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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTHFR is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTHFR is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.9
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
713
Tumor
1.3
571
Tumor
1.2
1021
Tumor
1.1
557
Tumor
1.1
395
Tumor
1.0
727
Tumor
1.0
563
Tumor
0.9
697
Tumor
0.9
112
Tumor
0.8
361
Tumor
0.8
171
Tumor
0.8
327
Tumor
0.8
685
Tumor
0.8
913
Tumor
0.8
525
Tumor
0.7
721
Tumor
0.7
427
Tumor
0.7
515
Tumor
0.7
857
Tumor
0.7
383
Tumor
0.7
925
Tumor
0.7
443
Tumor
0.7
353
Tumor
0.6
533
Tumor
0.6
135
Tumor
0.6
573
Tumor
0.6
923
Tumor
0.6
778
Normal
0.6
538
Normal
0.6
223
Tumor
0.5
672
Normal
0.5
724
Normal
0.5
1015
Tumor
0.5
455
Tumor
0.5
817
Tumor
0.5
1014
Normal
0.5
777
Tumor
0.5
277
Tumor
0.5
344
Normal
0.5
1044
Normal
0.5
524
Normal
0.5
113
Tumor
0.4
951
Tumor
0.4
425
Tumor
0.4
463
Tumor
0.4
444
Normal
0.4
341
Tumor
0.4
432
Normal
0.4
686
Normal
0.4
814
Normal
0.4
728
Normal
0.4
451
Tumor
0.4
161
Tumor
0.4
954
Normal
0.4
456
Normal
0.4
221
Tumor
0.3
937
Tumor
0.3
343
Tumor
0.3
187
Tumor
0.3
617
Tumor
0.3
1043
Tumor
0.3
354
Normal
0.3
493
Tumor
0.3
352
Normal
0.3
1028
Normal
0.3
213
Tumor
0.3
365
Tumor
0.3
865
Tumor
0.3
661
Tumor
0.3
497
Tumor
0.3
231
Tumor
0.3
537
Tumor
0.3
536
Normal
0.3
714
Normal
0.3
858
Normal
0.3
396
Normal
0.3
446
Normal
0.3
362
Normal
0.3
737
Tumor
0.3
1046
Normal
0.3
883
Tumor
0.3
172
Normal
0.2
558
Normal
0.2
572
Normal
0.2
1031
Tumor
0.2
474
Normal
0.2
467
Tumor
0.2
917
Tumor
0.2
863
Tumor
0.2
224
Normal
0.2
473
Tumor
0.2
433
Tumor
0.2
384
Normal
0.2
478
Normal
0.2
412
Normal
0.2
1041
Tumor
0.2
283
Tumor
0.2
368
Normal
0.2
342
Normal
0.2
568
Normal
0.2
716
Normal
0.2
918
Normal
0.2
915
Tumor
0.2
146
Normal
0.2
786
Normal
0.2
981
Tumor
0.2
356
Normal
0.1
358
Normal
0.1
436
Normal
0.1
136
Normal
0.1
367
Tumor
0.1
912
Normal
0.1
434
Normal
0.1
461
Tumor
0.1
914
Normal
0.1
272
Normal
0.1
868
Normal
0.1
471
Tumor
0.1
864
Normal
0.1
816
Normal
0.1
258
Normal
0.1
926
Normal
0.1
916
Normal
0.1
387
Tumor
0.1
984
Normal
0.1
513
Tumor
0.1
823
Tumor
0.1
262
Normal
0.1
1032
Normal
0.1
671
Tumor
0.1
867
Tumor
0.1
818
Normal
0.1
965
Tumor
0.1
311
Tumor
0.1
482
Normal
0.1
813
Tumor
0.1
364
Normal
0.1
881
Tumor
0.1
516
Normal
0.1
312
Normal
0.1
742
Normal
0.1
214
Normal
0.1
386
Normal
0.1
663
Tumor
0.1
465
Tumor
0.1
498
Normal
0.1
162
Normal
0.1
267
Tumor
0.1
284
Normal
0.1
468
Normal
0.1
824
Normal
0.1
195
Tumor
0.0
222
Normal
0.0
878
Normal
0.0
528
Normal
0.0
413
Tumor
0.0
861
Tumor
0.0
366
Normal
0.0
332
Normal
0.0
376
Normal
0.0
696
Normal
0.0
228
Normal
0.0
1013
Tumor
0.0
722
Normal
0.0
191
Tumor
0.0
466
Normal
0.0
192
Normal
0.0
527
Tumor
0.0
487
Tumor
0.0
1045
Tumor
0.0
882
Normal
0.0
526
Normal
0.0
723
Tumor
0.0
426
Normal
0.0
978
Normal
0.0
257
Tumor
0.0
271
Tumor
0.0
666
Normal
0.0
1022
Normal
0.0
982
Normal
0.0
967
Tumor
0.0
628
Normal
0.0
328
Normal
0.0
664
Normal
0.0
492
Normal
0.0
375
Tumor
0.0
738
Normal
0.0
662
Normal
0.0
114
Normal
0.0
452
Normal
0.0
464
Normal
-0.1
394
Normal
-0.1
428
Normal
-0.1
217
Tumor
-0.1
363
Tumor
-0.1
477
Tumor
-0.1
517
Tumor
-0.1
185
Tumor
-0.1
924
Normal
-0.1
188
Normal
-0.1
746
Normal
-0.1
534
Normal
-0.1
447
Tumor
-0.1
514
Normal
-0.1
862
Normal
-0.1
627
Tumor
-0.1
616
Normal
-0.1
642
Normal
-0.1
278
Normal
-0.1
435
Tumor
-0.1
481
Tumor
-0.1
618
Normal
-0.1
884
Normal
-0.1
196
Normal
-0.1
977
Tumor
-0.1
411
Tumor
-0.1
483
Tumor
-0.1
968
Normal
-0.1
126
Normal
-0.1
472
Normal
-0.1
944
Normal
-0.1
975
Tumor
-0.1
866
Normal
-0.1
388
Normal
-0.1
488
Normal
-0.1
268
Normal
-0.1
232
Normal
-0.1
145
Tumor
-0.1
943
Tumor
-0.1
953
Tumor
-0.1
976
Normal
-0.1
1016
Normal
-0.1
141
Tumor
-0.1
218
Normal
-0.1
648
Normal
-0.1
414
Normal
-0.1
564
Normal
-0.2
286
Normal
-0.2
355
Tumor
-0.2
148
Normal
-0.2
874
Normal
-0.2
545
Tumor
-0.2
554
Normal
-0.2
665
Tumor
-0.2
815
Tumor
-0.2
641
Tumor
-0.2
785
Tumor
-0.2
955
Tumor
-0.2
431
Tumor
-0.2
111
Normal
-0.2
138
Normal
-0.2
574
Normal
-0.2
1027
Tumor
-0.2
535
Tumor
-0.2
756
Normal
-0.2
958
Normal
-0.2
448
Normal
-0.2
423
Tumor
-0.2
966
Normal
-0.2
567
Tumor
-0.2
741
Tumor
-0.2
938
Normal
-0.2
392
Normal
-0.2
462
Normal
-0.2
546
Normal
-0.2
385
Tumor
-0.3
142
Normal
-0.3
424
Normal
-0.3
186
Normal
-0.3
298
Normal
-0.3
484
Normal
-0.3
744
Normal
-0.3
1026
Normal
-0.3
125
Tumor
-0.3
695
Tumor
-0.3
128
Normal
-0.3
124
Normal
-0.3
1042
Normal
-0.3
956
Normal
-0.3
391
Tumor
-0.3
852
Normal
-0.3
494
Normal
-0.4
964
Normal
-0.4
331
Tumor
-0.4
518
Normal
-0.4
261
Tumor
-0.4
873
Tumor
-0.4
963
Tumor
-0.4
921
Tumor
-0.4
132
Normal
-0.4
147
Tumor
-0.4
445
Tumor
-0.4
212
Normal
-0.4
715
Tumor
-0.4
952
Normal
-0.4
922
Normal
-0.4
127
Tumor
-0.4
647
Tumor
-0.4
636
Normal
-0.4
698
Normal
-0.4
851
Tumor
-0.4
615
Tumor
-0.4
745
Tumor
-0.5
351
Tumor
-0.5
297
Tumor
-0.5
416
Normal
-0.5
137
Tumor
-0.5
983
Tumor
-0.5
415
Tumor
-0.5
491
Tumor
-0.6
211
Tumor
-0.6
285
Tumor
-0.6
421
Tumor
-0.6
553
Tumor
-0.6
877
Tumor
-0.6
635
Tumor
-0.6
911
Tumor
-0.6
422
Normal
-0.6
314
Normal
-0.6
755
Tumor
-0.7
1025
Tumor
-0.7
957
Tumor
-0.8
123
Tumor
-0.9
523
Tumor
-0.9
227
Tumor
-0.9
743
Tumor
-1.0
357
Tumor
-1.0
313
Tumor
-1.0
131
Tumor
-1.3
393
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
