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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ODF3B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
122.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
71.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
70.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
66.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
59.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
58.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
54.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
52.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
48.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
45.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
37.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
31.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ODF3B is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
231
Samples
Sample
Description
TPM
DO45159
0 years, male, NA, stage:3, alive, 1470 days
192.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
115.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
72.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
72.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
68.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
64.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
59.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
57.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
57.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
57.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
57.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
56.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
54.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
52.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
48.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
48.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
47.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
47.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
45.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
40.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
39.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
38.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
38.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
36.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
29.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
921
Tumor
1.5
913
Tumor
1.3
937
Tumor
1.2
911
Tumor
0.8
915
Tumor
0.8
955
Tumor
0.7
756
Normal
0.6
884
Normal
0.6
786
Normal
0.5
525
Tumor
0.4
956
Normal
0.4
777
Tumor
0.4
515
Tumor
0.4
523
Tumor
0.3
746
Normal
0.3
877
Tumor
0.3
926
Normal
0.3
814
Normal
0.3
912
Normal
0.3
922
Normal
0.3
517
Tumor
0.2
882
Normal
0.2
881
Tumor
0.2
524
Normal
0.2
954
Normal
0.2
918
Normal
0.2
516
Normal
0.2
952
Normal
0.2
916
Normal
0.2
778
Normal
0.2
951
Tumor
0.2
917
Tumor
0.2
914
Normal
0.2
514
Normal
0.1
924
Normal
0.1
755
Tumor
0.1
785
Tumor
0.1
938
Normal
0.1
518
Normal
0.0
1027
Tumor
0.0
883
Tumor
0.0
953
Tumor
0.0
513
Tumor
0.0
944
Normal
0.0
878
Normal
0.0
526
Normal
-0.1
745
Tumor
-0.1
813
Tumor
-0.1
925
Tumor
-0.2
943
Tumor
-0.5
923
Tumor
-0.5
1042
Normal
-0.5
1032
Normal
-0.6
1026
Normal
-0.7
1028
Normal
-1.0
1031
Tumor
-1.1
1021
Tumor
-1.2
1022
Normal
-1.2
1025
Tumor
-1.3
1041
Tumor
-1.6
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
