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
54.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
54.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
54.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
52.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
52.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
51.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
51.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
51.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
51.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
51.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
51.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
51.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
50.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
50.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
48.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
48.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
48.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
48.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
48.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
48.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
48.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
48.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
48.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
47.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
47.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
46.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
45.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
45.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
45.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
45.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
44.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
44.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
44.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
44.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
43.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
43.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
43.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
43.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
42.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
42.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
41.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
41.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
41.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
40.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
40.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
40.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
40.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
39.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
39.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
39.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
37.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
36.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
32.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
30.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
1.7
513
Tumor
1.4
553
Tumor
1.3
965
Tumor
1.3
925
Tumor
1.2
477
Tumor
1.2
533
Tumor
1.0
557
Tumor
1.0
473
Tumor
0.9
1041
Tumor
0.9
883
Tumor
0.8
911
Tumor
0.8
195
Tumor
0.8
361
Tumor
0.7
627
Tumor
0.7
524
Normal
0.7
937
Tumor
0.6
365
Tumor
0.6
957
Tumor
0.6
554
Normal
0.6
615
Tumor
0.6
535
Tumor
0.6
483
Tumor
0.6
135
Tumor
0.5
685
Tumor
0.5
641
Tumor
0.5
231
Tumor
0.5
917
Tumor
0.5
411
Tumor
0.5
137
Tumor
0.5
353
Tumor
0.5
471
Tumor
0.5
415
Tumor
0.4
983
Tumor
0.4
967
Tumor
0.4
482
Normal
0.4
528
Normal
0.4
617
Tumor
0.4
481
Tumor
0.4
493
Tumor
0.4
145
Tumor
0.4
723
Tumor
0.4
922
Normal
0.4
951
Tumor
0.4
618
Normal
0.4
713
Tumor
0.4
368
Normal
0.4
488
Normal
0.4
191
Tumor
0.4
563
Tumor
0.4
357
Tumor
0.4
355
Tumor
0.3
564
Normal
0.3
616
Normal
0.3
376
Normal
0.3
698
Normal
0.3
367
Tumor
0.3
494
Normal
0.3
913
Tumor
0.3
1043
Tumor
0.3
391
Tumor
0.3
393
Tumor
0.3
484
Normal
0.3
375
Tumor
0.3
697
Tumor
0.3
461
Tumor
0.3
213
Tumor
0.3
953
Tumor
0.3
823
Tumor
0.3
926
Normal
0.3
1025
Tumor
0.3
384
Normal
0.3
968
Normal
0.3
127
Tumor
0.3
923
Tumor
0.2
571
Tumor
0.2
572
Normal
0.2
362
Normal
0.2
327
Tumor
0.2
546
Normal
0.2
642
Normal
0.2
388
Normal
0.2
1032
Normal
0.2
1015
Tumor
0.2
394
Normal
0.2
498
Normal
0.2
636
Normal
0.2
567
Tumor
0.2
526
Normal
0.2
267
Tumor
0.2
523
Tumor
0.2
136
Normal
0.2
354
Normal
0.2
142
Normal
0.2
648
Normal
0.2
1044
Normal
0.2
218
Normal
0.2
1046
Normal
0.2
342
Normal
0.2
574
Normal
0.2
568
Normal
0.2
1021
Tumor
0.2
366
Normal
0.2
915
Tumor
0.2
963
Tumor
0.2
435
Tumor
0.2
492
Normal
0.2
672
Normal
0.2
742
Normal
0.1
628
Normal
0.1
392
Normal
0.1
187
Tumor
0.1
387
Tumor
0.1
516
Normal
0.1
514
Normal
0.1
536
Normal
0.1
865
Tumor
0.1
412
Normal
0.1
472
Normal
0.1
976
Normal
0.1
912
Normal
0.1
938
Normal
0.1
443
Tumor
0.1
1013
Tumor
0.1
487
Tumor
0.1
363
Tumor
0.1
474
Normal
0.1
715
Tumor
0.1
722
Normal
0.1
964
Normal
0.1
467
Tumor
0.1
858
Normal
0.1
861
Tumor
0.1
491
Tumor
0.1
132
Normal
0.1
314
Normal
0.1
696
Normal
0.1
716
Normal
0.1
356
Normal
0.1
358
Normal
0.1
1027
Tumor
0.1
221
Tumor
0.1
952
Normal
0.1
958
Normal
0.1
396
Normal
0.1
364
Normal
0.1
427
Tumor
0.0
352
Normal
0.0
728
Normal
0.0
277
Tumor
0.0
446
Normal
0.0
383
Tumor
0.0
1026
Normal
0.0
745
Tumor
0.0
328
Normal
0.0
462
Normal
0.0
1042
Normal
0.0
497
Tumor
0.0
214
Normal
0.0
982
Normal
0.0
1045
Tumor
0.0
573
Tumor
0.0
343
Tumor
0.0
851
Tumor
0.0
921
Tumor
0.0
351
Tumor
0.0
817
Tumor
0.0
666
Normal
0.0
534
Normal
0.0
1016
Normal
0.0
196
Normal
0.0
518
Normal
0.0
924
Normal
0.0
558
Normal
0.0
714
Normal
0.0
944
Normal
0.0
268
Normal
0.0
984
Normal
0.0
978
Normal
0.0
695
Tumor
0.0
278
Normal
0.0
966
Normal
0.0
1022
Normal
0.0
344
Normal
0.0
721
Tumor
0.0
436
Normal
0.0
1014
Normal
0.0
416
Normal
0.0
386
Normal
0.0
232
Normal
0.0
525
Tumor
0.0
138
Normal
0.0
818
Normal
0.0
916
Normal
0.0
217
Tumor
0.0
341
Tumor
0.0
126
Normal
0.0
261
Tumor
0.0
466
Normal
-0.1
141
Tumor
-0.1
423
Tumor
-0.1
664
Normal
-0.1
448
Normal
-0.1
724
Normal
-0.1
258
Normal
-0.1
977
Tumor
-0.1
262
Normal
-0.1
741
Tumor
-0.1
113
Tumor
-0.1
744
Normal
-0.1
1028
Normal
-0.1
538
Normal
-0.1
272
Normal
-0.1
395
Tumor
-0.1
422
Normal
-0.1
738
Normal
-0.1
955
Tumor
-0.1
433
Tumor
-0.1
451
Tumor
-0.1
877
Tumor
-0.1
517
Tumor
-0.1
852
Normal
-0.1
863
Tumor
-0.1
444
Normal
-0.1
918
Normal
-0.1
1031
Tumor
-0.1
981
Tumor
-0.1
881
Tumor
-0.1
478
Normal
-0.1
271
Tumor
-0.1
455
Tumor
-0.1
222
Normal
-0.1
662
Normal
-0.1
857
Tumor
-0.1
785
Tumor
-0.1
447
Tumor
-0.1
146
Normal
-0.1
816
Normal
-0.1
131
Tumor
-0.1
257
Tumor
-0.2
434
Normal
-0.2
867
Tumor
-0.2
312
Normal
-0.2
192
Normal
-0.2
332
Normal
-0.2
665
Tumor
-0.2
527
Tumor
-0.2
456
Normal
-0.2
298
Normal
-0.2
956
Normal
-0.2
864
Normal
-0.2
432
Normal
-0.2
112
Tumor
-0.2
425
Tumor
-0.2
975
Tumor
-0.2
385
Tumor
-0.2
431
Tumor
-0.2
882
Normal
-0.2
311
Tumor
-0.2
297
Tumor
-0.2
172
Normal
-0.2
755
Tumor
-0.2
124
Normal
-0.2
954
Normal
-0.2
686
Normal
-0.3
111
Normal
-0.3
114
Normal
-0.3
468
Normal
-0.3
815
Tumor
-0.3
426
Normal
-0.3
515
Tumor
-0.3
635
Tumor
-0.3
148
Normal
-0.3
331
Tumor
-0.3
671
Tumor
-0.3
421
Tumor
-0.3
313
Tumor
-0.3
413
Tumor
-0.3
171
Tumor
-0.3
128
Normal
-0.3
465
Tumor
-0.3
878
Normal
-0.3
162
Normal
-0.3
868
Normal
-0.3
123
Tumor
-0.3
452
Normal
-0.3
824
Normal
-0.3
414
Normal
-0.3
186
Normal
-0.3
777
Tumor
-0.4
445
Tumor
-0.4
464
Normal
-0.4
161
Tumor
-0.4
756
Normal
-0.4
727
Tumor
-0.4
463
Tumor
-0.4
663
Tumor
-0.4
862
Normal
-0.4
743
Tumor
-0.4
737
Tumor
-0.4
873
Tumor
-0.5
884
Normal
-0.5
914
Normal
-0.5
943
Tumor
-0.5
188
Normal
-0.5
185
Tumor
-0.5
866
Normal
-0.5
786
Normal
-0.6
778
Normal
-0.6
647
Tumor
-0.6
428
Normal
-0.6
814
Normal
-0.6
545
Tumor
-0.6
874
Normal
-0.6
424
Normal
-0.7
746
Normal
-0.7
147
Tumor
-0.7
813
Tumor
-0.7
125
Tumor
-0.8
661
Tumor
-0.8
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
