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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPN11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
56.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
56.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
44.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
41.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
40.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
33.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
25.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPN11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.0
Number of samples
231
Samples
Sample
Description
TPM
DO50832
0 years, male, NA, stage:3, alive, 90 days
84.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
62.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
59.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
55.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
52.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
785
Tumor
0.8
957
Tumor
0.8
635
Tumor
0.7
777
Tumor
0.7
615
Tumor
0.6
755
Tumor
0.6
257
Tumor
0.5
981
Tumor
0.5
523
Tumor
0.5
465
Tumor
0.5
921
Tumor
0.5
425
Tumor
0.4
461
Tumor
0.4
647
Tumor
0.4
952
Normal
0.4
1045
Tumor
0.4
131
Tumor
0.4
515
Tumor
0.4
365
Tumor
0.3
127
Tumor
0.3
513
Tumor
0.3
1043
Tumor
0.3
487
Tumor
0.3
137
Tumor
0.3
685
Tumor
0.3
455
Tumor
0.3
393
Tumor
0.3
955
Tumor
0.3
141
Tumor
0.3
341
Tumor
0.3
484
Normal
0.3
746
Normal
0.3
916
Normal
0.3
874
Normal
0.3
1028
Normal
0.3
545
Tumor
0.3
481
Tumor
0.3
563
Tumor
0.3
728
Normal
0.3
1025
Tumor
0.2
741
Tumor
0.2
918
Normal
0.2
1022
Normal
0.2
745
Tumor
0.2
756
Normal
0.2
448
Normal
0.2
261
Tumor
0.2
145
Tumor
0.2
924
Normal
0.2
474
Normal
0.2
518
Normal
0.2
268
Normal
0.2
852
Normal
0.2
715
Tumor
0.2
616
Normal
0.2
868
Normal
0.2
436
Normal
0.2
416
Normal
0.2
128
Normal
0.2
553
Tumor
0.2
546
Normal
0.2
538
Normal
0.2
492
Normal
0.2
362
Normal
0.2
351
Tumor
0.2
528
Normal
0.2
1042
Normal
0.2
328
Normal
0.2
1013
Tumor
0.2
423
Tumor
0.2
956
Normal
0.2
851
Tumor
0.2
627
Tumor
0.2
937
Tumor
0.2
498
Normal
0.2
472
Normal
0.2
136
Normal
0.2
714
Normal
0.1
412
Normal
0.1
361
Tumor
0.1
297
Tumor
0.1
536
Normal
0.1
132
Normal
0.1
648
Normal
0.1
1032
Normal
0.1
414
Normal
0.1
478
Normal
0.1
284
Normal
0.1
356
Normal
0.1
786
Normal
0.1
738
Normal
0.1
327
Tumor
0.1
462
Normal
0.1
958
Normal
0.1
944
Normal
0.1
864
Normal
0.1
222
Normal
0.1
483
Tumor
0.1
564
Normal
0.1
367
Tumor
0.1
533
Tumor
0.1
558
Normal
0.1
778
Normal
0.1
953
Tumor
0.1
665
Tumor
0.1
1026
Normal
0.1
228
Normal
0.1
967
Tumor
0.1
954
Normal
0.1
915
Tumor
0.1
126
Normal
0.1
723
Tumor
0.1
422
Normal
0.1
426
Normal
0.1
816
Normal
0.1
447
Tumor
0.1
922
Normal
0.1
866
Normal
0.1
466
Normal
0.1
135
Tumor
0.1
867
Tumor
0.1
534
Normal
0.1
262
Normal
0.1
232
Normal
0.1
366
Normal
0.1
966
Normal
0.1
722
Normal
0.1
618
Normal
0.1
212
Normal
0.1
272
Normal
0.1
926
Normal
0.1
358
Normal
0.1
742
Normal
0.1
716
Normal
0.1
185
Tumor
0.1
968
Normal
0.1
147
Tumor
0.1
195
Tumor
0.1
187
Tumor
0.1
862
Normal
0.1
424
Normal
0.1
494
Normal
0.1
286
Normal
0.1
432
Normal
0.1
662
Normal
0.1
514
Normal
0.1
642
Normal
0.1
911
Tumor
0.1
421
Tumor
0.1
386
Normal
0.1
943
Tumor
0.1
671
Tumor
0.1
125
Tumor
0.1
192
Normal
0.1
878
Normal
0.1
554
Normal
0.1
148
Normal
0.1
138
Normal
0.1
824
Normal
0.1
111
Normal
0.1
477
Tumor
0.1
516
Normal
0.1
443
Tumor
0.0
1016
Normal
0.0
445
Tumor
0.0
258
Normal
0.0
698
Normal
0.0
572
Normal
0.0
976
Normal
0.0
394
Normal
0.0
452
Normal
0.0
982
Normal
0.0
482
Normal
0.0
368
Normal
0.0
188
Normal
0.0
873
Tumor
0.0
468
Normal
0.0
696
Normal
0.0
444
Normal
0.0
428
Normal
0.0
464
Normal
0.0
978
Normal
0.0
312
Normal
0.0
535
Tumor
0.0
628
Normal
0.0
913
Tumor
0.0
1041
Tumor
0.0
858
Normal
0.0
124
Normal
0.0
456
Normal
0.0
278
Normal
0.0
938
Normal
0.0
1014
Normal
0.0
1046
Normal
0.0
526
Normal
0.0
1044
Normal
0.0
914
Normal
0.0
574
Normal
0.0
364
Normal
0.0
123
Tumor
0.0
882
Normal
0.0
344
Normal
0.0
376
Normal
0.0
363
Tumor
0.0
666
Normal
0.0
354
Normal
0.0
884
Normal
0.0
218
Normal
0.0
224
Normal
0.0
415
Tumor
0.0
664
Normal
0.0
396
Normal
0.0
342
Normal
0.0
392
Normal
0.0
1015
Tumor
0.0
375
Tumor
0.0
172
Normal
0.0
413
Tumor
0.0
964
Normal
0.0
114
Normal
0.0
524
Normal
0.0
925
Tumor
0.0
488
Normal
0.0
298
Normal
0.0
435
Tumor
0.0
395
Tumor
0.0
196
Normal
0.0
473
Tumor
0.0
557
Tumor
0.0
231
Tumor
0.0
112
Tumor
0.0
686
Normal
0.0
617
Tumor
0.0
142
Normal
0.0
214
Normal
0.0
353
Tumor
0.0
388
Normal
0.0
568
Normal
0.0
527
Tumor
0.0
283
Tumor
-0.1
384
Normal
-0.1
912
Normal
-0.1
355
Tumor
-0.1
434
Normal
-0.1
162
Normal
-0.1
977
Tumor
-0.1
984
Normal
-0.1
146
Normal
-0.1
463
Tumor
-0.1
431
Tumor
-0.1
861
Tumor
-0.1
818
Normal
-0.1
433
Tumor
-0.1
285
Tumor
-0.1
815
Tumor
-0.1
314
Normal
-0.1
385
Tumor
-0.1
743
Tumor
-0.1
446
Normal
-0.1
332
Normal
-0.1
186
Normal
-0.1
823
Tumor
-0.1
411
Tumor
-0.1
721
Tumor
-0.1
517
Tumor
-0.1
744
Normal
-0.1
975
Tumor
-0.1
352
Normal
-0.1
571
Tumor
-0.1
113
Tumor
-0.1
877
Tumor
-0.1
537
Tumor
-0.1
567
Tumor
-0.1
965
Tumor
-0.1
636
Normal
-0.1
923
Tumor
-0.1
161
Tumor
-0.1
191
Tumor
-0.1
917
Tumor
-0.1
387
Tumor
-0.2
217
Tumor
-0.2
1031
Tumor
-0.2
343
Tumor
-0.2
661
Tumor
-0.2
573
Tumor
-0.2
672
Normal
-0.2
331
Tumor
-0.2
881
Tumor
-0.2
983
Tumor
-0.2
471
Tumor
-0.2
211
Tumor
-0.2
451
Tumor
-0.2
313
Tumor
-0.2
814
Normal
-0.2
695
Tumor
-0.2
277
Tumor
-0.2
1021
Tumor
-0.2
267
Tumor
-0.2
713
Tumor
-0.2
271
Tumor
-0.2
493
Tumor
-0.2
491
Tumor
-0.3
357
Tumor
-0.3
857
Tumor
-0.3
221
Tumor
-0.3
883
Tumor
-0.3
497
Tumor
-0.3
737
Tumor
-0.3
951
Tumor
-0.3
223
Tumor
-0.3
467
Tumor
-0.3
213
Tumor
-0.3
727
Tumor
-0.4
663
Tumor
-0.4
1027
Tumor
-0.4
391
Tumor
-0.4
863
Tumor
-0.4
641
Tumor
-0.4
383
Tumor
-0.4
817
Tumor
-0.4
963
Tumor
-0.4
311
Tumor
-0.4
865
Tumor
-0.5
427
Tumor
-0.5
813
Tumor
-0.5
525
Tumor
-0.6
227
Tumor
-0.6
697
Tumor
-0.6
171
Tumor
-0.6
724
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
