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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
149.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 149.0
2301
Female, age 85, both hemispheres
188.1
2090
Male, age 80, both hemispheres
148.5
2188
Female, age 91, both hemispheres
138.6
1984
Male, age 76, both hemispheres
120.9
Dorsal cochlear nucleus nTPM: 142.5
2802
Male, age 74, right hemisphere
177.3
2378
Male, age 80, both hemispheres
154.0
2187
Female, age 91, both hemispheres
152.8
2370
Male, age 61, both hemispheres
128.5
2058
Male, age 76, both hemispheres
100.1
Dorsal tegmental nucleus nTPM: 113.8
2083
Male, age 80, both hemispheres
139.9
2326
Male, age 74, both hemispheres
136.3
1936
Male, age 76, left hemisphere
102.2
2358
Male, age 61, both hemispheres
76.6
Dorsolateral tegmental area nTPM: 108.4
2751
Female, age 85, both hemispheres
149.4
2654
Male, age 80, both hemispheres
132.7
2360
Male, age 74, both hemispheres
94.6
2337
Male, age 61, both hemispheres
92.9
2141
Male, age 76, both hemispheres
72.2
Kolliker-Fuse nucleus nTPM: 119.4
2793
Female, age 91, left hemisphere
156.3
2163
Male, age 80, both hemispheres
123.2
2315
Male, age 76, right hemisphere
78.7
Lateral lemniscal nuclei nTPM: 119.0
2320
Female, age 91, left hemisphere
147.4
2453
Male, age 74, right hemisphere
137.0
2169
Male, age 76, both hemispheres
111.2
2036
Male, age 80, both hemispheres
100.1
2746
Female, age 85, left hemisphere
99.5
Lateral parabrachial nucleus nTPM: 103.8
2792
Male, age 76, both hemispheres
133.2
2013
Male, age 80, both hemispheres
119.6
2790
Male, age 61, both hemispheres
83.5
2139
Female, age 85, right hemisphere
79.0
Lateral vestibular nucleus nTPM: 148.0
2311
Male, age 80, both hemispheres
171.6
2184
Male, age 76, both hemispheres
124.4
Locus coeruleus nTPM: 72.7
2720
Male, age 74, both hemispheres
92.6
2162
Male, age 80, both hemispheres
87.0
2317
Female, age 72, unknown
81.2
2123
Female, age 91, both hemispheres
71.4
2014
Male, age 55, unknown
62.8
2788
Male, age 74, unknown
61.5
1980
Male, age 76, both hemispheres
52.1
Medial parabrachial nucleus nTPM: 133.2
2170
Female, age 91, both hemispheres
180.9
2463
Female, age 85, right hemisphere
146.5
2854
Male, age 80, both hemispheres
130.8
2786
Male, age 76, both hemispheres
119.7
2156
Male, age 61, both hemispheres
88.4
Medial periolivary nuclei nTPM: 121.7
2458
Female, age 91, both hemispheres
163.4
2081
Male, age 80, both hemispheres
139.5
2791
Male, age 74, right hemisphere
106.3
2063
Male, age 76, both hemispheres
99.8
2171
Female, age 85, both hemispheres
99.5
Motor facial nucleus nTPM: 131.1
2795
Female, age 91, both hemispheres
190.9
2126
Male, age 61, both hemispheres
146.1
2365
Male, age 74, right hemisphere
117.8
2697
Female, age 85, both hemispheres
117.4
2327
Male, age 80, both hemispheres
114.3
2062
Male, age 76, both hemispheres
100.0
Motor trigeminal nucleus nTPM: 129.4
2321
Female, age 91, both hemispheres
176.2
2560
Male, age 74, both hemispheres
146.9
2079
Male, age 80, both hemispheres
108.9
2309
Male, age 76, both hemispheres
107.5
2335
Male, age 61, both hemispheres
107.2
Nuclei of the trapezoid body nTPM: 117.1
2368
Female, age 91, both hemispheres
163.1
2166
Male, age 80, both hemispheres
143.5
2159
Male, age 61, both hemispheres
95.3
2735
Female, age 85, both hemispheres
92.1
1983
Male, age 76, both hemispheres
91.7
Nucleus raphe magnus nTPM: 111.8
2459
Female, age 91, both hemispheres
158.1
2328
Male, age 80, both hemispheres
121.9
2051
Male, age 76, both hemispheres
120.2
2455
Male, age 74, both hemispheres
106.3
2172
Female, age 85, both hemispheres
86.4
2160
Male, age 61, both hemispheres
78.1
Paramedian reticular nucleus nTPM: 108.8
2057
Male, age 80, both hemispheres
121.9
2052
Male, age 76, both hemispheres
119.0
2050
Female, age 85, both hemispheres
101.8
2313
Male, age 61, both hemispheres
92.3
Pedunculopontine tegmental nucleus nTPM: 93.6
2334
Male, age 80, both hemispheres
107.5
1921
Female, age 85, both hemispheres
90.9
2338
Male, age 61, both hemispheres
82.4
Pontine nuclei nTPM: 120.6
2319
Female, age 91, both hemispheres
146.2
2454
Male, age 74, left hemisphere
133.8
2115
Male, age 80, left hemisphere
130.1
2109
Female, age 72, unknown
127.2
1968
Male, age 76, left hemisphere
125.8
1863
Male, age 55, unknown
124.0
2787
Female, age 85, both hemispheres
95.2
2727
Male, age 61, right hemisphere
82.8
Pontine raphe nucleus nTPM: 86.4
2122
Female, age 85, midline
91.3
2853
Male, age 76, midline
81.6
Posteroventral cochlear nucleus nTPM: 130.6
2341
Male, age 80, both hemispheres
175.4
2371
Male, age 61, both hemispheres
141.5
2135
Female, age 91, both hemispheres
129.7
2070
Male, age 76, both hemispheres
116.2
2752
Female, age 85, both hemispheres
90.3
Principal sensory trigeminal nucleus nTPM: 115.9
2367
Female, age 91, left hemisphere
158.3
2324
Male, age 76, both hemispheres
119.0
2008
Male, age 80, left hemisphere
97.7
2158
Male, age 61, both hemispheres
88.4
Reticular pontine nucleus, caudal nTPM: 139.2
2457
Female, age 91, both hemispheres
175.7
2559
Male, age 74, both hemispheres
149.5
2332
Male, age 80, right hemisphere
124.5
2092
Male, age 76, both hemispheres
107.3
Reticular pontine nucleus, oral nTPM: 127.1
2361
Male, age 74, both hemispheres
142.2
2366
Female, age 91, both hemispheres
140.9
1939
Male, age 80, both hemispheres
127.3
2167
Male, age 76, both hemispheres
118.5
2012
Female, age 85, both hemispheres
106.5
Reticulotegmental nucleus nTPM: 149.7
2322
Female, age 91, both hemispheres
203.7
2452
Male, age 74, both hemispheres
158.2
2333
Male, age 80, both hemispheres
145.7
2325
Male, age 76, both hemispheres
91.2
Spinal trigeminal nucleus, oral nTPM: 121.1
2164
Male, age 80, both hemispheres
156.0
1978
Male, age 76, both hemispheres
111.8
2737
Female, age 85, both hemispheres
95.3
Subcoeruleus area nTPM: 122.1
2369
Female, age 85, left hemisphere
162.8
2451
Male, age 74, both hemispheres
125.8
2089
Male, age 76, left hemisphere
123.3
1958
Male, age 80, both hemispheres
109.2
2323
Female, age 91, left hemisphere
89.5
Superior olive nTPM: 125.2
2561
Female, age 91, both hemispheres
163.2
2329
Male, age 80, right hemisphere
138.4
2020
Male, age 76, both hemispheres
126.3
2364
Male, age 74, right hemisphere
107.5
1875
Female, age 85, both hemispheres
90.6
Ventral periolivary nuclei nTPM: 113.8
2794
Female, age 91, left hemisphere
131.5
2165
Male, age 80, both hemispheres
123.2
2023
Male, age 76, both hemispheres
110.4
2130
Female, age 85, both hemispheres
90.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 123.9
2456
Female, age 91, both hemispheres
185.5
2161
Male, age 80, both hemispheres
127.2
2449
Male, age 74, both hemispheres
117.9
2840
Female, age 85, both hemispheres
111.5
1959
Male, age 76, both hemispheres
106.7
2359
Male, age 61, both hemispheres
94.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.2
Pig sample
Sample description
nTPM
Pons nTPM: 59.2
Samples: 4
Max nTPM: 79.0
Min nTPM: 45.2
Sample A
Female
53.2
Sample B
Female
45.2
Sample C
Male
59.5
Sample D
Male
79.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.