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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LIMK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
59.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
58.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
56.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
32.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LIMK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
231
Samples
Sample
Description
TPM
DO50845
0 years, male, NA, stage:3, alive, 210 days
79.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
76.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
63.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
28.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
1.3
395
Tumor
1.1
865
Tumor
1.1
425
Tumor
0.9
573
Tumor
0.9
1025
Tumor
0.8
223
Tumor
0.8
311
Tumor
0.7
467
Tumor
0.6
285
Tumor
0.6
635
Tumor
0.6
813
Tumor
0.6
713
Tumor
0.6
661
Tumor
0.6
213
Tumor
0.6
523
Tumor
0.5
527
Tumor
0.5
447
Tumor
0.5
283
Tumor
0.5
1021
Tumor
0.5
195
Tumor
0.5
393
Tumor
0.5
257
Tumor
0.5
497
Tumor
0.5
211
Tumor
0.5
297
Tumor
0.5
663
Tumor
0.5
327
Tumor
0.5
917
Tumor
0.5
817
Tumor
0.4
525
Tumor
0.4
957
Tumor
0.4
557
Tumor
0.4
814
Normal
0.4
743
Tumor
0.4
125
Tumor
0.4
343
Tumor
0.4
191
Tumor
0.4
777
Tumor
0.4
187
Tumor
0.4
724
Normal
0.4
131
Tumor
0.4
697
Tumor
0.3
881
Tumor
0.3
217
Tumor
0.3
385
Tumor
0.3
671
Tumor
0.3
983
Tumor
0.3
745
Tumor
0.3
545
Tumor
0.3
367
Tumor
0.3
353
Tumor
0.2
737
Tumor
0.2
161
Tumor
0.2
221
Tumor
0.2
647
Tumor
0.2
642
Normal
0.2
923
Tumor
0.2
463
Tumor
0.2
975
Tumor
0.2
721
Tumor
0.2
147
Tumor
0.2
355
Tumor
0.2
341
Tumor
0.2
331
Tumor
0.2
937
Tumor
0.2
455
Tumor
0.2
443
Tumor
0.2
375
Tumor
0.2
617
Tumor
0.2
823
Tumor
0.2
267
Tumor
0.2
271
Tumor
0.2
445
Tumor
0.2
231
Tumor
0.2
357
Tumor
0.2
1015
Tumor
0.2
112
Tumor
0.1
533
Tumor
0.1
953
Tumor
0.1
636
Normal
0.1
135
Tumor
0.1
873
Tumor
0.1
861
Tumor
0.1
471
Tumor
0.1
137
Tumor
0.1
313
Tumor
0.1
227
Tumor
0.1
616
Normal
0.1
1043
Tumor
0.1
128
Normal
0.1
358
Normal
0.1
145
Tumor
0.1
433
Tumor
0.1
141
Tumor
0.1
517
Tumor
0.1
461
Tumor
0.1
427
Tumor
0.1
618
Normal
0.0
185
Tumor
0.0
913
Tumor
0.0
857
Tumor
0.0
981
Tumor
0.0
413
Tumor
0.0
493
Tumor
0.0
123
Tumor
0.0
391
Tumor
0.0
967
Tumor
0.0
515
Tumor
0.0
352
Normal
0.0
571
Tumor
0.0
877
Tumor
0.0
421
Tumor
0.0
615
Tumor
0.0
627
Tumor
-0.1
955
Tumor
-0.1
111
Normal
-0.1
126
Normal
-0.1
851
Tumor
-0.1
567
Tumor
-0.1
451
Tumor
-0.1
342
Normal
-0.1
1026
Normal
-0.1
344
Normal
-0.1
261
Tumor
-0.1
536
Normal
-0.1
411
Tumor
-0.1
277
Tumor
-0.1
628
Normal
-0.1
943
Tumor
-0.1
755
Tumor
-0.1
188
Normal
-0.1
286
Normal
-0.1
977
Tumor
-0.1
363
Tumor
-0.1
114
Normal
-0.1
272
Normal
-0.1
268
Normal
-0.1
127
Tumor
-0.1
535
Tumor
-0.1
477
Tumor
-0.2
354
Normal
-0.2
351
Tumor
-0.2
492
Normal
-0.2
262
Normal
-0.2
925
Tumor
-0.2
1022
Normal
-0.2
951
Tumor
-0.2
874
Normal
-0.2
862
Normal
-0.2
938
Normal
-0.2
387
Tumor
-0.2
546
Normal
-0.2
863
Tumor
-0.2
124
Normal
-0.2
465
Tumor
-0.2
456
Normal
-0.2
963
Tumor
-0.2
1045
Tumor
-0.2
392
Normal
-0.2
434
Normal
-0.2
483
Tumor
-0.2
867
Tumor
-0.2
815
Tumor
-0.2
396
Normal
-0.2
498
Normal
-0.2
916
Normal
-0.2
142
Normal
-0.2
746
Normal
-0.2
956
Normal
-0.2
1013
Tumor
-0.2
148
Normal
-0.2
921
Tumor
-0.2
146
Normal
-0.3
563
Tumor
-0.3
491
Tumor
-0.3
1028
Normal
-0.3
537
Tumor
-0.3
914
Normal
-0.3
388
Normal
-0.3
966
Normal
-0.3
685
Tumor
-0.3
383
Tumor
-0.3
218
Normal
-0.3
1027
Tumor
-0.3
641
Tumor
-0.3
394
Normal
-0.3
911
Tumor
-0.3
431
Tumor
-0.3
1016
Normal
-0.3
162
Normal
-0.3
172
Normal
-0.3
554
Normal
-0.3
866
Normal
-0.3
534
Normal
-0.3
864
Normal
-0.3
528
Normal
-0.3
513
Tumor
-0.3
136
Normal
-0.3
1042
Normal
-0.3
132
Normal
-0.3
727
Tumor
-0.3
186
Normal
-0.3
553
Tumor
-0.3
952
Normal
-0.3
524
Normal
-0.3
1044
Normal
-0.3
538
Normal
-0.3
284
Normal
-0.3
466
Normal
-0.4
868
Normal
-0.4
728
Normal
-0.4
965
Tumor
-0.4
698
Normal
-0.4
816
Normal
-0.4
978
Normal
-0.4
452
Normal
-0.4
852
Normal
-0.4
574
Normal
-0.4
878
Normal
-0.4
696
Normal
-0.4
478
Normal
-0.4
386
Normal
-0.4
365
Tumor
-0.4
228
Normal
-0.4
778
Normal
-0.4
487
Tumor
-0.4
883
Tumor
-0.4
1031
Tumor
-0.4
858
Normal
-0.4
448
Normal
-0.4
924
Normal
-0.4
412
Normal
-0.4
915
Tumor
-0.4
484
Normal
-0.4
738
Normal
-0.4
436
Normal
-0.4
918
Normal
-0.4
415
Tumor
-0.4
138
Normal
-0.4
494
Normal
-0.4
468
Normal
-0.4
1041
Tumor
-0.4
212
Normal
-0.4
968
Normal
-0.4
224
Normal
-0.5
568
Normal
-0.5
171
Tumor
-0.5
518
Normal
-0.5
716
Normal
-0.5
364
Normal
-0.5
572
Normal
-0.5
744
Normal
-0.5
258
Normal
-0.5
464
Normal
-0.5
982
Normal
-0.5
516
Normal
-0.5
416
Normal
-0.5
564
Normal
-0.5
715
Tumor
-0.5
328
Normal
-0.5
232
Normal
-0.5
722
Normal
-0.5
192
Normal
-0.5
926
Normal
-0.5
435
Tumor
-0.5
944
Normal
-0.5
976
Normal
-0.5
558
Normal
-0.5
954
Normal
-0.6
1032
Normal
-0.6
785
Tumor
-0.6
922
Normal
-0.6
662
Normal
-0.6
742
Normal
-0.6
714
Normal
-0.6
488
Normal
-0.6
214
Normal
-0.6
1046
Normal
-0.6
368
Normal
-0.6
196
Normal
-0.6
526
Normal
-0.6
958
Normal
-0.6
984
Normal
-0.6
756
Normal
-0.6
314
Normal
-0.6
912
Normal
-0.6
444
Normal
-0.6
695
Tumor
-0.6
723
Tumor
-0.6
964
Normal
-0.6
312
Normal
-0.6
1014
Normal
-0.6
222
Normal
-0.6
686
Normal
-0.6
786
Normal
-0.7
473
Tumor
-0.7
361
Tumor
-0.7
362
Normal
-0.7
474
Normal
-0.7
741
Tumor
-0.7
882
Normal
-0.7
824
Normal
-0.7
356
Normal
-0.7
426
Normal
-0.7
481
Tumor
-0.7
462
Normal
-0.7
514
Normal
-0.8
432
Normal
-0.8
298
Normal
-0.8
423
Tumor
-0.8
446
Normal
-0.8
884
Normal
-0.8
366
Normal
-0.8
422
Normal
-0.8
665
Tumor
-0.8
278
Normal
-0.8
376
Normal
-0.9
482
Normal
-0.9
818
Normal
-0.9
472
Normal
-0.9
672
Normal
-0.9
332
Normal
-1.0
648
Normal
-1.0
664
Normal
-1.0
384
Normal
-1.1
428
Normal
-1.1
424
Normal
-1.1
414
Normal
-1.1
666
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
