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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
135.6
Sample id
Sample description
nTPM
Amygdala nTPM: 120.9
2814
Male, age 76, right hemisphere
180.6
2695
Female, age 67, right hemisphere
124.2
2517
Female, age 94, left hemisphere
114.2
2514
Male, age 75, right hemisphere
102.7
1987
Female, age 91, left hemisphere
82.9
Basal amygdala nTPM: 126.2
2827
Female, age 67, right hemisphere
151.8
2609
Male, age 75, right hemisphere
142.5
1955
Male, age 76, both hemispheres
131.3
2685
Female, age 94, left hemisphere
129.0
2110
Male, age 80, left hemisphere
103.7
2243
Female, age 91, right hemisphere
99.3
Central amygdala nTPM: 120.8
1905
Male, age 76, both hemispheres
158.5
2826
Female, age 94, left hemisphere
144.5
2515
Male, age 75, right hemisphere
115.8
2239
Male, age 80, left hemisphere
97.1
2701
Female, age 91, right hemisphere
87.9
Corticomedial amygdala nTPM: 108.5
2428
Male, age 75, right hemisphere
132.3
2829
Male, age 80, left hemisphere
110.1
2535
Female, age 67, right hemisphere
108.2
2240
Male, age 76, both hemispheres
104.7
2242
Female, age 91, right hemisphere
98.0
2429
Female, age 94, left hemisphere
97.9
Lateral amygdala nTPM: 135.6
1883
Male, age 76, both hemispheres
166.6
2830
Female, age 67, right hemisphere
153.8
2256
Male, age 80, left hemisphere
132.5
2516
Male, age 75, right hemisphere
130.9
2534
Female, age 94, left hemisphere
124.0
2255
Female, age 91, right hemisphere
105.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
83.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 83.2
Samples: 152
Max nTPM: 167.4
Min nTPM: 3.7
Std nTPM: 25.1
Median nTPM: 78.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
167.4
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
154.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
154.7
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
142.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
134.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
132.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
132.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
132.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
125.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
120.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
120.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
118.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
117.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
117.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
115.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
114.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
114.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
113.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
112.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
112.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
111.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
110.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
109.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
109.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
108.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
108.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
108.1
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
107.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
106.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
106.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
105.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
105.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
105.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
101.8
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
100.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
100.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
97.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
97.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
96.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
96.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
95.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
95.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
94.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
94.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
93.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
92.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
90.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
90.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
90.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
90.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
89.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
89.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
88.8
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
88.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
88.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
88.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
87.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
87.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
87.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
86.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
85.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
85.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
85.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
85.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
84.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
83.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
82.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
82.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
82.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
82.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
81.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
81.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
80.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
80.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
80.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
78.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
78.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
78.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
77.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
77.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
77.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
77.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
77.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
77.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
76.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
76.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
76.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
76.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
75.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
75.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
75.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
74.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
74.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
74.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
73.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
73.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
72.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
72.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
71.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
71.6
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
71.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
71.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
70.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
70.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
70.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
69.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
69.2
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
68.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
68.8
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
68.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
68.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
67.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
67.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
67.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
66.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
66.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
64.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
64.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
64.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
62.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
62.3
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
62.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
61.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
61.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
61.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
61.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
60.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
60.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
60.5
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
60.2
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
59.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
58.9
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
58.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
58.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
58.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
58.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
56.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
56.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
55.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
54.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
54.7
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
54.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
54.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
53.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
51.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
49.4
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
44.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
44.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
39.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
36.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
22.3
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
3.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
201.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 201.5
Samples: 4
Max nTPM: 287.8
Min nTPM: 132.5
Sample A
Male
132.5
Sample B
Male
184.8
Sample C
Female
287.8
Sample D
Female
201.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.