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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR6 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
112.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
106.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
104.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
101.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
96.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
80.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
80.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
80.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
79.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
78.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
76.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
74.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
74.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
70.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
70.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
69.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
68.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
68.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
64.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
62.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
62.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
62.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
61.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
61.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
60.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
60.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
59.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
58.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
56.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
55.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
55.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
55.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
54.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
54.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
54.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
53.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
52.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
52.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
51.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
51.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
50.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
50.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
48.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
48.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
48.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
48.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
47.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
47.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
47.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
47.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
47.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
46.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
45.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
45.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
44.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
42.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
42.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
41.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
40.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
40.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
40.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
39.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
38.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
37.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
36.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
35.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
33.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
31.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
26.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.6
Number of samples
231
Samples
Sample
Description
TPM
DO23546
0 years, male, NA, stage:2, alive, 1050 days
142.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
112.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
112.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
110.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
101.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
100.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
91.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
91.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
87.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
84.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
78.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
76.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
75.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
72.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
71.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
70.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
68.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
67.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
65.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
64.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
61.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
60.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
60.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
59.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
59.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
58.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
54.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
53.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
52.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
52.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
52.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
49.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
48.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
48.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
48.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
47.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
44.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
41.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
40.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
40.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
39.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
851
Tumor
0.6
393
Tumor
0.6
113
Tumor
0.6
428
Normal
0.5
464
Normal
0.5
145
Tumor
0.5
422
Normal
0.5
953
Tumor
0.4
375
Tumor
0.4
395
Tumor
0.4
112
Tumor
0.4
436
Normal
0.4
114
Normal
0.4
332
Normal
0.4
636
Normal
0.4
161
Tumor
0.4
616
Normal
0.4
468
Normal
0.4
357
Tumor
0.4
128
Normal
0.4
642
Normal
0.4
426
Normal
0.4
815
Tumor
0.4
618
Normal
0.4
943
Tumor
0.4
298
Normal
0.4
257
Tumor
0.3
394
Normal
0.3
137
Tumor
0.3
482
Normal
0.3
111
Normal
0.3
314
Normal
0.3
392
Normal
0.3
452
Normal
0.3
123
Tumor
0.3
858
Normal
0.3
125
Tumor
0.3
396
Normal
0.3
162
Normal
0.3
937
Tumor
0.3
368
Normal
0.3
278
Normal
0.3
628
Normal
0.3
186
Normal
0.3
218
Normal
0.3
172
Normal
0.3
126
Normal
0.3
955
Tumor
0.3
222
Normal
0.3
365
Tumor
0.3
195
Tumor
0.3
526
Normal
0.3
391
Tumor
0.3
424
Normal
0.3
376
Normal
0.3
446
Normal
0.3
568
Normal
0.3
957
Tumor
0.3
312
Normal
0.3
824
Normal
0.2
617
Tumor
0.2
627
Tumor
0.2
912
Normal
0.2
124
Normal
0.2
914
Normal
0.2
188
Normal
0.2
666
Normal
0.2
148
Normal
0.2
574
Normal
0.2
272
Normal
0.2
342
Normal
0.2
221
Tumor
0.2
217
Tumor
0.2
663
Tumor
0.2
388
Normal
0.2
662
Normal
0.2
268
Normal
0.2
423
Tumor
0.2
386
Normal
0.2
465
Tumor
0.2
672
Normal
0.2
1016
Normal
0.2
467
Tumor
0.2
191
Tumor
0.2
648
Normal
0.2
514
Normal
0.2
286
Normal
0.2
698
Normal
0.2
1028
Normal
0.2
331
Tumor
0.2
564
Normal
0.2
982
Normal
0.2
366
Normal
0.2
196
Normal
0.2
572
Normal
0.2
136
Normal
0.2
421
Tumor
0.2
463
Tumor
0.2
358
Normal
0.1
487
Tumor
0.1
362
Normal
0.1
456
Normal
0.1
351
Tumor
0.1
554
Normal
0.1
192
Normal
0.1
695
Tumor
0.1
466
Normal
0.1
434
Normal
0.1
131
Tumor
0.1
214
Normal
0.1
746
Normal
0.1
277
Tumor
0.1
132
Normal
0.1
385
Tumor
0.1
882
Normal
0.1
414
Normal
0.1
523
Tumor
0.1
1025
Tumor
0.1
965
Tumor
0.1
187
Tumor
0.1
384
Normal
0.1
664
Normal
0.1
411
Tumor
0.1
361
Tumor
0.1
884
Normal
0.1
862
Normal
0.1
818
Normal
0.1
261
Tumor
0.1
138
Normal
0.1
258
Normal
0.1
353
Tumor
0.1
473
Tumor
0.1
432
Normal
0.1
816
Normal
0.1
262
Normal
0.1
228
Normal
0.1
232
Normal
0.1
448
Normal
0.1
474
Normal
0.1
861
Tumor
0.1
462
Normal
0.1
877
Tumor
0.1
571
Tumor
0.0
416
Normal
0.0
213
Tumor
0.0
1014
Normal
0.0
728
Normal
0.0
472
Normal
0.0
1042
Normal
0.0
444
Normal
0.0
413
Tumor
0.0
343
Tumor
0.0
364
Normal
0.0
546
Normal
0.0
344
Normal
0.0
327
Tumor
0.0
923
Tumor
0.0
671
Tumor
0.0
267
Tumor
0.0
938
Normal
0.0
926
Normal
0.0
722
Normal
0.0
352
Normal
0.0
488
Normal
0.0
528
Normal
0.0
185
Tumor
0.0
127
Tumor
0.0
786
Normal
0.0
921
Tumor
0.0
1032
Normal
0.0
714
Normal
0.0
1022
Normal
0.0
721
Tumor
0.0
918
Normal
0.0
865
Tumor
0.0
481
Tumor
0.0
537
Tumor
0.0
224
Normal
0.0
852
Normal
0.0
573
Tumor
0.0
737
Tumor
0.0
433
Tumor
0.0
978
Normal
0.0
141
Tumor
0.0
755
Tumor
0.0
557
Tumor
0.0
1041
Tumor
0.0
146
Normal
0.0
713
Tumor
0.0
451
Tumor
0.0
686
Normal
0.0
227
Tumor
0.0
641
Tumor
0.0
484
Normal
0.0
966
Normal
0.0
271
Tumor
0.0
516
Normal
0.0
356
Normal
0.0
665
Tumor
0.0
968
Normal
0.0
1013
Tumor
0.0
285
Tumor
0.0
387
Tumor
0.0
367
Tumor
0.0
545
Tumor
0.0
147
Tumor
0.0
284
Normal
0.0
518
Normal
0.0
142
Normal
0.0
983
Tumor
0.0
916
Normal
0.0
412
Normal
0.0
952
Normal
0.0
742
Normal
0.0
533
Tumor
-0.1
874
Normal
-0.1
857
Tumor
-0.1
491
Tumor
-0.1
723
Tumor
-0.1
558
Normal
-0.1
924
Normal
-0.1
823
Tumor
-0.1
647
Tumor
-0.1
313
Tumor
-0.1
492
Normal
-0.1
223
Tumor
-0.1
777
Tumor
-0.1
311
Tumor
-0.1
864
Normal
-0.1
738
Normal
-0.1
478
Normal
-0.1
778
Normal
-0.1
981
Tumor
-0.1
524
Normal
-0.1
477
Tumor
-0.1
328
Normal
-0.1
1026
Normal
-0.1
538
Normal
-0.1
427
Tumor
-0.1
615
Tumor
-0.1
567
Tumor
-0.1
881
Tumor
-0.1
661
Tumor
-0.1
498
Normal
-0.1
494
Normal
-0.1
171
Tumor
-0.1
716
Normal
-0.1
878
Normal
-0.1
817
Tumor
-0.1
212
Normal
-0.1
341
Tumor
-0.1
984
Normal
-0.1
534
Normal
-0.1
715
Tumor
-0.1
956
Normal
-0.1
756
Normal
-0.1
431
Tumor
-0.1
354
Normal
-0.1
1046
Normal
-0.1
1043
Tumor
-0.1
883
Tumor
-0.1
917
Tumor
-0.1
231
Tumor
-0.2
866
Normal
-0.2
727
Tumor
-0.2
443
Tumor
-0.2
536
Normal
-0.2
745
Tumor
-0.2
744
Normal
-0.2
813
Tumor
-0.2
958
Normal
-0.2
868
Normal
-0.2
135
Tumor
-0.2
915
Tumor
-0.2
696
Normal
-0.2
383
Tumor
-0.2
513
Tumor
-0.2
964
Normal
-0.2
944
Normal
-0.2
913
Tumor
-0.2
445
Tumor
-0.2
724
Normal
-0.2
954
Normal
-0.2
741
Tumor
-0.2
461
Tumor
-0.2
922
Normal
-0.2
455
Tumor
-0.2
1015
Tumor
-0.2
297
Tumor
-0.2
525
Tumor
-0.2
435
Tumor
-0.2
517
Tumor
-0.3
425
Tumor
-0.3
976
Normal
-0.3
814
Normal
-0.3
497
Tumor
-0.3
363
Tumor
-0.3
355
Tumor
-0.3
563
Tumor
-0.3
911
Tumor
-0.3
685
Tumor
-0.3
697
Tumor
-0.3
867
Tumor
-0.3
863
Tumor
-0.3
951
Tumor
-0.3
977
Tumor
-0.4
515
Tumor
-0.4
1044
Normal
-0.4
471
Tumor
-0.4
553
Tumor
-0.4
535
Tumor
-0.4
1045
Tumor
-0.4
785
Tumor
-0.4
527
Tumor
-0.4
975
Tumor
-0.4
963
Tumor
-0.4
925
Tumor
-0.4
415
Tumor
-0.5
283
Tumor
-0.5
211
Tumor
-0.5
635
Tumor
-0.5
873
Tumor
-0.5
1031
Tumor
-0.5
1027
Tumor
-0.5
743
Tumor
-0.5
493
Tumor
-0.5
447
Tumor
-0.5
967
Tumor
-0.6
483
Tumor
-0.6
1021
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
