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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHID1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
67.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
326.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
238.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
194.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
192.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
181.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
174.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
174.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
153.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
152.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
150.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
149.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
146.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
146.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
137.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
134.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
130.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
129.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
126.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
126.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
126.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
125.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
124.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
122.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
122.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
121.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
121.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
120.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
118.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
117.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
115.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
114.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
112.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
111.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
110.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
109.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
109.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
108.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
108.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
107.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
106.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
106.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
104.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
104.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
103.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
103.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
103.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
102.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
102.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
101.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
101.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
101.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
101.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
99.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
99.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
98.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
95.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
95.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
94.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
93.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
93.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
93.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
93.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
93.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
92.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
92.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
92.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
91.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
90.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
90.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
90.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
90.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
88.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
88.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
86.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
86.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
85.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
85.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
84.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
84.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
83.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
83.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
83.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
82.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
81.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
81.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
81.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
81.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
81.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
81.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
80.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
80.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
80.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
80.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
79.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
79.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
79.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
78.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
78.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
76.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
76.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
76.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
76.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
76.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
75.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
74.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
73.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
72.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
72.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
72.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
72.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
72.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
72.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
71.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
71.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
71.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
71.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
71.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
71.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
71.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
71.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
70.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
70.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
70.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
70.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
70.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
69.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
69.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
69.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
69.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
68.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
68.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
68.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
68.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
68.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
67.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
67.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
67.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
67.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
67.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
66.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
66.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
66.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
66.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
66.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
66.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
66.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
65.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
65.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
65.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
65.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
64.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
64.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
63.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
63.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
63.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
62.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
62.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
62.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
62.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
61.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
61.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
61.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
61.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
61.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
61.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
61.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
60.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
60.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
60.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
60.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
60.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
60.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
59.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
59.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
59.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
59.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
59.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
58.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
58.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
57.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
57.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
57.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
57.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
57.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
57.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
56.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
56.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
56.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
56.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
56.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
56.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
56.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
55.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
55.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
55.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
55.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
55.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
55.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
55.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
55.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
55.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
54.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
54.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
54.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
53.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
53.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
53.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
52.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
52.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
52.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
52.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
51.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
51.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
51.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
50.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
50.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
50.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
50.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
50.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
50.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
50.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
50.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
50.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
50.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
49.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
49.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
49.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
49.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
49.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
49.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
49.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
48.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
48.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
48.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
48.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
48.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
47.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
47.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
47.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
47.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
46.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
46.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
46.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
45.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
45.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
45.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
45.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
45.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
44.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
44.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
44.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
43.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
43.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
42.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
42.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
42.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
42.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
42.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
41.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
41.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
41.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
41.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
40.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
39.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
39.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
39.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
39.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
39.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
38.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
38.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
37.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
37.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
37.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
35.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
34.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CHID1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
72.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
53.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
44.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
38.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
37.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
30.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
857
Tumor
1.6
1027
Tumor
1.3
777
Tumor
1.2
553
Tumor
0.9
171
Tumor
0.9
462
Normal
0.9
466
Normal
0.9
162
Normal
0.9
147
Tumor
0.9
172
Normal
0.9
227
Tumor
0.9
635
Tumor
0.9
921
Tumor
0.8
392
Normal
0.8
271
Tumor
0.8
648
Normal
0.8
863
Tumor
0.8
527
Tumor
0.8
125
Tumor
0.8
394
Normal
0.7
627
Tumor
0.7
1014
Normal
0.7
744
Normal
0.7
342
Normal
0.6
743
Tumor
0.6
515
Tumor
0.6
132
Normal
0.6
435
Tumor
0.6
396
Normal
0.6
737
Tumor
0.6
922
Normal
0.6
142
Normal
0.6
128
Normal
0.6
738
Normal
0.6
481
Tumor
0.6
298
Normal
0.5
136
Normal
0.5
461
Tumor
0.5
222
Normal
0.5
714
Normal
0.5
642
Normal
0.5
944
Normal
0.5
428
Normal
0.5
484
Normal
0.5
866
Normal
0.5
858
Normal
0.5
964
Normal
0.5
351
Tumor
0.5
365
Tumor
0.5
672
Normal
0.5
1046
Normal
0.5
314
Normal
0.5
912
Normal
0.5
285
Tumor
0.5
232
Normal
0.5
343
Tumor
0.5
523
Tumor
0.5
615
Tumor
0.5
1016
Normal
0.5
616
Normal
0.5
666
Normal
0.5
618
Normal
0.5
671
Tumor
0.5
258
Normal
0.4
513
Tumor
0.4
526
Normal
0.4
968
Normal
0.4
376
Normal
0.4
356
Normal
0.4
436
Normal
0.4
488
Normal
0.4
628
Normal
0.4
786
Normal
0.4
636
Normal
0.4
882
Normal
0.4
742
Normal
0.4
352
Normal
0.4
148
Normal
0.4
388
Normal
0.4
664
Normal
0.4
424
Normal
0.4
221
Tumor
0.4
938
Normal
0.4
114
Normal
0.4
868
Normal
0.4
482
Normal
0.4
963
Tumor
0.4
647
Tumor
0.4
1022
Normal
0.4
414
Normal
0.4
818
Normal
0.4
641
Tumor
0.4
862
Normal
0.4
186
Normal
0.4
446
Normal
0.4
464
Normal
0.4
368
Normal
0.3
278
Normal
0.3
728
Normal
0.3
914
Normal
0.3
432
Normal
0.3
1032
Normal
0.3
564
Normal
0.3
286
Normal
0.3
554
Normal
0.3
877
Tumor
0.3
192
Normal
0.3
952
Normal
0.3
448
Normal
0.3
528
Normal
0.3
111
Normal
0.3
686
Normal
0.3
722
Normal
0.3
332
Normal
0.3
328
Normal
0.3
1043
Tumor
0.3
386
Normal
0.3
727
Tumor
0.3
138
Normal
0.3
468
Normal
0.3
721
Tumor
0.3
723
Tumor
0.3
978
Normal
0.3
268
Normal
0.3
953
Tumor
0.3
918
Normal
0.3
473
Tumor
0.3
824
Normal
0.3
534
Normal
0.2
878
Normal
0.2
196
Normal
0.2
954
Normal
0.2
884
Normal
0.2
698
Normal
0.2
126
Normal
0.2
976
Normal
0.2
141
Tumor
0.2
536
Normal
0.2
124
Normal
0.2
524
Normal
0.2
713
Tumor
0.2
218
Normal
0.2
456
Normal
0.2
518
Normal
0.2
558
Normal
0.2
816
Normal
0.2
434
Normal
0.2
498
Normal
0.2
344
Normal
0.2
574
Normal
0.2
297
Tumor
0.2
494
Normal
0.2
224
Normal
0.2
426
Normal
0.2
188
Normal
0.2
452
Normal
0.2
228
Normal
0.2
262
Normal
0.2
983
Tumor
0.2
366
Normal
0.2
214
Normal
0.2
696
Normal
0.2
746
Normal
0.1
492
Normal
0.1
358
Normal
0.1
384
Normal
0.1
444
Normal
0.1
362
Normal
0.1
917
Tumor
0.1
412
Normal
0.1
277
Tumor
0.1
272
Normal
0.1
312
Normal
0.1
874
Normal
0.1
958
Normal
0.1
984
Normal
0.1
284
Normal
0.1
778
Normal
0.1
354
Normal
0.1
212
Normal
0.1
545
Tumor
0.1
472
Normal
0.1
1028
Normal
0.1
1042
Normal
0.1
474
Normal
0.1
455
Tumor
0.1
331
Tumor
0.1
663
Tumor
0.1
916
Normal
0.1
211
Tumor
0.1
756
Normal
0.1
926
Normal
0.1
478
Normal
0.1
662
Normal
0.1
514
Normal
0.1
516
Normal
0.1
572
Normal
0.1
131
Tumor
0.0
487
Tumor
0.0
982
Normal
0.0
327
Tumor
0.0
1026
Normal
0.0
864
Normal
0.0
665
Tumor
0.0
363
Tumor
0.0
257
Tumor
0.0
943
Tumor
0.0
966
Normal
0.0
146
Normal
0.0
568
Normal
0.0
814
Normal
0.0
491
Tumor
0.0
924
Normal
0.0
724
Normal
0.0
956
Normal
0.0
813
Tumor
0.0
185
Tumor
0.0
217
Tumor
0.0
852
Normal
0.0
433
Tumor
0.0
367
Tumor
0.0
1044
Normal
-0.1
538
Normal
-0.1
422
Normal
-0.1
535
Tumor
-0.1
341
Tumor
-0.1
557
Tumor
-0.1
1013
Tumor
-0.1
385
Tumor
-0.1
661
Tumor
-0.1
977
Tumor
-0.1
716
Normal
-0.1
467
Tumor
-0.1
881
Tumor
-0.1
423
Tumor
-0.1
913
Tumor
-0.1
364
Normal
-0.1
416
Normal
-0.1
447
Tumor
-0.1
463
Tumor
-0.2
546
Normal
-0.2
815
Tumor
-0.2
517
Tumor
-0.2
391
Tumor
-0.2
421
Tumor
-0.2
573
Tumor
-0.2
127
Tumor
-0.2
135
Tumor
-0.2
283
Tumor
-0.2
1015
Tumor
-0.2
525
Tumor
-0.2
697
Tumor
-0.2
785
Tumor
-0.2
873
Tumor
-0.2
865
Tumor
-0.2
867
Tumor
-0.2
161
Tumor
-0.2
533
Tumor
-0.2
1045
Tumor
-0.2
563
Tumor
-0.2
1021
Tumor
-0.3
915
Tumor
-0.3
1025
Tumor
-0.3
213
Tumor
-0.3
851
Tumor
-0.3
393
Tumor
-0.3
1031
Tumor
-0.3
195
Tumor
-0.3
741
Tumor
-0.3
123
Tumor
-0.3
823
Tumor
-0.3
955
Tumor
-0.3
411
Tumor
-0.3
685
Tumor
-0.3
415
Tumor
-0.3
375
Tumor
-0.3
311
Tumor
-0.3
413
Tumor
-0.3
187
Tumor
-0.3
925
Tumor
-0.3
313
Tumor
-0.4
497
Tumor
-0.4
427
Tumor
-0.4
465
Tumor
-0.4
483
Tumor
-0.4
493
Tumor
-0.4
883
Tumor
-0.4
387
Tumor
-0.4
112
Tumor
-0.4
137
Tumor
-0.4
451
Tumor
-0.4
361
Tumor
-0.4
975
Tumor
-0.4
981
Tumor
-0.4
383
Tumor
-0.4
191
Tumor
-0.4
261
Tumor
-0.5
445
Tumor
-0.5
443
Tumor
-0.5
617
Tumor
-0.5
923
Tumor
-0.5
353
Tumor
-0.5
223
Tumor
-0.5
967
Tumor
-0.5
571
Tumor
-0.5
817
Tumor
-0.6
471
Tumor
-0.6
425
Tumor
-0.6
695
Tumor
-0.6
145
Tumor
-0.6
113
Tumor
-0.6
231
Tumor
-0.6
715
Tumor
-0.6
355
Tumor
-0.6
911
Tumor
-0.6
395
Tumor
-0.6
861
Tumor
-0.7
965
Tumor
-0.7
267
Tumor
-0.7
957
Tumor
-0.7
951
Tumor
-0.7
477
Tumor
-0.8
1041
Tumor
-0.8
567
Tumor
-0.8
937
Tumor
-0.9
431
Tumor
-0.9
357
Tumor
-0.9
537
Tumor
-1.0
745
Tumor
-1.0
755
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
