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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BOLA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
73.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
68.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
62.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
55.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
50.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
49.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
47.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
30.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
24.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BOLA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
231
Samples
Sample
Description
TPM
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
62.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
51.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
46.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
46.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
44.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
36.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
35.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
35.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.2
685
Tumor
1.1
357
Tumor
0.9
533
Tumor
0.8
953
Tumor
0.7
435
Tumor
0.6
663
Tumor
0.6
463
Tumor
0.6
451
Tumor
0.6
161
Tumor
0.6
915
Tumor
0.5
714
Normal
0.5
393
Tumor
0.5
477
Tumor
0.5
513
Tumor
0.5
481
Tumor
0.5
1027
Tumor
0.5
715
Tumor
0.5
487
Tumor
0.4
1041
Tumor
0.4
391
Tumor
0.4
123
Tumor
0.4
957
Tumor
0.4
713
Tumor
0.4
745
Tumor
0.3
327
Tumor
0.3
911
Tumor
0.3
445
Tumor
0.3
777
Tumor
0.3
431
Tumor
0.3
1046
Normal
0.3
523
Tumor
0.3
147
Tumor
0.3
484
Normal
0.3
364
Normal
0.3
482
Normal
0.3
1021
Tumor
0.3
921
Tumor
0.3
938
Normal
0.3
954
Normal
0.3
926
Normal
0.3
472
Normal
0.2
823
Tumor
0.2
955
Tumor
0.2
497
Tumor
0.2
231
Tumor
0.2
977
Tumor
0.2
488
Normal
0.2
857
Tumor
0.2
696
Normal
0.2
741
Tumor
0.2
415
Tumor
0.2
944
Normal
0.2
313
Tumor
0.2
534
Normal
0.2
328
Normal
0.2
912
Normal
0.2
867
Tumor
0.2
546
Normal
0.2
925
Tumor
0.2
356
Normal
0.2
723
Tumor
0.2
465
Tumor
0.2
641
Tumor
0.2
627
Tumor
0.2
411
Tumor
0.2
744
Normal
0.2
698
Normal
0.2
1013
Tumor
0.2
545
Tumor
0.2
387
Tumor
0.2
162
Normal
0.2
493
Tumor
0.2
525
Tumor
0.2
494
Normal
0.1
697
Tumor
0.1
375
Tumor
0.1
383
Tumor
0.1
963
Tumor
0.1
881
Tumor
0.1
517
Tumor
0.1
514
Normal
0.1
956
Normal
0.1
425
Tumor
0.1
171
Tumor
0.1
358
Normal
0.1
817
Tumor
0.1
526
Normal
0.1
923
Tumor
0.1
112
Tumor
0.1
443
Tumor
0.1
466
Normal
0.1
213
Tumor
0.1
975
Tumor
0.1
491
Tumor
0.1
343
Tumor
0.1
742
Normal
0.1
738
Normal
0.1
964
Normal
0.1
1042
Normal
0.1
483
Tumor
0.1
1026
Normal
0.1
967
Tumor
0.1
722
Normal
0.1
221
Tumor
0.1
427
Tumor
0.1
913
Tumor
0.1
965
Tumor
0.1
227
Tumor
0.1
813
Tumor
0.1
958
Normal
0.1
978
Normal
0.1
436
Normal
0.1
642
Normal
0.1
818
Normal
0.1
361
Tumor
0.1
433
Tumor
0.1
918
Normal
0.1
412
Normal
0.1
498
Normal
0.1
478
Normal
0.1
615
Tumor
0.1
351
Tumor
0.0
1015
Tumor
0.0
416
Normal
0.0
172
Normal
0.0
883
Tumor
0.0
368
Normal
0.0
924
Normal
0.0
824
Normal
0.0
528
Normal
0.0
756
Normal
0.0
728
Normal
0.0
665
Tumor
0.0
423
Tumor
0.0
873
Tumor
0.0
191
Tumor
0.0
446
Normal
0.0
922
Normal
0.0
721
Tumor
0.0
148
Normal
0.0
1045
Tumor
0.0
858
Normal
0.0
1014
Normal
0.0
285
Tumor
0.0
553
Tumor
0.0
1031
Tumor
0.0
473
Tumor
0.0
1032
Normal
0.0
464
Normal
0.0
1022
Normal
0.0
388
Normal
0.0
1028
Normal
0.0
882
Normal
0.0
456
Normal
0.0
968
Normal
0.0
515
Tumor
0.0
617
Tumor
0.0
866
Normal
0.0
125
Tumor
0.0
814
Normal
0.0
786
Normal
0.0
386
Normal
0.0
467
Tumor
0.0
984
Normal
0.0
573
Tumor
0.0
1044
Normal
0.0
862
Normal
0.0
363
Tumor
0.0
384
Normal
0.0
727
Tumor
0.0
943
Tumor
-0.1
884
Normal
-0.1
366
Normal
-0.1
636
Normal
-0.1
647
Tumor
-0.1
298
Normal
-0.1
518
Normal
-0.1
861
Tumor
-0.1
376
Normal
-0.1
746
Normal
-0.1
864
Normal
-0.1
648
Normal
-0.1
262
Normal
-0.1
284
Normal
-0.1
868
Normal
-0.1
516
Normal
-0.1
737
Tumor
-0.1
567
Tumor
-0.1
1016
Normal
-0.1
462
Normal
-0.1
914
Normal
-0.1
568
Normal
-0.1
474
Normal
-0.1
331
Tumor
-0.1
628
Normal
-0.1
865
Tumor
-0.1
196
Normal
-0.1
724
Normal
-0.1
224
Normal
-0.1
571
Tumor
-0.1
537
Tumor
-0.1
186
Normal
-0.1
355
Tumor
-0.1
286
Normal
-0.1
951
Tumor
-0.1
111
Normal
-0.1
616
Normal
-0.1
426
Normal
-0.1
146
Normal
-0.1
524
Normal
-0.1
354
Normal
-0.1
982
Normal
-0.1
937
Tumor
-0.1
716
Normal
-0.1
277
Tumor
-0.1
981
Tumor
-0.1
272
Normal
-0.1
572
Normal
-0.1
778
Normal
-0.1
672
Normal
-0.1
444
Normal
-0.1
132
Normal
-0.1
222
Normal
-0.1
574
Normal
-0.1
557
Tumor
-0.1
127
Tumor
-0.1
448
Normal
-0.1
952
Normal
-0.1
228
Normal
-0.1
261
Tumor
-0.1
492
Normal
-0.1
187
Tumor
-0.1
432
Normal
-0.1
424
Normal
-0.1
874
Normal
-0.1
816
Normal
-0.1
314
Normal
-0.1
976
Normal
-0.1
185
Tumor
-0.1
392
Normal
-0.1
554
Normal
-0.2
126
Normal
-0.2
232
Normal
-0.2
618
Normal
-0.2
396
Normal
-0.2
471
Tumor
-0.2
223
Tumor
-0.2
564
Normal
-0.2
686
Normal
-0.2
662
Normal
-0.2
135
Tumor
-0.2
635
Tumor
-0.2
852
Normal
-0.2
558
Normal
-0.2
536
Normal
-0.2
138
Normal
-0.2
188
Normal
-0.2
394
Normal
-0.2
278
Normal
-0.2
468
Normal
-0.2
131
Tumor
-0.2
428
Normal
-0.2
785
Tumor
-0.2
145
Tumor
-0.2
124
Normal
-0.2
142
Normal
-0.2
311
Tumor
-0.2
452
Normal
-0.2
312
Normal
-0.2
113
Tumor
-0.2
1043
Tumor
-0.2
666
Normal
-0.2
671
Tumor
-0.2
917
Tumor
-0.2
214
Normal
-0.2
413
Tumor
-0.2
414
Normal
-0.2
352
Normal
-0.3
136
Normal
-0.3
851
Tumor
-0.3
863
Tumor
-0.3
362
Normal
-0.3
271
Tumor
-0.3
332
Normal
-0.3
878
Normal
-0.3
815
Tumor
-0.3
341
Tumor
-0.3
258
Normal
-0.3
267
Tumor
-0.3
434
Normal
-0.3
342
Normal
-0.3
664
Normal
-0.3
755
Tumor
-0.3
217
Tumor
-0.3
367
Tumor
-0.3
192
Normal
-0.3
983
Tumor
-0.3
128
Normal
-0.3
461
Tumor
-0.3
283
Tumor
-0.3
916
Normal
-0.3
877
Tumor
-0.3
141
Tumor
-0.3
1025
Tumor
-0.3
257
Tumor
-0.3
195
Tumor
-0.3
211
Tumor
-0.3
114
Normal
-0.3
353
Tumor
-0.3
966
Normal
-0.4
344
Normal
-0.4
455
Tumor
-0.4
527
Tumor
-0.4
422
Normal
-0.4
218
Normal
-0.4
365
Tumor
-0.4
421
Tumor
-0.4
563
Tumor
-0.4
538
Normal
-0.4
743
Tumor
-0.4
297
Tumor
-0.4
212
Normal
-0.4
395
Tumor
-0.5
268
Normal
-0.5
447
Tumor
-0.5
385
Tumor
-0.5
137
Tumor
-0.5
661
Tumor
-0.7
535
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.