MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.0 nTPM
HPA Brain:123.1 nTPM
GTEx:61.0 nTPM
FANTOM5:118.6 Scaled Tags Per Million
Pig:18.4 nTPM
Mouse:1.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 123.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.7
2586 Male, age 75, left hemisphere 188.4
1827 Male, age 72, unknown 109.1
2219 Male, age 76, both hemispheres 106.3
1870 Female, age 42, unknown 105.3
2019 Male, age 18, unknown 104.1
1833 Male, age 53, unknown 98.3
2828 Female, age 72, unknown 98.3
2666 Male, age 74, left hemisphere 94.5
2411 Female, age 72, unknown 94.4
1830 Male, age 51, unknown 88.1
Dorsal raphe nucleus
nTPM: 111.2
2298 Female, age 72, unknown 126.1
2047 Male, age 72, unknown 120.1
1828 Male, age 53, unknown 109.2
2016 Female, age 72, unknown 101.4
2750 Male, age 76, both hemispheres 99.1
Inferior colliculus
nTPM: 115.8
2097 Female, age 72, unknown 124.7
2849 Male, age 72, unknown 121.0
1848 Female, age 42, unknown 111.0
1890 Male, age 53, unknown 106.5
Median raphe nucleus
nTPM: 123.1
2220 Male, age 76, midline 123.1
Periaquaductal grey, anterior
nTPM: 116.9
1795 Male, age 51, unknown 119.5
1947 Male, age 18, unknown 115.6
2502 Female, age 75, unknown 115.6
Periaquaductal grey, dorsal
nTPM: 109.7
1840 Male, age 53, unknown 129.0
2850 Male, age 76, both hemispheres 114.7
1831 Male, age 72, unknown 102.6
2464 Female, age 72, unknown 92.6
Periaquaductal grey, lateral
nTPM: 114.9
2272 Male, age 74, both hemispheres 121.0
2140 Male, age 76, both hemispheres 118.0
2053 Male, age 18, unknown 105.7
Pretectal area
nTPM: 120.8
1816 Male, age 51, unknown 138.5
1944 Female, age 72, unknown 136.6
2007 Male, age 72, unknown 136.3
1817 Female, age 42, unknown 127.7
2667 Female, age 75, unknown 123.7
2224 Female, age 72, unknown 123.6
2273 Male, age 74, both hemispheres 123.1
2825 Male, age 18, unknown 113.7
1815 Male, age 53, unknown 109.9
2407 Male, age 75, both hemispheres 99.1
2316 Male, age 76, right hemisphere 97.0
Red nucleus
nTPM: 92.2
2725 Female, age 75, unknown 104.6
1821 Female, age 72, unknown 104.2
2785 Male, age 18, unknown 103.6
2503 Female, age 72, unknown 97.8
2584 Male, age 75, left hemisphere 96.9
2227 Male, age 72, unknown 92.8
1954 Female, age 42, unknown 91.9
2769 Male, age 72, unknown 89.9
2588 Male, age 74, left hemisphere 87.6
1904 Male, age 53, unknown 84.7
1865 Male, age 51, unknown 79.0
2823 Male, age 76, right hemisphere 73.6
Substantia nigra
nTPM: 111.4
1916 Female, age 42, unknown 137.3
1941 Male, age 53, unknown 132.8
1889 Female, age 72, unknown 124.1
1851 Male, age 51, unknown 120.2
2665 Male, age 74, both hemispheres 106.7
2241 Male, age 72, unknown 105.3
2583 Male, age 75, right hemisphere 104.6
2699 Male, age 18, unknown 99.7
2590 Female, age 75, unknown 96.4
2409 Female, age 72, unknown 86.4
Superior colliculus
nTPM: 104.8
2261 Male, age 18, unknown 120.5
2664 Male, age 75, both hemispheres 116.3
1796 Male, age 53, unknown 114.3
2087 Female, age 72, unknown 110.7
1839 Male, age 51, unknown 109.7
2668 Female, age 75, unknown 102.5
1895 Male, age 76, right hemisphere 100.5
2587 Male, age 74, left hemisphere 97.7
1995 Male, age 72, unknown 88.1
1913 Female, age 42, unknown 87.3
Ventral tegmental area
nTPM: 115.0
2218 Male, age 76, both hemispheres 127.4
1915 Female, age 42, unknown 127.1
1942 Male, age 51, unknown 118.4
2223 Female, age 72, unknown 107.5
2410 Female, age 72, unknown 107.0
2021 Male, age 53, unknown 102.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.0
Samples: 139

Max nTPM: 133.0
Min nTPM: 29.9
Std nTPM: 15.7
Median nTPM: 59.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 133.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 107.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 99.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 97.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 94.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 93.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 92.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 86.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 84.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 84.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 118.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.6
FF:10158-103A5 76 years, female 118.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.1
Samples: 4

Max nTPM: 15.0
Min nTPM: 9.4
Sample A Female 15.0
Sample B Female 9.4
Sample C Male 14.4
Sample D Male 9.6
Midbrain
nTPM: 16.9
Samples: 4

Max nTPM: 21.6
Min nTPM: 12.9
Sample A Female 12.9
Sample B Female 13.4
Sample C Male 19.8
Sample D Male 21.6
Periaqueductal gray
nTPM: 16.2
Samples: 3

Max nTPM: 18.2
Min nTPM: 14.3
Sample B Female 14.3
Sample C Male 18.2
Sample D Male 16.1
Superior colliculi
nTPM: 18.4
Samples: 4

Max nTPM: 20.0
Min nTPM: 14.0
Sample A Female 20.0
Sample B Female 14.0
Sample C Male 19.9
Sample D Male 19.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.3
Sample A Male 2.1
Sample B Male 2.3
Sample C Female 1.3
Sample D Female 1.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69816368 Antisense, RP_050505_04_H06, Mouse strain C57BL/6J (56 days, male) 0.0

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