Expression of IST1 in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

IST1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 24.74

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

18.6

Number of samples

362

Samples

Sample	Description	TPM
TCGA-DD-A4NA-01A	0 years, female, white, stage:Stage IIIC, alive, 1008 days	86.0
TCGA-CC-5264-01A	0 years, male, asian, stage:Stage IIIA, dead, 102 days	85.9
TCGA-ED-A82E-01A	0 years, female, asian, stage:Stage IIIA, alive, 408 days	79.9
TCGA-ZP-A9D2-01A	0 years, male, white, stage:'--, dead, 765 days	70.7
TCGA-CC-A1HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 101 days	59.0
TCGA-ED-A97K-01A	0 years, male, asian, stage:Stage IIIA, alive, 6 days	58.5
TCGA-ED-A7PX-01A	0 years, female, asian, stage:Stage II, alive, 6 days	53.1
TCGA-CC-A3MA-01A	0 years, male, asian, stage:Stage IIIA, dead, 303 days	53.0
TCGA-CC-A7IK-01A	0 years, male, asian, stage:Stage IIIA, dead, 262 days	52.5
TCGA-DD-AADD-01A	0 years, male, asian, stage:Stage I, alive, 1231 days	51.6
TCGA-G3-A7M6-01A	0 years, female, white, stage:Stage I, alive, 632 days	50.6
TCGA-CC-5261-01A	0 years, male, asian, stage:Stage II, dead, 97 days	49.0
TCGA-BC-A112-01A	0 years, male, white, stage:'--, dead, 153 days	48.0
TCGA-CC-A7IJ-01A	0 years, male, asian, stage:Stage II, alive, 382 days	47.8
TCGA-BC-A10Q-01A	0 years, female, white, stage:'--, dead, 1135 days	47.0
TCGA-CC-5260-01A	0 years, female, asian, stage:Stage IIIC, dead, 87 days	47.0
TCGA-5C-A9VG-01A	0 years, male, white, stage:Stage II, alive, 328 days	46.4
TCGA-DD-A1EF-01A	0 years, female, white, stage:Stage I, dead, 394 days	45.2
TCGA-5R-AA1C-01A	0 years, male, white, stage:Stage II, alive, 520 days	44.4
TCGA-DD-A1EA-01A	0 years, male, asian, stage:Stage II, alive, 2415 days	42.9
TCGA-DD-A73E-01A	0 years, male, white, stage:Stage I, alive, 44 days	42.8
TCGA-DD-AAC8-01A	0 years, male, asian, stage:Stage I, dead, 16 days	40.7
TCGA-DD-AADY-01A	0 years, female, asian, stage:Stage I, alive, 555 days	40.3
TCGA-ED-A5KG-01A	0 years, female, asian, stage:Stage II, alive, 854 days	38.0
TCGA-DD-A73C-01A	0 years, female, white, stage:Stage IIIA, alive, 701 days	38.0
TCGA-K7-AAU7-01A	0 years, male, white, stage:Stage II, alive, 359 days	37.5
TCGA-EP-A12J-01A	0 years, male, black or african american, stage:Stage I, alive, 570 days	37.5
TCGA-2Y-A9H2-01A	0 years, female, white, stage:Stage I, alive, 1731 days	36.7
TCGA-XR-A8TE-01A	0 years, male, white, stage:Stage IIIA, alive, 925 days	35.8
TCGA-DD-A1EL-01A	0 years, male, black or african american, stage:Stage II, dead, 415 days	35.8
TCGA-DD-AA3A-01A	0 years, female, white, stage:Stage I, dead, 410 days	35.5
TCGA-GJ-A3OU-01A	0 years, male, white, stage:Stage I, alive, 879 days	35.4
TCGA-DD-AACA-01A	0 years, male, asian, stage:Stage I, alive, 2301 days	35.2
TCGA-YA-A8S7-01A	0 years, male, white, stage:Stage IIIA, dead, 412 days	35.2
TCGA-UB-A7MC-01A	0 years, male, white, stage:Stage IIIA, alive, 500 days	35.1
TCGA-G3-AAV4-01A	0 years, female, white, stage:Stage I, dead, 27 days	34.5
TCGA-2Y-A9GS-01A	0 years, male, white, stage:'--, dead, 724 days	33.9
TCGA-DD-AAEK-01A	0 years, male, asian, stage:Stage II, alive, 1067 days	33.8
TCGA-DD-A1EE-01A	0 years, male, white, stage:Stage IIIA, dead, 349 days	33.7
TCGA-G3-A7M9-01A	0 years, male, white, stage:Stage IIIB, dead, 56 days	33.6
TCGA-DD-A114-01A	0 years, male, black or african american, stage:Stage II, dead, 1149 days	33.6
TCGA-G3-AAV1-01A	0 years, male, asian, stage:Stage IIIC, dead, 359 days	33.0
TCGA-FV-A3R3-01A	0 years, female, white, stage:Stage I, dead, 366 days	33.0
TCGA-CC-A3M9-01A	0 years, male, asian, stage:Stage IIIA, dead, 300 days	33.0
TCGA-ZP-A9CV-01A	0 years, male, white, stage:'--, dead, 1088 days	32.3
TCGA-ZP-A9D4-01A	0 years, female, white, stage:'--, alive, 395 days	32.2
TCGA-DD-A4NB-01A	0 years, male, white, stage:Stage I, alive, 989 days	31.9
TCGA-DD-A1EC-01A	0 years, female, white, stage:Stage I, alive, 602 days	31.6
TCGA-DD-A39W-01A	0 years, female, white, stage:Stage III, dead, 827 days	31.4
TCGA-BC-A8YO-01A	0 years, female, white, stage:Stage IIIC, alive, 562 days	31.1
TCGA-DD-AAW3-01A	0 years, male, asian, stage:Stage I, alive, 1633 days	30.9
TCGA-ED-A66X-01A	0 years, male, asian, stage:Stage IIIA, alive, 406 days	29.7
TCGA-DD-A1EH-01A	0 years, male, white, stage:Stage III, alive, 1495 days	29.7
TCGA-FV-A4ZQ-01A	0 years, male, white, stage:Stage I, alive, 12 days	29.7
TCGA-DD-AACH-01A	0 years, male, asian, stage:Stage II, dead, 195 days	29.6
TCGA-CC-5263-01A	0 years, male, asian, stage:Stage IIIA, dead, 129 days	29.2
TCGA-DD-AACX-01A	0 years, male, asian, stage:Stage II, alive, 170 days	28.9
TCGA-DD-AADB-01A	0 years, male, asian, stage:Stage I, alive, 1242 days	28.8
TCGA-CC-A5UD-01A	0 years, male, asian, stage:Stage IIIA, dead, 304 days	28.7
TCGA-DD-AAD0-01A	0 years, female, asian, stage:Stage I, alive, 137 days	28.7
TCGA-CC-A7IH-01A	0 years, male, asian, stage:Stage IIIA, alive, 365 days	28.3
TCGA-FV-A3I0-01A	0 years, female, white, stage:Stage II, alive, 848 days	27.9
TCGA-DD-AACE-01A	0 years, male, asian, stage:Stage I, alive, 2184 days	27.4
TCGA-XR-A8TG-01A	0 years, male, white, stage:Stage I, alive, 898 days	27.2
TCGA-GJ-A9DB-01A	0 years, male, white, stage:Stage I, dead, 67 days	27.1
TCGA-ED-A66Y-01A	0 years, female, asian, stage:Stage IIIA, dead, 296 days	26.8
TCGA-RC-A6M4-01A	0 years, female, white, stage:Stage IIIA, alive, 22 days	26.6
TCGA-UB-AA0U-01A	0 years, male, white, stage:Stage II, alive, 327 days	26.5
TCGA-G3-A25T-01A	0 years, female, white, stage:Stage IIIA, alive, 1553 days	26.3
TCGA-CC-A8HS-01A	0 years, male, asian, stage:Stage IIIC, dead, 300 days	26.2
TCGA-K7-A5RG-01A	0 years, male, black or african american, stage:Stage I, alive, 519 days	26.0
TCGA-ZP-A9D0-01A	0 years, female, black or african american, stage:'--, alive, 1091 days	26.0
TCGA-DD-A4NS-01A	0 years, female, white, stage:Stage I, dead, 2456 days	26.0
TCGA-UB-A7MA-01A	0 years, female, white, stage:Stage II, alive, 848 days	25.9
TCGA-DD-A118-01A	0 years, female, white, stage:Stage II, alive, 3437 days	25.9
TCGA-FV-A3I1-01A	0 years, female, white, stage:Stage II, dead, 247 days	25.9
TCGA-DD-AACK-01A	0 years, male, asian, stage:Stage I, alive, 9 days	25.7
TCGA-BC-A10U-01A	0 years, male, white, stage:'--, dead, 837 days	25.6
TCGA-RC-A6M6-01A	0 years, male, white, stage:Stage II, alive, 9 days	25.6
TCGA-2Y-A9GX-01A	0 years, male, white, stage:Stage I, alive, 2442 days	25.6
TCGA-DD-A73D-01A	0 years, female, white, stage:Stage II, alive, 693 days	25.5
TCGA-BC-A10W-01A	0 years, male, asian, stage:'--, dead, 91 days	25.4
TCGA-G3-A25Y-01A	0 years, female, asian, stage:Stage I, dead, 452 days	25.2
TCGA-DD-AADV-01A	0 years, male, asian, stage:Stage I, alive, 574 days	25.0
TCGA-DD-AACZ-01A	0 years, female, asian, stage:Stage I, dead, 171 days	25.0
TCGA-2Y-A9HB-01A	0 years, male, stage:Stage I, alive, 260 days	24.5
TCGA-DD-A4NV-01A	0 years, male, white, stage:Stage IIIA, alive, 2398 days	24.3
TCGA-BC-A3KF-01A	0 years, female, white, stage:Stage I, alive, 8 days	24.3
TCGA-DD-A1EG-01A	0 years, male, white, stage:Stage I, dead, 1372 days	24.3
TCGA-2Y-A9H0-01A	0 years, male, white, stage:Stage IIIA, alive, 3675 days	24.3
TCGA-RC-A6M5-01A	0 years, female, white, stage:Stage IVA, alive, 15 days	24.2
TCGA-DD-AAW2-01A	0 years, male, asian, stage:Stage I, alive, 1855 days	24.1
TCGA-CC-A7II-01A	0 years, male, asian, stage:Stage IIIA, alive, 399 days	24.1
TCGA-5R-AA1D-01A	0 years, female, white, stage:Stage IIIA, alive, 449 days	23.7
TCGA-DD-AAD1-01A	0 years, female, asian, stage:Stage I, alive, 564 days	23.6
TCGA-BC-A10Y-01A	0 years, male, white, stage:'--, dead, 711 days	23.5
TCGA-RC-A7SK-01A	0 years, male, asian, stage:Stage I, alive, 472 days	23.4
TCGA-5C-A9VH-01A	0 years, male, white, stage:Stage I, alive, 322 days	23.3
TCGA-G3-A6UC-01A	0 years, male, white, stage:Stage IIIB, alive, 671 days	23.3
TCGA-DD-AAVS-01A	0 years, male, asian, stage:Stage I, alive, 1823 days	23.2
TCGA-UB-A7ME-01A	0 years, male, asian, stage:Stage I, alive, 486 days	23.0
TCGA-UB-A7MD-01A	0 years, male, black or african american, stage:Stage I, dead, 52 days	23.0
TCGA-G3-AAV7-01A	0 years, male, asian, stage:Stage II, alive, 361 days	22.8
TCGA-LG-A9QC-01A	0 years, male, white, stage:Stage I, alive, 425 days	22.7
TCGA-BD-A3EP-01A	0 years, female, black or african american, stage:Stage I, alive, 409 days	22.7
TCGA-DD-AADW-01A	0 years, male, asian, stage:Stage I, alive, 587 days	22.6
TCGA-ED-A627-01A	0 years, male, white, stage:Stage I, alive, 423 days	22.5
TCGA-UB-A7MB-01A	0 years, male, white, stage:Stage II, alive, 601 days	22.3
TCGA-4R-AA8I-01A	0 years, male, white, stage:Stage II, dead, 262 days	22.1
TCGA-DD-A4NF-01A	0 years, male, white, stage:Stage I, alive, 942 days	22.0
TCGA-DD-AAE2-01A	0 years, male, asian, stage:Stage I, alive, 638 days	21.9
TCGA-ED-A4XI-01A	0 years, male, asian, stage:Stage II, alive, 819 days	21.7
TCGA-DD-AACW-01A	0 years, male, asian, stage:Stage I, alive, 1424 days	21.7
TCGA-DD-AAW1-01A	0 years, male, asian, stage:Stage IIIA, alive, 1989 days	21.7
TCGA-DD-AACN-01A	0 years, male, asian, stage:Stage I, alive, 1302 days	21.7
TCGA-DD-A4ND-01A	0 years, female, white, stage:Stage I, alive, 2746 days	21.5
TCGA-HP-A5N0-01A	0 years, female, stage:'--, dead, 752 days	21.5
TCGA-G3-AAV2-01A	0 years, male, white, stage:Stage I, alive, 372 days	21.5
TCGA-ED-A8O5-01A	0 years, female, asian, stage:Stage IIIA, alive, 406 days	21.3
TCGA-QA-A7B7-01A	0 years, male, black or african american, stage:Stage II, alive, 94 days	21.3
TCGA-DD-A4NK-01A	0 years, female, white, stage:Stage IIIA, dead, 1210 days	21.2
TCGA-CC-A3MB-01A	0 years, male, asian, stage:Stage IIIA, dead, 315 days	21.1
TCGA-DD-A4NN-01A	0 years, female, white, stage:Stage I, dead, 899 days	21.1
TCGA-ED-A7XP-01A	0 years, female, asian, stage:Stage II, alive, 400 days	20.9
TCGA-ZS-A9CF-01A	0 years, male, white, stage:Stage II, alive, 2412 days	20.8
TCGA-G3-AAV3-01A	0 years, female, white, stage:Stage II, alive, 412 days	20.7
TCGA-EP-A2KB-01A	0 years, female, white, stage:Stage I, dead, 596 days	20.7
TCGA-DD-A1EJ-01A	0 years, female, white, stage:Stage IIIC, dead, 1005 days	20.6
TCGA-2Y-A9H6-01A	0 years, female, white, stage:Stage I, alive, 357 days	20.5
TCGA-2Y-A9GU-01A	0 years, female, white, stage:Stage I, alive, 1939 days	20.3
TCGA-G3-A5SL-01A	0 years, male, white, stage:Stage II, alive, 621 days	20.2
TCGA-CC-A9FW-01A	0 years, male, asian, stage:Stage IIIA, alive, 248 days	20.2
TCGA-EP-A26S-01A	0 years, male, white, stage:Stage I, alive, 608 days	20.1
TCGA-G3-A3CK-01A	0 years, male, asian, stage:Stage I, alive, 585 days	20.0
TCGA-2Y-A9H5-01A	0 years, female, white, stage:Stage I, dead, 555 days	20.0
TCGA-2Y-A9GV-01A	0 years, female, white, stage:Stage I, dead, 2532 days	20.0
TCGA-UB-A7MF-01A	0 years, male, white, stage:Stage IIIA, dead, 214 days	19.9
TCGA-CC-A5UE-01A	0 years, male, asian, stage:Stage IIIB, dead, 272 days	19.6
TCGA-5R-AAAM-01A	0 years, female, white, stage:Stage II, dead, 46 days	19.6
TCGA-DD-AADC-01A	0 years, male, asian, stage:Stage I, dead, 425 days	19.5
TCGA-3K-AAZ8-01A	0 years, male, black or african american, stage:Stage IIIB, alive, 396 days	19.5
TCGA-DD-AACU-01A	0 years, male, asian, stage:Stage I, alive, 1567 days	19.3
TCGA-DD-AACT-01A	0 years, female, asian, stage:Stage I, alive, 1562 days	19.3
TCGA-DD-AADG-01A	0 years, male, asian, stage:Stage IIIA, alive, 1145 days	19.2
TCGA-DD-A4NH-01A	0 years, female, white, stage:Stage IIIB, alive, 917 days	19.1
TCGA-DD-A1EK-01A	0 years, female, white, stage:Stage IVB, dead, 558 days	19.1
TCGA-DD-AAD2-01A	0 years, male, asian, stage:Stage I, alive, 658 days	19.1
TCGA-DD-AACB-01A	0 years, female, asian, stage:Stage I, alive, 2324 days	19.1
TCGA-DD-AAVY-01A	0 years, male, asian, stage:Stage IIIA, alive, 1970 days	18.9
TCGA-FV-A496-01A	0 years, female, white, stage:Stage I, alive, 10 days	18.9
TCGA-ZP-A9CY-01A	0 years, female, white, stage:'--, alive, 782 days	18.7
TCGA-FV-A23B-01A	0 years, female, white, stage:Stage II, dead, 1852 days	18.7
TCGA-DD-AAW0-01A	0 years, male, asian, stage:Stage I, alive, 2015 days	18.7
TCGA-DD-A4NQ-01A	0 years, male, white, stage:Stage II, dead, 373 days	18.5
TCGA-ZP-A9D1-01A	0 years, female, white, stage:'--, alive, 21 days	18.5
TCGA-FV-A2QR-01A	0 years, male, white, stage:Stage I, dead, 581 days	18.5
TCGA-GJ-A6C0-01A	0 years, female, white, stage:Stage II, dead, 31 days	18.4
TCGA-BC-A10X-01A	0 years, female, white, stage:Stage IIIA, dead, 770 days	18.2
TCGA-G3-A5SJ-01A	0 years, male, white, stage:Stage I, alive, 698 days	18.2
TCGA-ED-A7PZ-01A	0 years, male, asian, stage:Stage II, alive, 6 days	18.1
TCGA-MI-A75E-01A	0 years, male, white, stage:Stage IIIC, alive, 507 days	18.1
TCGA-DD-A4NO-01A	0 years, male, white, stage:Stage I, alive, 2245 days	18.0
TCGA-DD-AACP-01A	0 years, male, asian, stage:Stage I, alive, 415 days	17.8
TCGA-DD-A11C-01A	0 years, male, white, stage:Stage I, alive, 662 days	17.8
TCGA-ZS-A9CG-01A	0 years, male, white, stage:Stage II, alive, 341 days	17.7
TCGA-G3-A5SM-01A	0 years, male, white, stage:Stage II, alive, 520 days	17.6
TCGA-DD-AADL-01A	0 years, male, asian, stage:Stage I, alive, 636 days	17.6
TCGA-DD-A1EB-01A	0 years, female, stage:Stage I, alive, 2017 days	17.5
TCGA-DD-A4NJ-01A	0 years, female, white, stage:Stage II, alive, 928 days	17.4
TCGA-2Y-A9GW-01A	0 years, male, white, stage:Stage I, dead, 1271 days	17.3
TCGA-2Y-A9H9-01A	0 years, male, white, stage:Stage I, alive, 697 days	17.3
TCGA-DD-A4NR-01A	0 years, female, white, stage:Stage I, dead, 9 days	17.1
TCGA-BC-A3KG-01A	0 years, female, white, stage:Stage II, alive, 680 days	17.1
TCGA-DD-AAVZ-01A	0 years, male, asian, stage:Stage I, alive, 1900 days	17.0
TCGA-DD-A115-01A	0 years, male, white, stage:Stage IIIA, dead, 2542 days	17.0
TCGA-ZP-A9CZ-01A	0 years, male, asian, stage:'--, alive, 706 days	17.0
TCGA-G3-A3CG-01A	0 years, male, white, stage:Stage I, alive, 673 days	16.9
TCGA-ED-A7XO-01A	0 years, male, asian, stage:Stage IIIA, alive, 427 days	16.9
TCGA-DD-A11B-01A	0 years, male, white, stage:Stage I, dead, 14 days	16.7
TCGA-2Y-A9GT-01A	0 years, male, white, stage:Stage I, dead, 1624 days	16.7
TCGA-G3-A7M8-01A	0 years, male, asian, stage:Stage I, alive, 430 days	16.4
TCGA-CC-5262-01A	0 years, male, asian, stage:Stage IIIC, dead, 103 days	16.4
TCGA-DD-AAEG-01A	0 years, female, asian, stage:Stage I, alive, 719 days	16.4
TCGA-2Y-A9H8-01A	0 years, female, white, stage:'--, dead, 633 days	16.4
TCGA-BC-A10T-01A	0 years, male, white, stage:'--, dead, 837 days	16.3
TCGA-RG-A7D4-01A	0 years, male, black or african american, stage:Stage II, alive, 1098 days	16.2
TCGA-EP-A3RK-01A	0 years, male, white, stage:Stage IIIA, alive, 363 days	16.1
TCGA-CC-A5UC-01A	0 years, male, asian, stage:Stage IIIA, dead, 347 days	16.0
TCGA-DD-AACV-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	15.9
TCGA-DD-A73F-01A	0 years, female, white, stage:Stage I, alive, 1085 days	15.8
TCGA-CC-A7IL-01A	0 years, male, asian, stage:Stage IIIA, dead, 278 days	15.7
TCGA-EP-A2KC-01A	0 years, male, black or african american, stage:Stage I, dead, 19 days	15.7
TCGA-DD-A1EI-01A	0 years, male, asian, stage:Stage I, alive, 183 days	15.5
TCGA-K7-A5RF-01A	0 years, male, white, stage:Stage I, alive, 631 days	15.3
TCGA-DD-A73A-01A	0 years, male, white, stage:Stage I, alive, 728 days	15.2
TCGA-EP-A2KA-01A	0 years, female, white, stage:Stage IIIA, dead, 627 days	15.2
TCGA-XR-A8TC-01A	0 years, female, white, stage:Stage I, alive, 1339 days	15.1
TCGA-2Y-A9HA-01A	0 years, male, white, stage:Stage II, dead, 36 days	15.1
TCGA-DD-AAD3-01A	0 years, male, asian, stage:Stage I, alive, 1295 days	15.0
TCGA-CC-A8HU-01A	0 years, female, asian, stage:Stage IIIA, dead, 344 days	14.9
TCGA-UB-AA0V-01A	0 years, female, white, stage:Stage I, alive, 314 days	14.8
TCGA-BC-A217-01A	0 years, female, white, stage:Stage II, dead, 1397 days	14.8
TCGA-DD-A4NG-01A	0 years, male, white, stage:Stage IIIA, dead, 802 days	14.7
TCGA-DD-AAVW-01A	0 years, male, asian, stage:Stage I, alive, 2317 days	14.7
TCGA-DD-AAEE-01A	0 years, male, asian, stage:Stage I, alive, 810 days	14.6
TCGA-ED-A8O6-01A	0 years, female, asian, stage:Stage IIIA, dead, 56 days	14.6
TCGA-G3-A25Z-01A	0 years, male, asian, stage:Stage I, alive, 655 days	14.6
TCGA-DD-AAVP-01A	0 years, male, asian, stage:Stage I, alive, 2752 days	14.5
TCGA-T1-A6J8-01A	0 years, male, white, stage:'--, alive, 23 days	14.4
TCGA-WX-AA46-01A	0 years, male, white, stage:Stage II, alive, 756 days	14.3
TCGA-DD-AACY-01A	0 years, male, asian, stage:Stage I, alive, 1450 days	14.1
TCGA-MI-A75G-01A	0 years, male, white, stage:Stage II, alive, 698 days	14.1
TCGA-BC-A69I-01A	0 years, male, white, stage:Stage I, alive, 387 days	14.1
TCGA-BC-A10Z-01A	0 years, female, white, stage:Stage I, dead, 34 days	14.0
TCGA-DD-AAVX-01A	0 years, male, asian, stage:Stage II, alive, 1718 days	14.0
TCGA-DD-AAVR-01A	0 years, male, asian, stage:Stage I, alive, 2513 days	13.9
TCGA-2Y-A9H7-01A	0 years, female, white, stage:Stage I, alive, 1168 days	13.9
TCGA-MI-A75I-01A	0 years, male, black or african american, stage:'--, alive, 630 days	13.9
TCGA-FV-A3R2-01A	0 years, male, white, stage:Stage I, dead, 194 days	13.9
TCGA-MR-A520-01A	0 years, male, white, stage:Stage I, alive, 229 days	13.7
TCGA-DD-AAEI-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	13.6
TCGA-BW-A5NO-01A	0 years, male, black or african american, stage:Stage IIIA, alive, 20 days	13.6
TCGA-G3-A25V-01A	0 years, male, white, stage:Stage I, alive, 860 days	13.5
TCGA-DD-A113-01A	0 years, female, white, stage:Stage II, alive, 2425 days	13.4
TCGA-DD-A3A4-01A	0 years, male, white, stage:Stage IIIA, dead, 612 days	13.3
TCGA-DD-A73B-01A	0 years, female, white, stage:Stage I, dead, 283 days	13.3
TCGA-G3-AAV5-01A	0 years, male, white, stage:Stage II, alive, 354 days	13.2
TCGA-PD-A5DF-01A	0 years, female, white, stage:Stage IIIB, dead, 639 days	13.1
TCGA-G3-A3CI-01A	0 years, male, white, stage:Stage I, alive, 180 days	12.9
TCGA-DD-A39Y-01A	0 years, male, asian, stage:Stage I, dead, 171 days	12.8
TCGA-BD-A3ER-01A	0 years, male, white, stage:Stage II, alive, 1115 days	12.8
TCGA-DD-AAD5-01A	0 years, male, asian, stage:Stage I, alive, 1345 days	12.7
TCGA-DD-AAVV-01A	0 years, male, asian, stage:Stage II, alive, 2455 days	12.7
TCGA-DD-AADP-01A	0 years, male, asian, stage:Stage I, alive, 458 days	12.7
TCGA-CC-5258-01A	0 years, male, asian, stage:Stage II, dead, 129 days	12.7
TCGA-DD-A1ED-01A	0 years, male, white, stage:Stage I, alive, 2301 days	12.7
TCGA-DD-A4NE-01A	0 years, female, white, stage:Stage IIIA, dead, 660 days	12.5
TCGA-DD-AAE7-01A	0 years, male, asian, stage:Stage I, alive, 644 days	12.5
TCGA-HP-A5MZ-01A	0 years, male, stage:Stage I, dead, 91 days	12.5
TCGA-BC-A5W4-01A	0 years, male, white, stage:Stage IIIA, dead, 547 days	12.5
TCGA-BC-A10R-01A	0 years, female, white, stage:'--, dead, 308 days	12.5
TCGA-DD-AACC-01A	0 years, male, asian, stage:Stage I, dead, 1685 days	12.4
TCGA-2Y-A9GZ-01A	0 years, female, white, stage:Stage II, dead, 848 days	12.4
TCGA-MR-A8JO-01A	0 years, male, white, stage:Stage I, alive, 330 days	12.3
TCGA-G3-A7M7-01A	0 years, male, white, stage:Stage I, alive, 361 days	12.2
TCGA-FV-A2QQ-01A	0 years, male, white, stage:Stage I, alive, 729 days	12.1
TCGA-DD-AACJ-01A	0 years, male, asian, stage:Stage II, alive, 2102 days	12.0
TCGA-DD-A11D-01A	0 years, female, white, stage:Stage I, dead, 1560 days	11.8
TCGA-DD-AACS-01A	0 years, male, asian, stage:Stage I, alive, 1804 days	11.7
TCGA-O8-A75V-01A	0 years, male, stage:Stage I, alive, 538 days	11.7
TCGA-CC-A3MC-01A	0 years, male, asian, stage:Stage IIIA, alive, 363 days	11.6
TCGA-ED-A459-01A	0 years, male, asian, stage:Stage II, alive, 910 days	11.3
TCGA-K7-A6G5-01A	0 years, male, white, stage:Stage I, alive, 512 days	11.2
TCGA-BC-A10S-01A	0 years, male, white, stage:'--, dead, 1423 days	11.2
TCGA-KR-A7K0-01A	0 years, male, white, stage:Stage I, dead, 65 days	11.1
TCGA-DD-A3A8-01A	0 years, male, white, stage:Stage II, dead, 11 days	11.1
TCGA-DD-A4NI-01A	0 years, male, white, stage:Stage II, alive, 816 days	11.1
TCGA-ZS-A9CD-01A	0 years, male, white, stage:Stage II, dead, 1386 days	10.9
TCGA-G3-A25U-01A	0 years, female, asian, stage:Stage I, alive, 1636 days	10.8
TCGA-DD-AAE9-01A	0 years, male, asian, stage:Stage I, alive, 722 days	10.8
TCGA-DD-A3A5-01A	0 years, female, white, stage:Stage III, dead, 3125 days	10.7
TCGA-BC-A110-01A	0 years, female, black or african american, stage:'--, dead, 2116 days	10.7
TCGA-ZS-A9CE-01A	0 years, female, white, stage:Stage II, alive, 1241 days	10.6
TCGA-CC-A9FS-01A	0 years, male, asian, stage:Stage II, alive, 211 days	10.6
TCGA-CC-A8HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 140 days	10.4
TCGA-XR-A8TF-01A	0 years, male, white, stage:Stage I, dead, 693 days	10.4
TCGA-DD-AAD6-01A	0 years, male, asian, stage:Stage IIIA, alive, 672 days	10.3
TCGA-DD-AAE6-01A	0 years, female, asian, stage:Stage I, alive, 141 days	10.3
TCGA-NI-A8LF-01A	0 years, male, white, stage:Stage I, alive, 799 days	10.2
TCGA-DD-AAVQ-01A	0 years, male, asian, stage:Stage I, alive, 2728 days	10.1
TCGA-DD-A3A9-01A	0 years, female, white, stage:Stage IVB, dead, 931 days	10.1
TCGA-G3-A3CH-01A	0 years, male, asian, stage:Stage IIIA, alive, 780 days	10.0
TCGA-CC-A7IE-01A	0 years, male, asian, stage:Stage IIIA, dead, 217 days	10.0
TCGA-G3-AAV6-01A	0 years, female, white, stage:Stage IIIA, dead, 65 days	9.9
TCGA-LG-A6GG-01A	0 years, female, white, stage:Stage II, alive, 387 days	9.6
TCGA-XR-A8TD-01A	0 years, female, white, stage:Stage IIIB, alive, 1030 days	9.6
TCGA-2Y-A9GY-01A	0 years, female, white, stage:Stage II, dead, 757 days	9.5
TCGA-BC-A216-01A	0 years, female, white, stage:Stage IIIA, alive, 1351 days	9.4
TCGA-WX-AA44-01A	0 years, female, white, stage:Stage I, alive, 615 days	9.2
TCGA-DD-AADU-01A	0 years, male, asian, stage:Stage II, alive, 554 days	9.1
TCGA-EP-A3JL-01A	0 years, male, white, stage:Stage I, alive, 303 days	9.0
TCGA-DD-AAE1-01A	0 years, male, asian, stage:Stage I, alive, 552 days	9.0
TCGA-KR-A7K8-01A	0 years, male, stage:Stage I, alive, 906 days	8.9
TCGA-G3-A5SI-01A	0 years, male, asian, stage:Stage II, dead, 768 days	8.9
TCGA-CC-A8HV-01A	0 years, female, asian, stage:Stage II, dead, 279 days	8.8
TCGA-DD-A4NL-01A	0 years, male, white, stage:Stage I, alive, 1711 days	8.8
TCGA-BD-A2L6-01A	0 years, male, white, stage:'--, alive, 1363 days	8.6
TCGA-DD-A39X-01A	0 years, female, white, stage:Stage I, dead, 1694 days	8.6
TCGA-MI-A75H-01A	0 years, male, white, stage:'--, alive, 747 days	8.5
TCGA-G3-A5SK-01A	0 years, male, white, stage:Stage I, alive, 744 days	8.4
TCGA-DD-AAEH-01A	0 years, male, asian, stage:Stage I, alive, 784 days	8.3
TCGA-2Y-A9H4-01A	0 years, male, black or african american, stage:Stage I, alive, 1452 days	8.3
TCGA-RC-A7S9-01A	0 years, female, asian, stage:Stage I, alive, 640 days	8.3
TCGA-DD-AADA-01A	0 years, female, asian, stage:Stage I, alive, 1233 days	7.8
TCGA-5C-AAPD-01A	0 years, male, asian, stage:Stage II, alive, 20 days	7.8
TCGA-DD-AAE3-01A	0 years, male, asian, stage:Stage I, alive, 566 days	7.6
TCGA-DD-A3A1-01A	0 years, male, stage:Stage IIIA, dead, 233 days	7.6
TCGA-DD-A3A2-01A	0 years, female, white, stage:Stage I, dead, 2131 days	7.3
TCGA-DD-AACL-01A	0 years, female, asian, stage:Stage I, dead, 107 days	7.2
TCGA-DD-AAC9-01A	0 years, male, asian, stage:Stage I, alive, 347 days	7.2
TCGA-DD-AAE0-01A	0 years, female, asian, stage:Stage IIIA, alive, 555 days	7.0
TCGA-DD-AAD8-01A	0 years, female, asian, stage:Stage I, alive, 1219 days	7.0
TCGA-DD-AAEA-01A	0 years, male, asian, stage:Stage I, alive, 575 days	6.9
TCGA-DD-AADR-01A	0 years, male, asian, stage:Stage I, alive, 2028 days	6.9
TCGA-LG-A9QD-01A	0 years, male, white, stage:Stage IIIA, alive, 366 days	6.7
TCGA-DD-AACF-01A	0 years, male, asian, stage:Stage I, dead, 365 days	6.6
TCGA-MI-A75C-01A	0 years, male, white, stage:Stage I, alive, 291 days	6.6
TCGA-DD-AADK-01A	0 years, female, asian, stage:Stage II, alive, 1049 days	6.4
TCGA-G3-A7M5-01A	0 years, male, asian, stage:Stage I, alive, 447 days	6.3
TCGA-DD-A4NP-01A	0 years, male, white, stage:Stage I, alive, 3308 days	6.2
TCGA-NI-A4U2-01A	0 years, male, white, stage:Stage IIIA, dead, 1791 days	6.2
TCGA-DD-A3A3-01A	0 years, male, asian, stage:Stage I, dead, 535 days	6.2
TCGA-DD-AADJ-01A	0 years, female, asian, stage:Stage I, alive, 1066 days	6.1
TCGA-DD-AAVU-01A	0 years, male, asian, stage:Stage II, alive, 2202 days	6.0
TCGA-DD-AACQ-01A	0 years, male, asian, stage:Stage II, dead, 432 days	6.0
TCGA-RC-A7SH-01A	0 years, male, asian, stage:Stage II, alive, 468 days	5.6
TCGA-G3-A25S-01A	0 years, male, white, stage:Stage I, dead, 416 days	5.4
TCGA-RC-A7SF-01A	0 years, male, asian, stage:Stage I, alive, 579 days	5.2
TCGA-RC-A7SB-01A	0 years, male, asian, stage:Stage II, alive, 588 days	5.1
TCGA-KR-A7K2-01A	0 years, male, white, stage:Stage I, alive, 829 days	5.1
TCGA-WQ-A9G7-01A	0 years, female, white, stage:'--, alive, 30 days	5.1
TCGA-WJ-A86L-01A	0 years, female, white, stage:Stage I, alive, 345 days	5.1
TCGA-DD-A3A6-01A	0 years, female, white, stage:Stage II, dead, 3258 days	5.0
TCGA-CC-A7IG-01A	0 years, male, asian, stage:Stage II, dead, 299 days	5.0
TCGA-KR-A7K7-01A	0 years, female, white, stage:Stage II, alive, 951 days	5.0
TCGA-G3-A25X-01A	0 years, male, asian, stage:Stage II, alive, 1779 days	4.4
TCGA-DD-AADI-01A	0 years, female, asian, stage:Stage I, alive, 1085 days	4.3
TCGA-FV-A495-01A	0 years, female, white, stage:Stage II, alive, 1 days	4.2
TCGA-DD-AADM-01A	0 years, male, asian, stage:Stage II, dead, 12 days	4.1
TCGA-BC-A69H-01A	0 years, male, white, stage:Stage II, alive, 444 days	4.0
TCGA-2Y-A9H3-01A	0 years, male, white, stage:Stage II, alive, 1516 days	3.9
TCGA-DD-AADQ-01A	0 years, male, asian, stage:Stage II, alive, 436 days	3.6
TCGA-ES-A2HT-01A	0 years, male, black or african american, stage:Stage I, dead, 438 days	3.6
TCGA-DD-A116-01A	0 years, male, asian, stage:Stage IIIA, dead, 1622 days	3.5
TCGA-DD-A39V-01A	0 years, male, white, stage:Stage II, dead, 643 days	3.5
TCGA-DD-A3A7-01A	0 years, male, stage:Stage IIIB, dead, 419 days	3.5
TCGA-CC-A7IF-01A	0 years, male, asian, stage:Stage IIIA, dead, 649 days	3.4
TCGA-DD-AADF-01A	0 years, female, asian, stage:Stage I, dead, 115 days	3.3
TCGA-ED-A7PY-01A	0 years, female, asian, stage:Stage II, alive, 390 days	3.3
TCGA-WQ-AB4B-01A	0 years, male, white, stage:Stage II, alive, 395 days	3.2
TCGA-G3-A3CJ-01A	0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	3.0
TCGA-FV-A4ZP-01A	0 years, male, white, stage:Stage IIIA, dead, 2486 days	2.9
TCGA-CC-5259-01A	0 years, female, asian, stage:Stage IIIC, alive, 250 days	2.8
TCGA-DD-A39Z-01A	0 years, female, stage:Stage II, dead, 601 days	2.6
TCGA-WX-AA47-01A	0 years, female, white, stage:Stage IIIA, dead, 556 days	2.4
TCGA-DD-AACO-01A	0 years, male, asian, stage:Stage I, alive, 1876 days	2.4
TCGA-DD-AACG-01A	0 years, male, asian, stage:Stage II, dead, 469 days	2.4
TCGA-DD-AADN-01A	0 years, male, asian, stage:Stage I, alive, 898 days	2.3
TCGA-DD-A73G-01A	0 years, female, white, stage:Stage I, alive, 3478 days	2.2
TCGA-DD-A119-01A	0 years, male, asian, stage:Stage IV, dead, 223 days	2.1
TCGA-DD-AAEB-01A	0 years, male, asian, stage:Stage I, alive, 478 days	2.0
TCGA-DD-AACI-01A	0 years, male, asian, stage:Stage II, alive, 1618 days	2.0
TCGA-DD-AAED-01A	0 years, male, asian, stage:Stage I, alive, 763 days	1.9
TCGA-G3-AAV0-01A	0 years, male, asian, stage:Stage I, alive, 476 days	1.9
TCGA-CC-A123-01A	0 years, female, asian, stage:Stage IIIA, alive, 219 days	1.7
TCGA-DD-AAE4-01A	0 years, female, asian, stage:Stage I, alive, 608 days	1.6
TCGA-2Y-A9H1-01A	0 years, male, white, stage:Stage I, dead, 1229 days	1.6
TCGA-DD-AADS-01A	0 years, male, asian, stage:Stage I, alive, 474 days	1.6
TCGA-DD-AADO-01A	0 years, male, asian, stage:Stage I, alive, 453 days	1.6
TCGA-G3-AAUZ-01A	0 years, male, stage:Stage I, alive, 480 days	1.5
TCGA-ES-A2HS-01A	0 years, male, white, stage:Stage I, dead, 688 days	1.3
TCGA-DD-AACD-01A	0 years, male, asian, stage:Stage I, dead, 381 days	1.3
Show allShow less

LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
147	Tumor	0.8
661	Tumor	0.7
715	Tumor	0.7
951	Tumor	0.6
741	Tumor	0.5
724	Normal	0.5
535	Tumor	0.4
283	Tumor	0.4
862	Normal	0.4
211	Tumor	0.4
666	Normal	0.4
978	Normal	0.4
917	Tumor	0.4
536	Normal	0.4
171	Tumor	0.4
664	Normal	0.4
617	Tumor	0.3
863	Tumor	0.3
977	Tumor	0.3
813	Tumor	0.3
713	Tumor	0.3
1042	Normal	0.3
413	Tumor	0.3
867	Tumor	0.3
192	Normal	0.3
697	Tumor	0.3
916	Normal	0.3
445	Tumor	0.3
395	Tumor	0.3
448	Normal	0.3
416	Normal	0.3
716	Normal	0.3
952	Normal	0.3
852	Normal	0.3
444	Normal	0.3
755	Tumor	0.3
1026	Normal	0.3
415	Tumor	0.3
1022	Normal	0.3
268	Normal	0.3
662	Normal	0.3
864	Normal	0.2
924	Normal	0.2
857	Tumor	0.2
433	Tumor	0.2
558	Normal	0.2
858	Normal	0.2
1015	Tumor	0.2
975	Tumor	0.2
1014	Normal	0.2
517	Tumor	0.2
824	Normal	0.2
628	Normal	0.2
212	Normal	0.2
954	Normal	0.2
963	Tumor	0.2
1032	Normal	0.2
557	Tumor	0.2
911	Tumor	0.2
944	Normal	0.2
478	Normal	0.2
818	Normal	0.2
814	Normal	0.2
984	Normal	0.2
672	Normal	0.2
756	Normal	0.2
866	Normal	0.2
922	Normal	0.2
648	Normal	0.2
524	Normal	0.2
938	Normal	0.2
284	Normal	0.2
955	Tumor	0.2
386	Normal	0.2
746	Normal	0.2
723	Tumor	0.2
492	Normal	0.2
778	Normal	0.2
884	Normal	0.2
391	Tumor	0.2
224	Normal	0.2
528	Normal	0.2
514	Normal	0.2
498	Normal	0.2
328	Normal	0.2
188	Normal	0.2
412	Normal	0.2
881	Tumor	0.2
466	Normal	0.2
738	Normal	0.2
698	Normal	0.2
434	Normal	0.2
516	Normal	0.2
861	Tumor	0.2
1045	Tumor	0.2
956	Normal	0.2
518	Normal	0.2
816	Normal	0.2
285	Tumor	0.2
878	Normal	0.2
728	Normal	0.2
364	Normal	0.2
456	Normal	0.2
976	Normal	0.2
447	Tumor	0.1
141	Tumor	0.1
327	Tumor	0.1
685	Tumor	0.1
618	Normal	0.1
882	Normal	0.1
262	Normal	0.1
464	Normal	0.1
874	Normal	0.1
785	Tumor	0.1
387	Tumor	0.1
311	Tumor	0.1
913	Tumor	0.1
228	Normal	0.1
462	Normal	0.1
786	Normal	0.1
912	Normal	0.1
627	Tumor	0.1
126	Normal	0.1
1028	Normal	0.1
727	Tumor	0.1
538	Normal	0.1
227	Tumor	0.1
142	Normal	0.1
146	Normal	0.1
352	Normal	0.1
982	Normal	0.1
1044	Normal	0.1
722	Normal	0.1
342	Normal	0.1
312	Normal	0.1
113	Tumor	0.1
217	Tumor	0.1
481	Tumor	0.1
745	Tumor	0.1
546	Normal	0.1
1041	Tumor	0.1
1016	Normal	0.1
356	Normal	0.1
696	Normal	0.1
472	Normal	0.1
394	Normal	0.1
958	Normal	0.1
744	Normal	0.1
714	Normal	0.1
918	Normal	0.1
851	Tumor	0.1
286	Normal	0.1
914	Normal	0.1
686	Normal	0.1
484	Normal	0.1
455	Tumor	0.1
231	Tumor	0.1
385	Tumor	0.1
1031	Tumor	0.1
966	Normal	0.1
968	Normal	0.1
572	Normal	0.1
261	Tumor	0.1
468	Normal	0.1
267	Tumor	0.1
162	Normal	0.1
1046	Normal	0.1
221	Tumor	0.1
474	Normal	0.1
965	Tumor	0.1
641	Tumor	0.1
926	Normal	0.1
868	Normal	0.1
742	Normal	0.1
138	Normal	0.1
362	Normal	0.1
616	Normal	0.1
222	Normal	0.1
172	Normal	0.1
665	Tumor	0.1
482	Normal	0.1
186	Normal	0.1
136	Normal	0.1
436	Normal	0.1
534	Normal	0.1
1043	Tumor	0.0
298	Normal	0.0
493	Tumor	0.0
527	Tumor	0.0
392	Normal	0.0
721	Tumor	0.0
358	Normal	0.0
191	Tumor	0.0
488	Normal	0.0
574	Normal	0.0
737	Tumor	0.0
214	Normal	0.0
314	Normal	0.0
817	Tumor	0.0
187	Tumor	0.0
494	Normal	0.0
777	Tumor	0.0
124	Normal	0.0
344	Normal	0.0
446	Normal	0.0
964	Normal	0.0
396	Normal	0.0
258	Normal	0.0
432	Normal	0.0
196	Normal	0.0
483	Tumor	0.0
272	Normal	0.0
573	Tumor	0.0
564	Normal	0.0
135	Tumor	0.0
148	Normal	0.0
467	Tumor	0.0
491	Tumor	0.0
568	Normal	0.0
526	Normal	0.0
131	Tumor	0.0
553	Tumor	0.0
642	Normal	0.0
743	Tumor	0.0
554	Normal	0.0
232	Normal	0.0
384	Normal	0.0
132	Normal	0.0
114	Normal	0.0
376	Normal	0.0
921	Tumor	0.0
354	Normal	0.0
271	Tumor	0.0
351	Tumor	0.0
671	Tumor	0.0
424	Normal	0.0
636	Normal	0.0
537	Tumor	0.0
388	Normal	-0.1
145	Tumor	-0.1
943	Tumor	-0.1
218	Normal	-0.1
953	Tumor	-0.1
111	Normal	-0.1
185	Tumor	-0.1
635	Tumor	-0.1
473	Tumor	-0.1
383	Tumor	-0.1
297	Tumor	-0.1
125	Tumor	-0.1
452	Normal	-0.1
428	Normal	-0.1
213	Tumor	-0.1
461	Tumor	-0.1
981	Tumor	-0.1
877	Tumor	-0.1
278	Normal	-0.1
567	Tumor	-0.1
422	Normal	-0.1
353	Tumor	-0.1
1027	Tumor	-0.1
815	Tumor	-0.1
563	Tumor	-0.1
332	Normal	-0.1
1025	Tumor	-0.1
355	Tumor	-0.1
426	Normal	-0.1
331	Tumor	-0.1
823	Tumor	-0.1
223	Tumor	-0.1
471	Tumor	-0.1
414	Normal	-0.1
128	Normal	-0.1
343	Tumor	-0.2
375	Tumor	-0.2
967	Tumor	-0.2
365	Tumor	-0.2
363	Tumor	-0.2
427	Tumor	-0.2
515	Tumor	-0.2
883	Tumor	-0.2
195	Tumor	-0.2
368	Normal	-0.2
435	Tumor	-0.2
451	Tumor	-0.2
525	Tumor	-0.2
366	Normal	-0.2
257	Tumor	-0.2
411	Tumor	-0.2
513	Tumor	-0.2
421	Tumor	-0.3
277	Tumor	-0.3
983	Tumor	-0.3
523	Tumor	-0.3
112	Tumor	-0.3
571	Tumor	-0.3
425	Tumor	-0.3
925	Tumor	-0.3
865	Tumor	-0.3
695	Tumor	-0.3
161	Tumor	-0.3
545	Tumor	-0.3
361	Tumor	-0.3
367	Tumor	-0.3
873	Tumor	-0.4
1013	Tumor	-0.4
915	Tumor	-0.4
497	Tumor	-0.4
477	Tumor	-0.4
463	Tumor	-0.4
127	Tumor	-0.4
137	Tumor	-0.4
393	Tumor	-0.4
923	Tumor	-0.4
663	Tumor	-0.4
487	Tumor	-0.4
957	Tumor	-0.5
1021	Tumor	-0.5
423	Tumor	-0.5
341	Tumor	-0.5
615	Tumor	-0.5
431	Tumor	-0.6
443	Tumor	-0.6
313	Tumor	-0.6
647	Tumor	-0.6
465	Tumor	-0.6
937	Tumor	-0.7
123	Tumor	-0.7
357	Tumor	-0.8
533	Tumor	-0.9
Show allShow less

LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA041802	Antibody HPA054532
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS