MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.9 nTPM
HPA Brain:107.9 nTPM
GTEx:43.9 nTPM
FANTOM5:285.3 Scaled Tags Per Million
Pig:79.5 nTPM
Mouse:130.2 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 107.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.2
2219 Male, age 76, both hemispheres 120.5
2019 Male, age 18, unknown 118.3
1833 Male, age 53, unknown 94.0
2586 Male, age 75, left hemisphere 91.5
2828 Female, age 72, unknown 89.3
1830 Male, age 51, unknown 86.6
1827 Male, age 72, unknown 82.1
1870 Female, age 42, unknown 79.4
2411 Female, age 72, unknown 74.7
2666 Male, age 74, left hemisphere 65.4
Dorsal raphe nucleus
nTPM: 76.7
2750 Male, age 76, both hemispheres 90.0
2016 Female, age 72, unknown 85.2
1828 Male, age 53, unknown 76.7
2298 Female, age 72, unknown 67.3
2047 Male, age 72, unknown 64.1
Inferior colliculus
nTPM: 91.6
2849 Male, age 72, unknown 106.9
1848 Female, age 42, unknown 92.8
2097 Female, age 72, unknown 84.7
1890 Male, age 53, unknown 81.9
Median raphe nucleus
nTPM: 95.8
2220 Male, age 76, midline 95.8
Periaquaductal grey, anterior
nTPM: 80.9
1795 Male, age 51, unknown 85.1
2502 Female, age 75, unknown 79.1
1947 Male, age 18, unknown 78.5
Periaquaductal grey, dorsal
nTPM: 90.2
2850 Male, age 76, both hemispheres 98.1
2464 Female, age 72, unknown 91.3
1831 Male, age 72, unknown 86.7
1840 Male, age 53, unknown 84.8
Periaquaductal grey, lateral
nTPM: 87.5
2140 Male, age 76, both hemispheres 96.0
2272 Male, age 74, both hemispheres 86.6
2053 Male, age 18, unknown 80.0
Pretectal area
nTPM: 107.9
2007 Male, age 72, unknown 126.2
1817 Female, age 42, unknown 125.7
1815 Male, age 53, unknown 117.2
1816 Male, age 51, unknown 113.2
2316 Male, age 76, right hemisphere 111.3
2667 Female, age 75, unknown 107.5
2224 Female, age 72, unknown 106.2
2273 Male, age 74, both hemispheres 105.3
1944 Female, age 72, unknown 98.2
2407 Male, age 75, both hemispheres 94.8
2825 Male, age 18, unknown 81.0
Red nucleus
nTPM: 94.4
2785 Male, age 18, unknown 117.8
2725 Female, age 75, unknown 102.3
1865 Male, age 51, unknown 100.4
1954 Female, age 42, unknown 95.9
1904 Male, age 53, unknown 95.7
2823 Male, age 76, right hemisphere 95.4
2588 Male, age 74, left hemisphere 95.1
2503 Female, age 72, unknown 92.1
2227 Male, age 72, unknown 89.8
1821 Female, age 72, unknown 89.7
2769 Male, age 72, unknown 88.4
2584 Male, age 75, left hemisphere 70.4
Substantia nigra
nTPM: 71.9
2583 Male, age 75, right hemisphere 87.9
1889 Female, age 72, unknown 87.1
2699 Male, age 18, unknown 75.4
1941 Male, age 53, unknown 73.6
2409 Female, age 72, unknown 72.7
2590 Female, age 75, unknown 71.4
2241 Male, age 72, unknown 63.8
2665 Male, age 74, both hemispheres 63.5
1916 Female, age 42, unknown 62.0
1851 Male, age 51, unknown 61.8
Superior colliculus
nTPM: 92.8
1995 Male, age 72, unknown 109.7
1913 Female, age 42, unknown 108.0
1895 Male, age 76, right hemisphere 105.7
2087 Female, age 72, unknown 96.2
1839 Male, age 51, unknown 90.5
1796 Male, age 53, unknown 89.2
2668 Female, age 75, unknown 86.0
2664 Male, age 75, both hemispheres 82.6
2587 Male, age 74, left hemisphere 82.3
2261 Male, age 18, unknown 77.4
Ventral tegmental area
nTPM: 82.1
2218 Male, age 76, both hemispheres 100.8
2223 Female, age 72, unknown 95.0
1942 Male, age 51, unknown 81.9
2021 Male, age 53, unknown 80.4
2410 Female, age 72, unknown 74.3
1915 Female, age 42, unknown 60.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.9
Samples: 139

Max nTPM: 118.9
Min nTPM: 19.8
Std nTPM: 18.1
Median nTPM: 39.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 118.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 112.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 104.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 102.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 101.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 95.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 94.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 83.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 72.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 69.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 67.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 285.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 285.3
FF:10158-103A5 76 years, female 285.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 79.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.1
Samples: 4

Max nTPM: 42.3
Min nTPM: 30.0
Sample A Female 42.3
Sample B Female 30.0
Sample C Male 38.0
Sample D Male 38.1
Midbrain
nTPM: 78.2
Samples: 4

Max nTPM: 153.4
Min nTPM: 38.2
Sample A Female 38.2
Sample B Female 46.5
Sample C Male 153.4
Sample D Male 74.5
Periaqueductal gray
nTPM: 48.3
Samples: 3

Max nTPM: 53.3
Min nTPM: 43.8
Sample B Female 53.3
Sample C Male 47.7
Sample D Male 43.8
Superior colliculi
nTPM: 79.5
Samples: 4

Max nTPM: 117.6
Min nTPM: 42.7
Sample A Female 74.0
Sample B Female 42.7
Sample C Male 117.6
Sample D Male 83.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 130.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 130.2
Samples: 4

Max nTPM: 136.1
Min nTPM: 124.5
Sample A Male 126.8
Sample B Male 133.5
Sample C Female 136.1
Sample D Female 124.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
77866868 Antisense, RP_070129_01_E11, Mouse strain C57BL/6J (56 days, male) 8.0
574 Antisense, RP_Baylor_103392, Mouse strain C57BL/6J (56 days, male) 4.3
573 Antisense, RP_Baylor_103392, Mouse strain C57BL/6J (56 days, male) 1.4

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