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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAMD4B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
145.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
63.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
58.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
55.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
49.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
48.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
42.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
34.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAMD4B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
43.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
1.7
487
Tumor
1.5
425
Tumor
1.2
443
Tumor
0.9
231
Tumor
0.9
671
Tumor
0.8
567
Tumor
0.8
341
Tumor
0.8
661
Tumor
0.8
385
Tumor
0.7
257
Tumor
0.7
125
Tumor
0.7
573
Tumor
0.6
123
Tumor
0.6
635
Tumor
0.6
641
Tumor
0.6
813
Tumor
0.6
285
Tumor
0.6
283
Tumor
0.5
297
Tumor
0.5
395
Tumor
0.5
431
Tumor
0.5
343
Tumor
0.4
445
Tumor
0.4
141
Tumor
0.4
627
Tumor
0.4
351
Tumor
0.4
433
Tumor
0.4
277
Tumor
0.4
393
Tumor
0.4
743
Tumor
0.4
483
Tumor
0.4
427
Tumor
0.4
171
Tumor
0.3
814
Normal
0.3
571
Tumor
0.3
161
Tumor
0.3
391
Tumor
0.3
112
Tumor
0.3
331
Tumor
0.3
741
Tumor
0.3
267
Tumor
0.3
967
Tumor
0.3
421
Tumor
0.3
455
Tumor
0.3
465
Tumor
0.3
568
Normal
0.3
261
Tumor
0.3
497
Tumor
0.3
383
Tumor
0.3
965
Tumor
0.3
881
Tumor
0.3
127
Tumor
0.3
147
Tumor
0.3
387
Tumor
0.3
185
Tumor
0.3
213
Tumor
0.3
461
Tumor
0.3
375
Tumor
0.2
137
Tumor
0.2
271
Tumor
0.2
311
Tumor
0.2
145
Tumor
0.2
745
Tumor
0.2
557
Tumor
0.2
715
Tumor
0.2
647
Tumor
0.2
913
Tumor
0.2
365
Tumor
0.2
563
Tumor
0.2
357
Tumor
0.2
917
Tumor
0.2
574
Normal
0.2
865
Tumor
0.2
615
Tumor
0.1
983
Tumor
0.1
642
Normal
0.1
517
Tumor
0.1
1027
Tumor
0.1
737
Tumor
0.1
564
Normal
0.1
491
Tumor
0.1
186
Normal
0.1
187
Tumor
0.1
977
Tumor
0.1
911
Tumor
0.1
744
Normal
0.1
444
Normal
0.1
124
Normal
0.1
392
Normal
0.1
663
Tumor
0.1
815
Tumor
0.1
618
Normal
0.1
493
Tumor
0.1
146
Normal
0.1
396
Normal
0.1
665
Tumor
0.1
367
Tumor
0.1
132
Normal
0.1
327
Tumor
0.1
1015
Tumor
0.1
777
Tumor
0.1
451
Tumor
0.1
278
Normal
0.1
114
Normal
0.1
138
Normal
0.1
724
Normal
0.1
672
Normal
0.1
545
Tumor
0.1
113
Tumor
0.1
411
Tumor
0.1
873
Tumor
0.1
221
Tumor
0.1
823
Tumor
0.0
148
Normal
0.0
136
Normal
0.0
498
Normal
0.0
314
Normal
0.0
975
Tumor
0.0
298
Normal
0.0
188
Normal
0.0
332
Normal
0.0
223
Tumor
0.0
268
Normal
0.0
376
Normal
0.0
135
Tumor
0.0
344
Normal
0.0
883
Tumor
0.0
272
Normal
0.0
313
Tumor
0.0
368
Normal
0.0
362
Normal
0.0
867
Tumor
0.0
232
Normal
0.0
572
Normal
0.0
353
Tumor
0.0
384
Normal
0.0
456
Normal
0.0
851
Tumor
0.0
361
Tumor
0.0
546
Normal
0.0
111
Normal
0.0
435
Tumor
0.0
386
Normal
0.0
447
Tumor
0.0
128
Normal
0.0
468
Normal
0.0
636
Normal
0.0
312
Normal
-0.1
943
Tumor
-0.1
162
Normal
-0.1
363
Tumor
-0.1
126
Normal
-0.1
662
Normal
-0.1
1021
Tumor
-0.1
617
Tumor
-0.1
968
Normal
-0.1
534
Normal
-0.1
628
Normal
-0.1
262
Normal
-0.1
191
Tumor
-0.1
413
Tumor
-0.1
352
Normal
-0.1
217
Tumor
-0.1
857
Tumor
-0.1
192
Normal
-0.1
817
Tumor
-0.1
923
Tumor
-0.1
434
Normal
-0.1
436
Normal
-0.1
742
Normal
-0.1
258
Normal
-0.1
528
Normal
-0.1
478
Normal
-0.1
533
Tumor
-0.1
816
Normal
-0.1
286
Normal
-0.1
963
Tumor
-0.1
131
Tumor
-0.1
481
Tumor
-0.1
1016
Normal
-0.1
366
Normal
-0.1
394
Normal
-0.1
1043
Tumor
-0.2
452
Normal
-0.2
464
Normal
-0.2
877
Tumor
-0.2
172
Normal
-0.2
195
Tumor
-0.2
666
Normal
-0.2
863
Tumor
-0.2
482
Normal
-0.2
218
Normal
-0.2
616
Normal
-0.2
515
Tumor
-0.2
467
Tumor
-0.2
976
Normal
-0.2
664
Normal
-0.2
1045
Tumor
-0.2
527
Tumor
-0.2
492
Normal
-0.2
214
Normal
-0.2
516
Normal
-0.2
477
Tumor
-0.2
1041
Tumor
-0.2
818
Normal
-0.2
388
Normal
-0.2
224
Normal
-0.2
473
Tumor
-0.2
921
Tumor
-0.2
524
Normal
-0.2
861
Tumor
-0.2
648
Normal
-0.2
558
Normal
-0.2
472
Normal
-0.2
466
Normal
-0.2
423
Tumor
-0.2
354
Normal
-0.2
462
Normal
-0.2
915
Tumor
-0.2
824
Normal
-0.2
228
Normal
-0.2
222
Normal
-0.2
713
Tumor
-0.2
878
Normal
-0.2
981
Tumor
-0.2
738
Normal
-0.3
866
Normal
-0.3
342
Normal
-0.3
984
Normal
-0.3
526
Normal
-0.3
914
Normal
-0.3
982
Normal
-0.3
874
Normal
-0.3
358
Normal
-0.3
432
Normal
-0.3
1028
Normal
-0.3
721
Tumor
-0.3
957
Tumor
-0.3
1025
Tumor
-0.3
494
Normal
-0.3
211
Tumor
-0.3
1031
Tumor
-0.3
196
Normal
-0.3
554
Normal
-0.3
852
Normal
-0.3
488
Normal
-0.3
698
Normal
-0.3
695
Tumor
-0.3
446
Normal
-0.3
727
Tumor
-0.3
142
Normal
-0.3
864
Normal
-0.3
697
Tumor
-0.3
964
Normal
-0.3
1014
Normal
-0.4
356
Normal
-0.4
426
Normal
-0.4
858
Normal
-0.4
786
Normal
-0.4
937
Tumor
-0.4
284
Normal
-0.4
484
Normal
-0.4
518
Normal
-0.4
924
Normal
-0.4
918
Normal
-0.4
227
Tumor
-0.4
474
Normal
-0.4
916
Normal
-0.4
422
Normal
-0.4
514
Normal
-0.4
722
Normal
-0.4
944
Normal
-0.4
922
Normal
-0.4
513
Tumor
-0.4
685
Tumor
-0.4
1022
Normal
-0.4
955
Tumor
-0.4
925
Tumor
-0.4
355
Tumor
-0.4
953
Tumor
-0.4
1013
Tumor
-0.4
553
Tumor
-0.4
1032
Normal
-0.4
958
Normal
-0.4
862
Normal
-0.4
523
Tumor
-0.4
448
Normal
-0.5
471
Tumor
-0.5
1026
Normal
-0.5
428
Normal
-0.5
868
Normal
-0.5
538
Normal
-0.5
966
Normal
-0.5
728
Normal
-0.5
978
Normal
-0.5
416
Normal
-0.5
1046
Normal
-0.5
412
Normal
-0.5
723
Tumor
-0.5
926
Normal
-0.5
952
Normal
-0.5
778
Normal
-0.5
785
Tumor
-0.5
414
Normal
-0.5
938
Normal
-0.5
951
Tumor
-0.5
954
Normal
-0.5
212
Normal
-0.6
1044
Normal
-0.6
756
Normal
-0.6
696
Normal
-0.6
882
Normal
-0.6
714
Normal
-0.6
1042
Normal
-0.6
746
Normal
-0.6
536
Normal
-0.6
525
Tumor
-0.6
424
Normal
-0.6
537
Tumor
-0.6
716
Normal
-0.6
956
Normal
-0.6
535
Tumor
-0.6
364
Normal
-0.7
686
Normal
-0.7
415
Tumor
-0.7
328
Normal
-0.8
755
Tumor
-0.8
884
Normal
-0.8
912
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
