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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AGTRAP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
126.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
119.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
106.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
105.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
104.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
94.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
77.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
69.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
63.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
61.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
56.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
52.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
49.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
49.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
49.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
48.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
47.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
47.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
41.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
40.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
40.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
36.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AGTRAP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
88.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
68.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
68.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
67.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
64.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
64.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
60.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
59.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
54.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
1.6
491
Tumor
1.5
283
Tumor
1.3
343
Tumor
1.1
953
Tumor
1.0
571
Tumor
0.9
375
Tumor
0.9
965
Tumor
0.8
573
Tumor
0.8
355
Tumor
0.8
311
Tumor
0.7
695
Tumor
0.7
211
Tumor
0.7
567
Tumor
0.7
685
Tumor
0.6
231
Tumor
0.6
327
Tumor
0.6
917
Tumor
0.6
313
Tumor
0.6
1013
Tumor
0.6
421
Tumor
0.6
497
Tumor
0.5
478
Normal
0.5
813
Tumor
0.5
697
Tumor
0.5
142
Normal
0.4
617
Tumor
0.4
415
Tumor
0.4
455
Tumor
0.4
384
Normal
0.4
365
Tumor
0.4
533
Tumor
0.4
395
Tumor
0.4
663
Tumor
0.4
492
Normal
0.4
357
Tumor
0.4
642
Normal
0.4
636
Normal
0.4
536
Normal
0.4
814
Normal
0.3
161
Tumor
0.3
628
Normal
0.3
473
Tumor
0.3
461
Tumor
0.3
627
Tumor
0.3
425
Tumor
0.3
823
Tumor
0.3
1027
Tumor
0.3
925
Tumor
0.3
618
Normal
0.3
366
Normal
0.3
391
Tumor
0.3
232
Normal
0.2
427
Tumor
0.2
376
Normal
0.2
487
Tumor
0.2
616
Normal
0.2
368
Normal
0.2
383
Tumor
0.2
943
Tumor
0.2
817
Tumor
0.2
444
Normal
0.2
187
Tumor
0.2
146
Normal
0.2
958
Normal
0.2
524
Normal
0.2
557
Tumor
0.2
362
Normal
0.2
332
Normal
0.1
272
Normal
0.1
268
Normal
0.1
367
Tumor
0.1
434
Normal
0.1
563
Tumor
0.1
284
Normal
0.1
498
Normal
0.1
132
Normal
0.1
314
Normal
0.1
525
Tumor
0.1
538
Normal
0.1
387
Tumor
0.1
916
Normal
0.1
477
Tumor
0.1
966
Normal
0.1
224
Normal
0.1
482
Normal
0.1
957
Tumor
0.1
572
Normal
0.1
535
Tumor
0.1
956
Normal
0.1
447
Tumor
0.1
278
Normal
0.1
262
Normal
0.1
113
Tumor
0.1
978
Normal
0.1
968
Normal
0.1
545
Tumor
0.1
363
Tumor
0.1
361
Tumor
0.1
1014
Normal
0.0
171
Tumor
0.0
223
Tumor
0.0
615
Tumor
0.0
744
Normal
0.0
433
Tumor
0.0
145
Tumor
0.0
297
Tumor
0.0
212
Normal
0.0
123
Tumor
0.0
1015
Tumor
0.0
661
Tumor
0.0
558
Normal
0.0
818
Normal
0.0
124
Normal
0.0
976
Normal
0.0
494
Normal
0.0
227
Tumor
0.0
641
Tumor
0.0
954
Normal
0.0
136
Normal
0.0
951
Tumor
0.0
396
Normal
0.0
914
Normal
0.0
474
Normal
0.0
261
Tumor
0.0
777
Tumor
0.0
713
Tumor
0.0
141
Tumor
0.0
472
Normal
0.0
462
Normal
0.0
385
Tumor
0.0
913
Tumor
0.0
312
Normal
0.0
412
Normal
0.0
864
Normal
0.0
138
Normal
0.0
422
Normal
-0.1
388
Normal
-0.1
967
Tumor
-0.1
984
Normal
-0.1
188
Normal
-0.1
257
Tumor
-0.1
416
Normal
-0.1
963
Tumor
-0.1
944
Normal
-0.1
298
Normal
-0.1
1021
Tumor
-0.1
724
Normal
-0.1
955
Tumor
-0.1
351
Tumor
-0.1
466
Normal
-0.1
852
Normal
-0.1
463
Tumor
-0.1
922
Normal
-0.1
356
Normal
-0.1
411
Tumor
-0.1
214
Normal
-0.1
671
Tumor
-0.1
786
Normal
-0.1
267
Tumor
-0.1
721
Tumor
-0.1
516
Normal
-0.1
185
Tumor
-0.1
983
Tumor
-0.1
1016
Normal
-0.1
386
Normal
-0.1
878
Normal
-0.1
286
Normal
-0.1
414
Normal
-0.1
392
Normal
-0.1
982
Normal
-0.1
258
Normal
-0.1
364
Normal
-0.1
451
Tumor
-0.1
483
Tumor
-0.1
217
Tumor
-0.1
851
Tumor
-0.1
172
Normal
-0.1
432
Normal
-0.1
514
Normal
-0.1
488
Normal
-0.2
554
Normal
-0.2
435
Tumor
-0.2
228
Normal
-0.2
147
Tumor
-0.2
882
Normal
-0.2
186
Normal
-0.2
858
Normal
-0.2
328
Normal
-0.2
863
Tumor
-0.2
344
Normal
-0.2
448
Normal
-0.2
218
Normal
-0.2
135
Tumor
-0.2
778
Normal
-0.2
737
Tumor
-0.2
574
Normal
-0.2
468
Normal
-0.2
481
Tumor
-0.2
698
Normal
-0.2
635
Tumor
-0.2
921
Tumor
-0.2
394
Normal
-0.2
715
Tumor
-0.2
523
Tumor
-0.2
213
Tumor
-0.2
546
Normal
-0.2
526
Normal
-0.2
464
Normal
-0.2
484
Normal
-0.2
686
Normal
-0.2
513
Tumor
-0.2
564
Normal
-0.2
938
Normal
-0.2
883
Tumor
-0.2
877
Tumor
-0.2
465
Tumor
-0.2
436
Normal
-0.2
1042
Normal
-0.2
452
Normal
-0.2
137
Tumor
-0.2
331
Tumor
-0.2
446
Normal
-0.3
728
Normal
-0.3
467
Tumor
-0.3
191
Tumor
-0.3
354
Normal
-0.3
741
Tumor
-0.3
977
Tumor
-0.3
755
Tumor
-0.3
285
Tumor
-0.3
1031
Tumor
-0.3
148
Normal
-0.3
128
Normal
-0.3
926
Normal
-0.3
352
Normal
-0.3
423
Tumor
-0.3
196
Normal
-0.3
222
Normal
-0.3
192
Normal
-0.3
857
Tumor
-0.3
528
Normal
-0.3
722
Normal
-0.3
1026
Normal
-0.3
727
Tumor
-0.3
131
Tumor
-0.3
666
Normal
-0.3
815
Tumor
-0.3
568
Normal
-0.3
714
Normal
-0.3
923
Tumor
-0.3
672
Normal
-0.3
975
Tumor
-0.3
358
Normal
-0.3
515
Tumor
-0.3
662
Normal
-0.3
162
Normal
-0.3
816
Normal
-0.3
424
Normal
-0.3
964
Normal
-0.3
918
Normal
-0.3
426
Normal
-0.3
353
Tumor
-0.4
342
Normal
-0.4
271
Tumor
-0.4
1028
Normal
-0.4
443
Tumor
-0.4
518
Normal
-0.4
716
Normal
-0.4
534
Normal
-0.4
277
Tumor
-0.4
696
Normal
-0.4
868
Normal
-0.4
114
Normal
-0.4
824
Normal
-0.4
1043
Tumor
-0.4
445
Tumor
-0.4
1044
Normal
-0.4
456
Normal
-0.4
756
Normal
-0.4
493
Tumor
-0.4
912
Normal
-0.4
924
Normal
-0.4
1046
Normal
-0.4
428
Normal
-0.4
723
Tumor
-0.4
126
Normal
-0.4
431
Tumor
-0.4
664
Normal
-0.4
952
Normal
-0.4
1041
Tumor
-0.4
742
Normal
-0.4
738
Normal
-0.5
746
Normal
-0.5
527
Tumor
-0.5
341
Tumor
-0.5
881
Tumor
-0.5
648
Normal
-0.5
743
Tumor
-0.5
517
Tumor
-0.5
111
Normal
-0.5
981
Tumor
-0.5
537
Tumor
-0.5
1045
Tumor
-0.5
862
Normal
-0.5
884
Normal
-0.5
1022
Normal
-0.5
112
Tumor
-0.6
413
Tumor
-0.6
1032
Normal
-0.6
195
Tumor
-0.6
915
Tumor
-0.6
911
Tumor
-0.6
785
Tumor
-0.6
861
Tumor
-0.6
665
Tumor
-0.6
471
Tumor
-0.6
1025
Tumor
-0.6
874
Normal
-0.6
866
Normal
-0.6
865
Tumor
-0.7
937
Tumor
-0.7
393
Tumor
-0.7
867
Tumor
-0.7
745
Tumor
-0.8
221
Tumor
-0.9
647
Tumor
-0.9
127
Tumor
-0.9
553
Tumor
-0.9
873
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
