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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
67.4
nTPM
HPA Brain:
94.7
nTPM
GTEx:
67.4
nTPM
FANTOM5:
129.1
Scaled Tags Per Million
Pig:
86.6
nTPM
Mouse:
109.1
nTPM
Allen mouse:
5.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB002589
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 78.4
1855
Male, age 76, left hemisphere
98.0
1898
Male, age 80, left hemisphere
91.7
2621
Female, age 67, right hemisphere
73.7
2148
Female, age 91, left hemisphere
71.7
1911
Female, age 85, right hemisphere
71.0
2529
Female, age 94, left hemisphere
64.6
Dentate gyrus nTPM: 79.0
2010
Male, age 76, both hemispheres
92.7
2530
Female, age 94, left hemisphere
87.4
1927
Female, age 91, both hemispheres
80.2
2246
Female, age 85, both hemispheres
74.1
2531
Female, age 67, both hemispheres
73.6
2528
Male, age 74, both hemispheres
66.2
Entorhinal gyrus nTPM: 78.6
1938
Female, age 85, left hemisphere
89.6
2613
Female, age 94, left hemisphere
83.3
2764
Male, age 80, right hemisphere
82.0
1787
Male, age 76, left hemisphere
77.7
2117
Female, age 91, right hemisphere
73.6
2686
Male, age 75, right hemisphere
65.5
Hippocampus, CA1 nTPM: 94.7
2749
Male, age 80, left hemisphere
134.2
2045
Male, age 76, both hemispheres
118.4
1873
Female, age 85, both hemispheres
76.7
2082
Female, age 91, right hemisphere
76.4
2527
Male, age 74, both hemispheres
68.0
Hippocampus, CA2 nTPM: 76.7
1892
Male, age 76, both hemispheres
98.7
1963
Male, age 80, left hemisphere
83.6
1940
Female, age 85, left hemisphere
75.2
2437
Female, age 94, left hemisphere
70.9
2113
Female, age 91, right hemisphere
69.0
2249
Male, age 74, both hemispheres
62.5
Hippocampus, CA3 nTPM: 85.5
2137
Male, age 80, left hemisphere
127.8
1867
Male, age 76, both hemispheres
93.5
2620
Female, age 94, left hemisphere
82.3
2861
Female, age 67, both hemispheres
80.6
1891
Female, age 85, both hemispheres
66.1
2436
Male, age 74, both hemispheres
62.8
Parahippocampal cortex nTPM: 74.6
1933
Female, age 85, both hemispheres
84.3
2018
Male, age 76, both hemispheres
83.1
2245
Female, age 91, both hemispheres
79.7
2250
Female, age 67, right hemisphere
78.2
1850
Male, age 80, both hemispheres
78.1
2693
Female, age 94, both hemispheres
75.3
1990
Female, age 91, right hemisphere
72.9
2532
Female, age 72, left hemisphere
68.6
2692
Male, age 74, both hemispheres
64.0
2622
Female, age 67, right hemisphere
61.5
Perirhinal gyrus nTPM: 83.5
1847
Female, age 91, left hemisphere
89.4
2521
Female, age 94, right hemisphere
88.2
1841
Female, age 85, right hemisphere
81.8
2848
Male, age 76, right hemisphere
80.5
1794
Male, age 80, right hemisphere
77.7
Subiculum nTPM: 75.2
1901
Male, age 80, both hemispheres
87.0
1977
Female, age 85, both hemispheres
83.8
2042
Male, age 76, both hemispheres
81.5
2729
Female, age 91, right hemisphere
74.1
2619
Male, age 74, both hemispheres
64.3
2438
Female, age 94, left hemisphere
60.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 67.4
Samples: 197
Max nTPM: 124.4
Min nTPM: 38.0
Std nTPM: 15.3
Median nTPM: 67.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
124.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
107.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
107.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
100.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
99.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
97.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
96.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
96.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
94.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
93.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
93.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
91.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
91.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
91.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
91.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
90.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
90.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
88.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
87.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
86.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
86.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
85.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
84.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
84.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
84.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
83.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
83.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
83.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
83.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
83.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
82.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
82.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
82.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
82.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
81.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
81.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
81.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
81.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
80.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
80.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
79.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
78.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
78.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
78.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
78.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
77.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
77.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
77.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
77.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
77.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
76.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
76.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
76.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
76.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
75.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
75.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
75.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
75.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
74.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
74.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
74.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
74.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
73.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
73.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
73.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
72.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
72.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
72.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
71.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
71.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
71.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
71.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
71.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
70.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
70.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
70.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
70.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
70.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
70.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
70.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
70.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
70.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
70.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
70.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
69.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
69.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
69.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
69.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
69.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
69.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
68.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
68.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
68.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
68.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
68.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
68.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
68.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
68.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
67.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
67.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
67.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
67.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
66.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
66.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
66.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
65.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
65.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
65.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
64.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
64.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
64.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
64.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
63.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
63.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
63.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
63.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
63.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
63.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
62.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
62.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
61.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
61.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
61.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
61.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
61.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
60.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
60.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
60.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
60.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
60.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
60.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
60.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
60.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
59.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
59.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
59.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
58.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
58.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
58.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
58.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
57.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
57.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
57.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
57.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
57.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
57.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
57.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
56.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
56.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
55.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
55.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
55.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
55.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
54.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
54.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
54.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
54.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
54.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
54.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
54.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
53.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
53.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
52.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
52.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
51.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
50.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
50.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
50.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
49.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
49.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
49.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
49.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
49.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
48.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
48.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
48.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
47.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
46.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
45.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
45.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
45.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
45.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
45.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
44.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
44.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
44.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
44.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
43.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
43.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
42.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
42.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
41.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
41.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
40.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
39.3
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
39.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
38.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 98.4
Samples: 4
Max nTPM: 102.9
Min nTPM: 93.9
Sample A
Male
100.9
Sample B
Male
93.9
Sample C
Female
102.9
Sample D
Female
95.8
Hippocampal formation nTPM: 109.1
Samples: 4
Max nTPM: 118.4
Min nTPM: 92.6
Sample A
Male
112.6
Sample B
Male
112.8
Sample C
Female
118.4
Sample D
Female
92.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.