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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
80.7
nTPM
HPA Brain:
171.8
nTPM
GTEx:
80.7
nTPM
FANTOM5:
129.6
Scaled Tags Per Million
Pig:
76.9
nTPM
Mouse:
27.0
nTPM
Allen mouse:
2.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
171.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 143.2
2586
Male, age 75, left hemisphere
197.6
2019
Male, age 18, unknown
187.9
2828
Female, age 72, unknown
152.2
1830
Male, age 51, unknown
138.3
1833
Male, age 53, unknown
136.2
2411
Female, age 72, unknown
131.6
2666
Male, age 74, left hemisphere
127.4
1870
Female, age 42, unknown
124.4
1827
Male, age 72, unknown
118.3
2219
Male, age 76, both hemispheres
118.3
Dorsal raphe nucleus nTPM: 99.8
2750
Male, age 76, both hemispheres
134.5
1828
Male, age 53, unknown
114.9
2016
Female, age 72, unknown
89.4
2047
Male, age 72, unknown
87.9
2298
Female, age 72, unknown
72.2
Inferior colliculus nTPM: 115.5
1890
Male, age 53, unknown
151.1
2097
Female, age 72, unknown
113.3
1848
Female, age 42, unknown
103.0
2849
Male, age 72, unknown
94.7
Median raphe nucleus nTPM: 90.4
2220
Male, age 76, midline
90.4
Periaquaductal grey, anterior nTPM: 92.8
2502
Female, age 75, unknown
106.9
1795
Male, age 51, unknown
94.8
1947
Male, age 18, unknown
76.7
Periaquaductal grey, dorsal nTPM: 74.7
2464
Female, age 72, unknown
99.5
1831
Male, age 72, unknown
87.9
1840
Male, age 53, unknown
61.1
2850
Male, age 76, both hemispheres
50.4
Periaquaductal grey, lateral nTPM: 71.4
2053
Male, age 18, unknown
84.6
2272
Male, age 74, both hemispheres
81.8
2140
Male, age 76, both hemispheres
47.7
Pretectal area nTPM: 114.5
1817
Female, age 42, unknown
158.5
2007
Male, age 72, unknown
144.9
1815
Male, age 53, unknown
143.5
1816
Male, age 51, unknown
139.0
1944
Female, age 72, unknown
133.0
2667
Female, age 75, unknown
118.8
2407
Male, age 75, both hemispheres
118.6
2316
Male, age 76, right hemisphere
82.2
2825
Male, age 18, unknown
80.2
2273
Male, age 74, both hemispheres
76.8
2224
Female, age 72, unknown
64.2
Red nucleus nTPM: 171.8
2823
Male, age 76, right hemisphere
193.0
2588
Male, age 74, left hemisphere
192.5
2584
Male, age 75, left hemisphere
183.9
1904
Male, age 53, unknown
183.8
2785
Male, age 18, unknown
183.2
2227
Male, age 72, unknown
181.8
2769
Male, age 72, unknown
177.7
1865
Male, age 51, unknown
174.0
1821
Female, age 72, unknown
165.0
2503
Female, age 72, unknown
163.4
1954
Female, age 42, unknown
154.0
2725
Female, age 75, unknown
108.8
Substantia nigra nTPM: 120.8
2583
Male, age 75, right hemisphere
168.9
2665
Male, age 74, both hemispheres
152.3
1889
Female, age 72, unknown
126.5
1851
Male, age 51, unknown
119.2
2590
Female, age 75, unknown
119.1
1916
Female, age 42, unknown
117.1
2699
Male, age 18, unknown
112.2
2409
Female, age 72, unknown
101.6
1941
Male, age 53, unknown
100.6
2241
Male, age 72, unknown
90.2
Superior colliculus nTPM: 125.0
2668
Female, age 75, unknown
153.4
1995
Male, age 72, unknown
143.8
2664
Male, age 75, both hemispheres
143.6
2087
Female, age 72, unknown
132.9
1913
Female, age 42, unknown
132.3
2261
Male, age 18, unknown
122.3
2587
Male, age 74, left hemisphere
118.5
1839
Male, age 51, unknown
105.9
1796
Male, age 53, unknown
102.0
1895
Male, age 76, right hemisphere
95.3
Ventral tegmental area nTPM: 115.7
2223
Female, age 72, unknown
180.9
2410
Female, age 72, unknown
128.5
2218
Male, age 76, both hemispheres
100.8
1942
Male, age 51, unknown
99.5
1915
Female, age 42, unknown
96.2
2021
Male, age 53, unknown
88.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 80.7
Samples: 139
Max nTPM: 205.3
Min nTPM: 25.6
Std nTPM: 25.7
Median nTPM: 78.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
205.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
189.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
139.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
129.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
126.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
123.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
123.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
117.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
117.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
117.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
115.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
115.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
113.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
110.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
108.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
106.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
106.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
105.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
104.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
103.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
103.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
103.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
101.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
100.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
99.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
99.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
98.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
98.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
98.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
97.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
96.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
96.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
93.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
93.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
92.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
92.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
92.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
91.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
90.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
89.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
89.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
89.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
89.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
89.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
88.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
88.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
87.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
87.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
87.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
87.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
86.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
86.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
85.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
85.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
84.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
84.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
84.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
84.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
83.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
83.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
82.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
80.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
80.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
79.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
79.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
79.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
79.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
79.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
78.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
78.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
78.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
77.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
77.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
76.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
76.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
76.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
76.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
75.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
75.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
75.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
74.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
74.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
74.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
73.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
73.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
73.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
73.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
73.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
72.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
72.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
71.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
70.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
70.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
70.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
70.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
69.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
68.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
68.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
68.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
65.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
65.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
65.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
65.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
64.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
64.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
62.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
61.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
61.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
61.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
60.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
60.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
59.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
59.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
59.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
59.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
58.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
57.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
56.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
56.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
56.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
55.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
54.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
54.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
53.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
53.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
53.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
52.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
52.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
51.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
47.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
43.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
43.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
42.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
40.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
37.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
36.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
35.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
32.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
25.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 27.1
Samples: 4
Max nTPM: 28.0
Min nTPM: 25.6
Sample A
Male
28.0
Sample B
Male
25.6
Sample C
Female
28.0
Sample D
Female
26.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.