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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
58.5
nTPM
HPA Brain:
83.9
nTPM
GTEx:
58.5
nTPM
FANTOM5:
133.9
Scaled Tags Per Million
Pig:
73.9
nTPM
Mouse:
99.6
nTPM
Allen mouse:
2.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
83.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 76.8
2586
Male, age 75, left hemisphere
113.3
2666
Male, age 74, left hemisphere
82.4
1870
Female, age 42, unknown
76.9
2019
Male, age 18, unknown
74.7
1827
Male, age 72, unknown
73.2
1833
Male, age 53, unknown
72.6
2411
Female, age 72, unknown
72.1
1830
Male, age 51, unknown
71.7
2828
Female, age 72, unknown
70.8
2219
Male, age 76, both hemispheres
60.0
Dorsal raphe nucleus nTPM: 73.5
2047
Male, age 72, unknown
77.9
1828
Male, age 53, unknown
75.1
2298
Female, age 72, unknown
73.7
2750
Male, age 76, both hemispheres
73.4
2016
Female, age 72, unknown
67.5
Inferior colliculus nTPM: 66.6
1848
Female, age 42, unknown
67.6
2849
Male, age 72, unknown
67.6
2097
Female, age 72, unknown
66.2
1890
Male, age 53, unknown
65.0
Median raphe nucleus nTPM: 69.3
2220
Male, age 76, midline
69.3
Periaquaductal grey, anterior nTPM: 70.5
2502
Female, age 75, unknown
73.3
1947
Male, age 18, unknown
71.9
1795
Male, age 51, unknown
66.3
Periaquaductal grey, dorsal nTPM: 63.4
1840
Male, age 53, unknown
70.5
2464
Female, age 72, unknown
65.3
1831
Male, age 72, unknown
62.1
2850
Male, age 76, both hemispheres
55.7
Periaquaductal grey, lateral nTPM: 59.8
2053
Male, age 18, unknown
66.1
2140
Male, age 76, both hemispheres
57.5
2272
Male, age 74, both hemispheres
55.9
Pretectal area nTPM: 71.2
2407
Male, age 75, both hemispheres
89.8
1816
Male, age 51, unknown
77.3
2007
Male, age 72, unknown
75.3
1817
Female, age 42, unknown
75.0
1944
Female, age 72, unknown
74.2
2825
Male, age 18, unknown
69.2
1815
Male, age 53, unknown
69.0
2224
Female, age 72, unknown
67.8
2667
Female, age 75, unknown
67.5
2316
Male, age 76, right hemisphere
62.2
2273
Male, age 74, both hemispheres
56.3
Red nucleus nTPM: 72.3
2584
Male, age 75, left hemisphere
107.8
1821
Female, age 72, unknown
72.0
2785
Male, age 18, unknown
71.7
2769
Male, age 72, unknown
71.5
2227
Male, age 72, unknown
71.1
1954
Female, age 42, unknown
70.4
1865
Male, age 51, unknown
69.6
2588
Male, age 74, left hemisphere
69.4
1904
Male, age 53, unknown
69.2
2725
Female, age 75, unknown
68.6
2503
Female, age 72, unknown
65.7
2823
Male, age 76, right hemisphere
60.3
Substantia nigra nTPM: 83.9
2583
Male, age 75, right hemisphere
104.8
1916
Female, age 42, unknown
93.2
2665
Male, age 74, both hemispheres
86.5
1851
Male, age 51, unknown
86.3
2241
Male, age 72, unknown
84.8
2590
Female, age 75, unknown
84.4
1941
Male, age 53, unknown
83.0
2699
Male, age 18, unknown
73.0
2409
Female, age 72, unknown
71.6
1889
Female, age 72, unknown
71.2
Superior colliculus nTPM: 72.3
2664
Male, age 75, both hemispheres
99.2
2261
Male, age 18, unknown
75.0
2668
Female, age 75, unknown
74.3
2087
Female, age 72, unknown
73.3
1839
Male, age 51, unknown
72.5
1796
Male, age 53, unknown
71.8
2587
Male, age 74, left hemisphere
67.4
1995
Male, age 72, unknown
65.3
1913
Female, age 42, unknown
64.8
1895
Male, age 76, right hemisphere
59.3
Ventral tegmental area nTPM: 75.8
2223
Female, age 72, unknown
84.4
1915
Female, age 42, unknown
78.5
1942
Male, age 51, unknown
76.1
2021
Male, age 53, unknown
75.4
2218
Male, age 76, both hemispheres
70.2
2410
Female, age 72, unknown
70.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 58.5
Samples: 139
Max nTPM: 91.2
Min nTPM: 41.1
Std nTPM: 8.8
Median nTPM: 57.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
91.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
81.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
80.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
80.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
80.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
79.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
76.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
75.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
75.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
73.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
73.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
72.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
71.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
71.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
71.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
71.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
69.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
68.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
67.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
66.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
66.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
66.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
65.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
65.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
65.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
65.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
65.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
65.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
64.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
63.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
63.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
63.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
63.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
63.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
62.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
62.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
62.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
62.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
62.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
62.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
61.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
61.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
61.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
61.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
60.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
60.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
60.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
60.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
60.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
60.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
60.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
60.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
59.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
59.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
59.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
59.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
59.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
59.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
59.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
58.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
58.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
58.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
57.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
57.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
57.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
57.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
57.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
57.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
57.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
57.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
56.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
56.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
56.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
56.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
56.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
56.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
56.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
55.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
55.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
55.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
55.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
55.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
55.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
55.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
55.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
54.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
54.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
54.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
54.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
54.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
54.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
54.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
54.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
54.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
54.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
54.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
53.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
53.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
53.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
53.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
53.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
52.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
52.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
52.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
52.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
52.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
51.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
51.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
51.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
51.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
51.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
51.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
50.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
50.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
50.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
50.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
50.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
50.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
49.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
49.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
49.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
49.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
49.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
48.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
48.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
48.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
48.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
48.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
48.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
48.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
47.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
47.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
46.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
46.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
44.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
44.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
44.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
43.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
41.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 99.6
Samples: 4
Max nTPM: 107.5
Min nTPM: 88.4
Sample A
Male
105.2
Sample B
Male
107.5
Sample C
Female
88.4
Sample D
Female
97.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.