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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM89B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
87.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
65.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
59.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
58.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
49.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
48.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
46.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
43.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
40.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
37.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
36.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
35.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
35.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
28.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM89B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.0
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
85.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
57.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
50.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
48.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
43.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
43.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
716
Normal
1.6
715
Tumor
1.6
686
Normal
1.5
351
Tumor
1.3
262
Normal
1.1
696
Normal
1.1
353
Tumor
1.1
271
Tumor
1.1
695
Tumor
1.0
395
Tumor
0.9
112
Tumor
0.9
956
Normal
0.9
917
Tumor
0.9
368
Normal
0.9
278
Normal
0.9
332
Normal
0.9
124
Normal
0.8
277
Tumor
0.8
192
Normal
0.8
881
Tumor
0.8
114
Normal
0.8
387
Tumor
0.8
744
Normal
0.8
427
Tumor
0.7
413
Tumor
0.7
365
Tumor
0.7
815
Tumor
0.7
126
Normal
0.7
146
Normal
0.7
361
Tumor
0.7
132
Normal
0.6
298
Normal
0.6
272
Normal
0.6
341
Tumor
0.6
628
Normal
0.6
722
Normal
0.6
366
Normal
0.6
627
Tumor
0.6
138
Normal
0.6
376
Normal
0.6
921
Tumor
0.6
814
Normal
0.6
191
Tumor
0.6
232
Normal
0.5
672
Normal
0.5
384
Normal
0.5
314
Normal
0.5
222
Normal
0.5
312
Normal
0.5
195
Tumor
0.5
136
Normal
0.5
268
Normal
0.5
362
Normal
0.5
786
Normal
0.5
221
Tumor
0.5
393
Tumor
0.5
867
Tumor
0.5
451
Tumor
0.5
217
Tumor
0.5
666
Normal
0.5
297
Tumor
0.5
746
Normal
0.5
196
Normal
0.5
868
Normal
0.5
127
Tumor
0.4
857
Tumor
0.4
858
Normal
0.4
267
Tumor
0.4
642
Normal
0.4
385
Tumor
0.4
636
Normal
0.4
866
Normal
0.4
128
Normal
0.4
884
Normal
0.4
721
Tumor
0.4
111
Normal
0.4
648
Normal
0.4
218
Normal
0.4
557
Tumor
0.4
258
Normal
0.4
467
Tumor
0.4
331
Tumor
0.4
662
Normal
0.4
874
Normal
0.3
311
Tumor
0.3
714
Normal
0.3
396
Normal
0.3
391
Tumor
0.3
713
Tumor
0.3
618
Normal
0.3
344
Normal
0.3
664
Normal
0.3
388
Normal
0.3
142
Normal
0.3
914
Normal
0.3
685
Tumor
0.3
383
Tumor
0.3
517
Tumor
0.3
816
Normal
0.3
878
Normal
0.3
213
Tumor
0.3
778
Normal
0.3
342
Normal
0.3
641
Tumor
0.3
513
Tumor
0.3
214
Normal
0.3
671
Tumor
0.3
257
Tumor
0.3
466
Normal
0.2
394
Normal
0.2
514
Normal
0.2
135
Tumor
0.2
425
Tumor
0.2
616
Normal
0.2
141
Tumor
0.2
452
Normal
0.2
912
Normal
0.2
777
Tumor
0.2
813
Tumor
0.2
567
Tumor
0.2
877
Tumor
0.2
862
Normal
0.2
882
Normal
0.2
785
Tumor
0.2
313
Tumor
0.2
741
Tumor
0.2
465
Tumor
0.2
911
Tumor
0.2
367
Tumor
0.2
923
Tumor
0.2
568
Normal
0.2
386
Normal
0.2
663
Tumor
0.2
938
Normal
0.2
571
Tumor
0.2
617
Tumor
0.1
954
Normal
0.1
737
Tumor
0.1
863
Tumor
0.1
515
Tumor
0.1
756
Normal
0.1
723
Tumor
0.1
526
Normal
0.1
738
Normal
0.1
354
Normal
0.1
137
Tumor
0.1
864
Normal
0.1
982
Normal
0.1
1014
Normal
0.0
392
Normal
0.0
615
Tumor
0.0
463
Tumor
0.0
414
Normal
0.0
352
Normal
0.0
572
Normal
0.0
865
Tumor
0.0
665
Tumor
0.0
823
Tumor
0.0
883
Tumor
0.0
428
Normal
0.0
745
Tumor
0.0
343
Tumor
0.0
145
Tumor
0.0
524
Normal
0.0
918
Normal
0.0
817
Tumor
0.0
955
Tumor
0.0
983
Tumor
0.0
564
Normal
-0.1
231
Tumor
-0.1
574
Normal
-0.1
516
Normal
-0.1
755
Tumor
-0.1
375
Tumor
-0.1
661
Tumor
-0.1
423
Tumor
-0.1
518
Normal
-0.1
558
Normal
-0.1
563
Tumor
-0.1
488
Normal
-0.1
1016
Normal
-0.1
498
Normal
-0.1
916
Normal
-0.2
952
Normal
-0.2
125
Tumor
-0.2
984
Normal
-0.2
915
Tumor
-0.2
494
Normal
-0.2
742
Normal
-0.2
944
Normal
-0.2
728
Normal
-0.2
913
Tumor
-0.2
123
Tumor
-0.2
851
Tumor
-0.2
426
Normal
-0.2
922
Normal
-0.2
358
Normal
-0.2
468
Normal
-0.3
261
Tumor
-0.3
497
Tumor
-0.3
493
Tumor
-0.3
484
Normal
-0.3
924
Normal
-0.3
492
Normal
-0.3
635
Tumor
-0.3
647
Tumor
-0.3
873
Tumor
-0.3
525
Tumor
-0.3
464
Normal
-0.3
113
Tumor
-0.3
573
Tumor
-0.3
925
Tumor
-0.3
455
Tumor
-0.3
978
Normal
-0.3
926
Normal
-0.4
724
Normal
-0.4
483
Tumor
-0.4
491
Tumor
-0.4
357
Tumor
-0.4
456
Normal
-0.4
727
Tumor
-0.4
818
Normal
-0.4
824
Normal
-0.4
523
Tumor
-0.5
861
Tumor
-0.5
943
Tumor
-0.5
421
Tumor
-0.5
424
Normal
-0.5
131
Tumor
-0.5
1015
Tumor
-0.5
852
Normal
-0.5
422
Normal
-0.5
951
Tumor
-0.6
743
Tumor
-0.6
487
Tumor
-0.6
977
Tumor
-0.7
953
Tumor
-0.7
1013
Tumor
-0.8
981
Tumor
-0.8
937
Tumor
-1.0
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
957
Tumor
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
527
Tumor
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
433
Tumor
N/A
554
Normal
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
