BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Neuronal projections: Not detected
Synapses: Not detected
RNA expressioni
Consensus:421.2 nTPM
HPA Brain:735.3 nTPM
GTEx:421.2 nTPM
FANTOM5:433.9 Scaled Tags Per Million
Pig:493.7 nTPM
Mouse:1271.4 nTPM
Allen mouse:16.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells0100200300400500600nCPM

CAUDATE - Extended tissue profilei , antibody HPA057790
Glial cells Not detected
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Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

CAUDATE - Antibody stainingi
Antibody HPA057790
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 735.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 643.7
2290 Female, age 72, unknown 849.4
2846 Female, age 79, unknown 792.3
1857 Female, age 85, left hemisphere 791.8
2289 Male, age 61, right hemisphere 739.1
1854 Male, age 80, left hemisphere 614.1
2288 Male, age 75, left hemisphere 525.6
1781 Male, age 74, unknown 439.0
2481 Female, age 94, left hemisphere 398.3
Globus pallidus, externus
nTPM: 214.3
2646 Male, age 61, right hemisphere 339.2
2567 Female, age 72, unknown 231.4
2395 Male, age 75, both hemispheres 178.6
1996 Male, age 80, right hemisphere 167.2
2772 Female, age 79, unknown 155.2
Globus pallidus, internus
nTPM: 175.6
2483 Female, age 94, right hemisphere 296.5
2111 Female, age 85, right hemisphere 188.8
2566 Female, age 72, unknown 169.8
1818 Male, age 74, unknown 152.1
2287 Male, age 75, right hemisphere 151.8
2037 Male, age 80, right hemisphere 140.0
2778 Female, age 91, both hemispheres 130.3
Nucleus accumbens
nTPM: 480.9
2824 Male, age 61, right hemisphere 716.5
1783 Male, age 74, unknown 668.3
1806 Female, age 85, left hemisphere 626.8
1856 Female, age 91, right hemisphere 489.6
2286 Male, age 75, left hemisphere 454.9
2698 Female, age 72, unknown 392.6
2391 Female, age 94, left hemisphere 282.2
2732 Male, age 80, right hemisphere 216.4
Nucleus basalis of Meynert
nTPM: 541.0
2484 Female, age 94, left hemisphere 634.8
2393 Male, age 80, right hemisphere 619.3
2569 Male, age 61, both hemispheres 505.5
2821 Male, age 75, both hemispheres 404.4
Nucleus of the diagonal band
nTPM: 90.6
1812 Female, age 91, both hemispheres 103.8
2029 Male, age 61, right hemisphere 101.7
1979 Male, age 74, unknown 95.9
2195 Female, age 85, both hemispheres 79.3
2775 Male, age 80, right hemisphere 72.1
Putamen
nTPM: 735.3
2489 Female, age 72, unknown 983.4
1829 Male, age 74, unknown 880.4
2647 Male, age 75, left hemisphere 853.5
2466 Female, age 79, unknown 816.2
1838 Male, age 80, right hemisphere 678.7
1937 Female, age 91, right hemisphere 493.6
2482 Female, age 94, left hemisphere 441.3
Septal nuclei
nTPM: 89.4
2394 Male, age 61, left hemisphere 153.8
2059 Female, age 85, both hemispheres 113.7
1960 Male, age 74, unknown 85.7
2629 Female, age 94, right hemisphere 74.3
2031 Female, age 72, unknown 70.8
2009 Female, age 91, both hemispheres 64.1
2199 Male, age 80, right hemisphere 63.1
Stria terminalis, bed nucleus
nTPM: 99.2
2486 Female, age 94, both hemispheres 145.8
2201 Male, age 74, unknown 81.9
1974 Female, age 91, both hemispheres 69.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 421.2
GTEx sample id Sample description nTPM
266.5413.8525.123.1873.70100200300400500600700800900
Brain - Caudate (basal ganglia)
Average nTPM: 403.1
Samples: 300

Max nTPM: 934.1
Min nTPM: 23.1
Std nTPM: 183.2
Median nTPM: 413.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 934.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 873.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 843.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 837.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 836.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 817.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 796.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 779.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 775.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 767.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 756.5
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292.6376.7462.550.2716.40100200300400500600700800
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 378.9
Samples: 285

Max nTPM: 844.3
Min nTPM: 26.7
Std nTPM: 149.0
Median nTPM: 376.7
GTEX-12126-0011-R6b-SM-GIN99 20-29 years, male 844.3
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 788.7
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 769.8
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 752.3
GTEX-1JMQJ-0011-R6b-SM-F3417 50-59 years, male 751.0
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 716.4
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 704.8
GTEX-1JN6P-0011-R6b-SM-F6491 60-69 years, male 699.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 684.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 668.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 666.5
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285.5434.1533.177.1888.701002003004005006007008009001,0001,1001,2001,300
Brain - Putamen (basal ganglia)
Average nTPM: 421.2
Samples: 254

Max nTPM: 1330.1
Min nTPM: 77.1
Std nTPM: 189.9
Median nTPM: 434.0
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 1330.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 993.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 888.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 878.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 816.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 786.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 773.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 769.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 767.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 763.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 755.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 433.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 408.4
FF:10164-103B2 76 years, female 408.4
Nucleus accumbens
Scaled Tags Per Million: 348.1
FF:10037-101F1 23-56 years, mixed 348.1
Putamen
Scaled Tags Per Million: 433.9
FF:10176-103C5 60 years, female 433.9
Globus pallidus
Scaled Tags Per Million: 248.2
FF:10175-103C4 60 years, female 339.0
FF:10161-103A8 76 years, female 157.5

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 493.7
Pig sample Sample description nTPM
450.3503.9547.3341.8625.1050100150200250300350400450500550600
 		Caudate
nTPM: 493.7
Samples: 4

Max nTPM: 625.1
Min nTPM: 341.8
Sample A Female 341.8
Sample B Female 521.4
Sample C Male 625.1
Sample D Male 486.5
447.4552.1585.3544.4661.4050100150200250300350400450500550600650
 		Putamen
nTPM: 480.5
Samples: 4

Max nTPM: 661.4
Min nTPM: 156.3
Sample A Female 156.3
Sample B Female 544.4
Sample C Male 661.4
Sample D Male 559.9
49.8159.9273.648.5285.4020406080100120140160180200220240260280
 		Septum
nTPM: 163.5
Samples: 4

Max nTPM: 285.4
Min nTPM: 48.5
Sample A Female 269.6
Sample B Female 285.4
Sample C Male 48.5
Sample D Male 50.3
298.9363.5375.1354.2381.6050100150200250300350
 		Ventral pallidum
nTPM: 310.4
Samples: 4

Max nTPM: 381.6
Min nTPM: 132.8
Sample A Female 372.9
Sample B Female 381.6
Sample C Male 132.8
Sample D Male 354.2

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 1271.4
Mouse sample Sample description nTPM
1243.01288.31316.71171.51337.201002003004005006007008009001,0001,1001,2001,300
 		Caudate putamen
nTPM: 1271.4
Samples: 4

Max nTPM: 1337.2
Min nTPM: 1171.5
Sample A Male 1266.8
Sample B Male 1337.2
Sample C Female 1171.5
Sample D Female 1309.9
98.7124.3151.692.2162.7020406080100120140160
 		Septum
nTPM: 125.9
Samples: 4

Max nTPM: 162.7
Min nTPM: 92.2
Sample A Male 162.7
Sample B Male 92.2
Sample C Female 100.8
Sample D Female 147.9
557.1564.3600.8556.6571.4050100150200250300350400450500550600650
 		Ventral forebrain
nTPM: 593.6
Samples: 4

Max nTPM: 689.1
Min nTPM: 556.6
Sample A Male 557.3
Sample B Male 556.6
Sample C Female 689.1
Sample D Female 571.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 16.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 16.5
77371857 Antisense, RP_070129_01_B10, Mouse strain C57BL/6J (56 days, male) 19.4
1735 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 13.7
1734 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 7.1
Pallidum
Expression energy: 6.4
1735 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 6.9
77371857 Antisense, RP_070129_01_B10, Mouse strain C57BL/6J (56 days, male) 5.9
1734 Antisense, RP_040507_02_H04, Mouse strain C57BL/6J (56 days, male) 1.9

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