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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCIM is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
215.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
164.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
128.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
117.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
113.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
111.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
107.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
105.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
105.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
88.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
87.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
85.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
81.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
76.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
75.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
71.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
70.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
68.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
68.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
66.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
65.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
65.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
64.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
63.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
62.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
60.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
60.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
58.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
58.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
57.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
56.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
53.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
53.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
50.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
49.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
48.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
47.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
44.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
42.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
42.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
39.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
37.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
35.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
358
Normal
1.3
955
Tumor
1.1
354
Normal
1.0
352
Normal
1.0
864
Normal
0.9
342
Normal
0.8
232
Normal
0.8
518
Normal
0.8
862
Normal
0.7
866
Normal
0.7
956
Normal
0.7
516
Normal
0.6
944
Normal
0.6
628
Normal
0.6
272
Normal
0.6
286
Normal
0.6
618
Normal
0.6
488
Normal
0.6
546
Normal
0.5
574
Normal
0.5
534
Normal
0.5
514
Normal
0.5
863
Tumor
0.5
568
Normal
0.5
564
Normal
0.4
524
Normal
0.4
636
Normal
0.4
494
Normal
0.4
868
Normal
0.4
526
Normal
0.4
952
Normal
0.4
554
Normal
0.3
954
Normal
0.3
527
Tumor
0.3
484
Normal
0.3
344
Normal
0.2
572
Normal
0.2
528
Normal
0.2
498
Normal
0.2
258
Normal
0.1
497
Tumor
0.1
262
Normal
0.1
228
Normal
0.1
938
Normal
0.1
874
Normal
0.0
517
Tumor
0.0
492
Normal
0.0
483
Tumor
0.0
943
Tumor
0.0
545
Tumor
0.0
353
Tumor
0.0
268
Normal
0.0
563
Tumor
0.0
558
Normal
0.0
617
Tumor
0.0
493
Tumor
-0.1
284
Normal
-0.1
616
Normal
-0.1
212
Normal
-0.1
571
Tumor
-0.2
261
Tumor
-0.2
627
Tumor
-0.2
491
Tumor
-0.2
538
Normal
-0.3
642
Normal
-0.3
525
Tumor
-0.4
567
Tumor
-0.4
487
Tumor
-0.4
557
Tumor
-0.4
343
Tumor
-0.4
224
Normal
-0.5
553
Tumor
-0.5
873
Tumor
-0.5
515
Tumor
-0.5
513
Tumor
-0.5
615
Tumor
-0.5
523
Tumor
-0.5
573
Tumor
-0.5
867
Tumor
-0.5
351
Tumor
-0.6
635
Tumor
-0.6
223
Tumor
-0.8
285
Tumor
-0.8
533
Tumor
-0.9
357
Tumor
-0.9
211
Tumor
-0.9
861
Tumor
-0.9
341
Tumor
-0.9
641
Tumor
-1.0
227
Tumor
-1.1
537
Tumor
-1.2
267
Tumor
-1.3
865
Tumor
-1.3
271
Tumor
-1.3
257
Tumor
-1.4
953
Tumor
-1.5
231
Tumor
-1.7
283
Tumor
-1.9
937
Tumor
-1.9
951
Tumor
-1.9
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
474
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
983
Tumor
N/A
742
Normal
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
1045
Tumor
N/A
744
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
332
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
