We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
P4HTM is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
54.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
34.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
P4HTM is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
393
Tumor
1.6
921
Tumor
1.3
865
Tumor
1.3
1043
Tumor
1.3
953
Tumor
1.3
285
Tumor
0.9
863
Tumor
0.9
423
Tumor
0.8
161
Tumor
0.8
1025
Tumor
0.8
727
Tumor
0.7
741
Tumor
0.7
481
Tumor
0.6
395
Tumor
0.6
471
Tumor
0.6
1031
Tumor
0.6
411
Tumor
0.6
553
Tumor
0.6
131
Tumor
0.6
877
Tumor
0.6
916
Normal
0.6
698
Normal
0.6
951
Tumor
0.6
124
Normal
0.6
527
Tumor
0.6
1046
Normal
0.6
954
Normal
0.5
923
Tumor
0.5
445
Tumor
0.5
647
Tumor
0.5
737
Tumor
0.5
497
Tumor
0.5
981
Tumor
0.5
663
Tumor
0.5
955
Tumor
0.5
571
Tumor
0.5
271
Tumor
0.5
881
Tumor
0.5
957
Tumor
0.5
924
Normal
0.5
387
Tumor
0.5
813
Tumor
0.5
615
Tumor
0.5
616
Normal
0.5
536
Normal
0.5
785
Tumor
0.4
538
Normal
0.4
433
Tumor
0.4
355
Tumor
0.4
815
Tumor
0.4
1044
Normal
0.4
572
Normal
0.4
742
Normal
0.4
413
Tumor
0.4
357
Tumor
0.4
746
Normal
0.4
926
Normal
0.4
738
Normal
0.4
917
Tumor
0.4
862
Normal
0.4
452
Normal
0.4
137
Tumor
0.4
938
Normal
0.4
568
Normal
0.4
467
Tumor
0.4
554
Normal
0.4
342
Normal
0.3
636
Normal
0.3
977
Tumor
0.3
564
Normal
0.3
913
Tumor
0.3
884
Normal
0.3
456
Normal
0.3
627
Tumor
0.3
482
Normal
0.3
922
Normal
0.3
268
Normal
0.3
464
Normal
0.3
468
Normal
0.3
958
Normal
0.3
492
Normal
0.3
723
Tumor
0.3
965
Tumor
0.3
534
Normal
0.3
524
Normal
0.3
286
Normal
0.3
376
Normal
0.3
416
Normal
0.3
743
Tumor
0.3
874
Normal
0.3
528
Normal
0.3
414
Normal
0.3
365
Tumor
0.3
258
Normal
0.3
498
Normal
0.3
878
Normal
0.3
882
Normal
0.3
618
Normal
0.3
447
Tumor
0.2
861
Tumor
0.2
111
Normal
0.2
982
Normal
0.2
648
Normal
0.2
1045
Tumor
0.2
777
Tumor
0.2
344
Normal
0.2
128
Normal
0.2
392
Normal
0.2
358
Normal
0.2
354
Normal
0.2
114
Normal
0.2
1026
Normal
0.2
428
Normal
0.2
462
Normal
0.2
341
Tumor
0.2
483
Tumor
0.2
125
Tumor
0.2
284
Normal
0.2
695
Tumor
0.2
465
Tumor
0.2
478
Normal
0.2
868
Normal
0.2
918
Normal
0.2
261
Tumor
0.2
364
Normal
0.2
697
Tumor
0.2
526
Normal
0.2
142
Normal
0.2
472
Normal
0.2
262
Normal
0.2
866
Normal
0.2
975
Tumor
0.2
368
Normal
0.2
952
Normal
0.2
883
Tumor
0.2
384
Normal
0.2
221
Tumor
0.2
228
Normal
0.2
422
Normal
0.2
186
Normal
0.2
187
Tumor
0.2
232
Normal
0.1
138
Normal
0.1
966
Normal
0.1
852
Normal
0.1
546
Normal
0.1
444
Normal
0.1
388
Normal
0.1
864
Normal
0.1
858
Normal
0.1
1014
Normal
0.1
148
Normal
0.1
978
Normal
0.1
983
Tumor
0.1
662
Normal
0.1
126
Normal
0.1
558
Normal
0.1
477
Tumor
0.1
162
Normal
0.1
432
Normal
0.1
666
Normal
0.1
968
Normal
0.1
448
Normal
0.1
514
Normal
0.1
914
Normal
0.1
112
Tumor
0.1
488
Normal
0.1
824
Normal
0.1
642
Normal
0.1
185
Tumor
0.1
443
Tumor
0.1
487
Tumor
0.1
272
Normal
0.1
461
Tumor
0.1
484
Normal
0.1
641
Tumor
0.1
744
Normal
0.1
574
Normal
0.1
778
Normal
0.1
912
Normal
0.1
1028
Normal
0.1
1042
Normal
0.1
545
Tumor
0.1
343
Tumor
0.1
366
Normal
0.1
722
Normal
0.1
426
Normal
0.1
956
Normal
0.1
362
Normal
0.1
394
Normal
0.1
1021
Tumor
0.1
136
Normal
0.1
685
Tumor
0.1
386
Normal
0.1
817
Tumor
0.1
1015
Tumor
0.1
412
Normal
0.1
434
Normal
0.1
728
Normal
0.1
628
Normal
0.1
436
Normal
0.0
786
Normal
0.0
383
Tumor
0.0
132
Normal
0.0
686
Normal
0.0
984
Normal
0.0
352
Normal
0.0
446
Normal
0.0
1016
Normal
0.0
257
Tumor
0.0
494
Normal
0.0
814
Normal
0.0
1022
Normal
0.0
818
Normal
0.0
964
Normal
0.0
816
Normal
0.0
298
Normal
0.0
451
Tumor
0.0
664
Normal
0.0
672
Normal
0.0
535
Tumor
0.0
533
Tumor
0.0
516
Normal
0.0
353
Tumor
0.0
188
Normal
0.0
756
Normal
0.0
455
Tumor
0.0
491
Tumor
0.0
857
Tumor
0.0
714
Normal
0.0
356
Normal
0.0
944
Normal
0.0
331
Tumor
0.0
463
Tumor
0.0
1041
Tumor
0.0
424
Normal
0.0
696
Normal
0.0
716
Normal
0.0
146
Normal
0.0
943
Tumor
0.0
567
Tumor
0.0
172
Normal
0.0
721
Tumor
-0.1
515
Tumor
-0.1
127
Tumor
-0.1
192
Normal
-0.1
967
Tumor
-0.1
396
Normal
-0.1
518
Normal
-0.1
218
Normal
-0.1
421
Tumor
-0.1
466
Normal
-0.1
1032
Normal
-0.1
217
Tumor
-0.1
328
Normal
-0.1
563
Tumor
-0.1
415
Tumor
-0.1
314
Normal
-0.1
212
Normal
-0.1
113
Tumor
-0.1
976
Normal
-0.1
1013
Tumor
-0.1
755
Tumor
-0.1
391
Tumor
-0.2
523
Tumor
-0.2
851
Tumor
-0.2
224
Normal
-0.2
925
Tumor
-0.2
283
Tumor
-0.2
196
Normal
-0.2
425
Tumor
-0.2
517
Tumor
-0.2
135
Tumor
-0.2
213
Tumor
-0.2
214
Normal
-0.2
311
Tumor
-0.2
191
Tumor
-0.2
385
Tumor
-0.2
911
Tumor
-0.2
661
Tumor
-0.2
312
Normal
-0.2
715
Tumor
-0.2
474
Normal
-0.2
195
Tumor
-0.2
573
Tumor
-0.3
145
Tumor
-0.3
513
Tumor
-0.3
617
Tumor
-0.3
713
Tumor
-0.3
557
Tumor
-0.3
525
Tumor
-0.3
537
Tumor
-0.3
222
Normal
-0.3
171
Tumor
-0.3
361
Tumor
-0.4
227
Tumor
-0.4
427
Tumor
-0.4
123
Tumor
-0.4
635
Tumor
-0.4
823
Tumor
-0.4
278
Normal
-0.5
963
Tumor
-0.5
351
Tumor
-0.5
873
Tumor
-0.6
431
Tumor
-0.6
375
Tumor
-0.6
267
Tumor
-0.6
231
Tumor
-0.6
473
Tumor
-0.7
671
Tumor
-0.7
665
Tumor
-0.7
277
Tumor
-0.7
435
Tumor
-0.7
724
Normal
-0.7
332
Normal
-0.7
297
Tumor
-0.7
363
Tumor
-0.8
915
Tumor
-0.8
223
Tumor
-0.8
141
Tumor
-0.8
327
Tumor
-0.9
367
Tumor
-0.9
493
Tumor
-1.0
745
Tumor
-1.0
1027
Tumor
-1.0
211
Tumor
-1.1
937
Tumor
-1.1
147
Tumor
-1.1
313
Tumor
-1.1
867
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
