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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC24C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
81.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
62.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
54.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
50.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
44.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
44.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
43.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
41.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
26.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC24C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.9
Number of samples
231
Samples
Sample
Description
TPM
DO50799
0 years, female, NA, stage:2, alive, 540 days
68.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
67.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
61.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
57.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
50.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
48.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
48.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
45.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
43.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
42.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
42.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
41.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
40.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
38.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
37.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
36.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
34.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
33.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.9
685
Tumor
0.8
745
Tumor
0.7
257
Tumor
0.7
937
Tumor
0.7
271
Tumor
0.7
925
Tumor
0.6
921
Tumor
0.6
533
Tumor
0.5
327
Tumor
0.5
477
Tumor
0.5
1025
Tumor
0.5
553
Tumor
0.5
635
Tumor
0.4
227
Tumor
0.4
147
Tumor
0.4
171
Tumor
0.4
965
Tumor
0.4
911
Tumor
0.4
341
Tumor
0.4
435
Tumor
0.4
123
Tumor
0.3
221
Tumor
0.3
1021
Tumor
0.3
755
Tumor
0.3
741
Tumor
0.3
387
Tumor
0.3
851
Tumor
0.3
815
Tumor
0.3
567
Tumor
0.3
955
Tumor
0.2
537
Tumor
0.2
695
Tumor
0.2
951
Tumor
0.2
641
Tumor
0.2
713
Tumor
0.2
231
Tumor
0.2
743
Tumor
0.2
113
Tumor
0.2
363
Tumor
0.2
727
Tumor
0.2
353
Tumor
0.2
314
Normal
0.2
571
Tumor
0.2
443
Tumor
0.2
125
Tumor
0.2
1043
Tumor
0.2
365
Tumor
0.2
436
Normal
0.2
172
Normal
0.2
411
Tumor
0.1
127
Tumor
0.1
617
Tumor
0.1
141
Tumor
0.1
881
Tumor
0.1
615
Tumor
0.1
738
Normal
0.1
128
Normal
0.1
424
Normal
0.1
111
Normal
0.1
414
Normal
0.1
648
Normal
0.1
746
Normal
0.1
722
Normal
0.1
868
Normal
0.1
258
Normal
0.1
517
Tumor
0.1
278
Normal
0.1
162
Normal
0.1
433
Tumor
0.1
647
Tumor
0.1
331
Tumor
0.1
728
Normal
0.1
462
Normal
0.1
1041
Tumor
0.1
697
Tumor
0.1
426
Normal
0.1
145
Tumor
0.1
466
Normal
0.1
534
Normal
0.1
981
Tumor
0.1
232
Normal
0.1
423
Tumor
0.1
642
Normal
0.1
468
Normal
0.1
464
Normal
0.1
742
Normal
0.1
618
Normal
0.1
135
Tumor
0.1
356
Normal
0.1
451
Tumor
0.1
391
Tumor
0.1
148
Normal
0.0
428
Normal
0.0
721
Tumor
0.0
328
Normal
0.0
212
Normal
0.0
564
Normal
0.0
188
Normal
0.0
131
Tumor
0.0
422
Normal
0.0
883
Tumor
0.0
474
Normal
0.0
214
Normal
0.0
864
Normal
0.0
526
Normal
0.0
385
Tumor
0.0
616
Normal
0.0
416
Normal
0.0
446
Normal
0.0
262
Normal
0.0
218
Normal
0.0
977
Tumor
0.0
286
Normal
0.0
358
Normal
0.0
914
Normal
0.0
268
Normal
0.0
272
Normal
0.0
817
Tumor
0.0
421
Tumor
0.0
874
Normal
0.0
723
Tumor
0.0
628
Normal
0.0
187
Tumor
0.0
877
Tumor
0.0
786
Normal
0.0
332
Normal
0.0
471
Tumor
0.0
228
Normal
0.0
664
Normal
0.0
368
Normal
0.0
956
Normal
0.0
944
Normal
0.0
952
Normal
0.0
432
Normal
0.0
114
Normal
0.0
132
Normal
0.0
1028
Normal
0.0
126
Normal
0.0
361
Tumor
0.0
136
Normal
0.0
866
Normal
0.0
285
Tumor
0.0
434
Normal
0.0
413
Tumor
0.0
222
Normal
0.0
277
Tumor
0.0
425
Tumor
0.0
196
Normal
0.0
482
Normal
0.0
367
Tumor
0.0
918
Normal
0.0
473
Tumor
0.0
452
Normal
0.0
867
Tumor
0.0
926
Normal
0.0
662
Normal
0.0
666
Normal
0.0
298
Normal
0.0
138
Normal
0.0
456
Normal
0.0
858
Normal
0.0
513
Tumor
0.0
376
Normal
0.0
412
Normal
0.0
824
Normal
0.0
665
Tumor
0.0
922
Normal
0.0
915
Tumor
0.0
528
Normal
0.0
636
Normal
0.0
744
Normal
0.0
873
Tumor
0.0
1032
Normal
0.0
366
Normal
0.0
557
Tumor
0.0
518
Normal
0.0
362
Normal
0.0
696
Normal
0.0
186
Normal
0.0
261
Tumor
0.0
431
Tumor
0.0
472
Normal
-0.1
191
Tumor
-0.1
267
Tumor
-0.1
465
Tumor
-0.1
967
Tumor
-0.1
523
Tumor
-0.1
448
Normal
-0.1
558
Normal
-0.1
494
Normal
-0.1
1016
Normal
-0.1
574
Normal
-0.1
816
Normal
-0.1
284
Normal
-0.1
568
Normal
-0.1
1042
Normal
-0.1
661
Tumor
-0.1
983
Tumor
-0.1
1044
Normal
-0.1
714
Normal
-0.1
546
Normal
-0.1
1026
Normal
-0.1
572
Normal
-0.1
467
Tumor
-0.1
1031
Tumor
-0.1
1046
Normal
-0.1
554
Normal
-0.1
1022
Normal
-0.1
195
Tumor
-0.1
672
Normal
-0.1
142
Normal
-0.1
968
Normal
-0.1
396
Normal
-0.1
976
Normal
-0.1
862
Normal
-0.1
185
Tumor
-0.1
352
Normal
-0.1
312
Normal
-0.1
514
Normal
-0.1
388
Normal
-0.1
354
Normal
-0.1
344
Normal
-0.1
778
Normal
-0.1
857
Tumor
-0.1
963
Tumor
-0.1
481
Tumor
-0.1
938
Normal
-0.1
563
Tumor
-0.1
297
Tumor
-0.1
392
Normal
-0.1
878
Normal
-0.1
357
Tumor
-0.1
455
Tumor
-0.1
217
Tumor
-0.1
964
Normal
-0.1
627
Tumor
-0.1
785
Tumor
-0.1
351
Tumor
-0.1
913
Tumor
-0.1
852
Normal
-0.1
484
Normal
-0.1
966
Normal
-0.1
342
Normal
-0.1
686
Normal
-0.1
756
Normal
-0.1
213
Tumor
-0.1
394
Normal
-0.1
1045
Tumor
-0.1
861
Tumor
-0.1
698
Normal
-0.1
975
Tumor
-0.1
112
Tumor
-0.1
984
Normal
-0.1
818
Normal
-0.1
386
Normal
-0.2
923
Tumor
-0.2
814
Normal
-0.2
124
Normal
-0.2
924
Normal
-0.2
916
Normal
-0.2
912
Normal
-0.2
146
Normal
-0.2
1014
Normal
-0.2
444
Normal
-0.2
192
Normal
-0.2
488
Normal
-0.2
777
Tumor
-0.2
978
Normal
-0.2
715
Tumor
-0.2
364
Normal
-0.2
461
Tumor
-0.2
954
Normal
-0.2
447
Tumor
-0.2
813
Tumor
-0.2
223
Tumor
-0.2
515
Tumor
-0.2
492
Normal
-0.2
393
Tumor
-0.2
224
Normal
-0.2
427
Tumor
-0.2
716
Normal
-0.2
313
Tumor
-0.2
737
Tumor
-0.2
953
Tumor
-0.2
982
Normal
-0.2
724
Normal
-0.2
161
Tumor
-0.2
823
Tumor
-0.2
884
Normal
-0.2
137
Tumor
-0.2
498
Normal
-0.2
478
Normal
-0.2
538
Normal
-0.2
535
Tumor
-0.2
384
Normal
-0.2
882
Normal
-0.2
958
Normal
-0.2
375
Tumor
-0.3
516
Normal
-0.3
1015
Tumor
-0.3
487
Tumor
-0.3
493
Tumor
-0.3
957
Tumor
-0.3
415
Tumor
-0.3
463
Tumor
-0.3
395
Tumor
-0.3
573
Tumor
-0.3
497
Tumor
-0.3
483
Tumor
-0.3
524
Normal
-0.3
536
Normal
-0.3
355
Tumor
-0.3
545
Tumor
-0.3
863
Tumor
-0.3
671
Tumor
-0.3
445
Tumor
-0.4
865
Tumor
-0.4
311
Tumor
-0.4
343
Tumor
-0.4
383
Tumor
-0.4
491
Tumor
-0.5
527
Tumor
-0.5
917
Tumor
-0.5
525
Tumor
-0.5
283
Tumor
-0.6
211
Tumor
-0.6
943
Tumor
-0.6
1013
Tumor
-0.6
663
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
