BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:81.8 nTPM
HPA Brain:47.3 nTPM
GTEx:81.8 nTPM
FANTOM5:204.5 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:117.4 nTPM
Allen mouse:5.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037439
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 47.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.0
2846 Female, age 79, unknown 44.2
2481 Female, age 94, left hemisphere 43.7
1781 Male, age 74, unknown 42.8
2290 Female, age 72, unknown 40.0
2289 Male, age 61, right hemisphere 38.8
2288 Male, age 75, left hemisphere 37.6
1857 Female, age 85, left hemisphere 36.7
1854 Male, age 80, left hemisphere 36.2
Globus pallidus, externus
nTPM: 47.3
2567 Female, age 72, unknown 53.0
1996 Male, age 80, right hemisphere 49.4
2646 Male, age 61, right hemisphere 47.5
2772 Female, age 79, unknown 44.1
2395 Male, age 75, both hemispheres 42.4
Globus pallidus, internus
nTPM: 45.3
2111 Female, age 85, right hemisphere 47.0
2037 Male, age 80, right hemisphere 46.1
2483 Female, age 94, right hemisphere 46.1
2566 Female, age 72, unknown 45.5
2287 Male, age 75, right hemisphere 45.0
2778 Female, age 91, both hemispheres 43.7
1818 Male, age 74, unknown 43.4
Nucleus accumbens
nTPM: 36.8
2391 Female, age 94, left hemisphere 41.7
2698 Female, age 72, unknown 38.4
2732 Male, age 80, right hemisphere 38.4
1783 Male, age 74, unknown 37.3
2286 Male, age 75, left hemisphere 37.2
1806 Female, age 85, left hemisphere 36.2
1856 Female, age 91, right hemisphere 34.0
2824 Male, age 61, right hemisphere 30.9
Nucleus basalis of Meynert
nTPM: 41.5
2569 Male, age 61, both hemispheres 52.1
2484 Female, age 94, left hemisphere 40.1
2821 Male, age 75, both hemispheres 39.1
2393 Male, age 80, right hemisphere 34.9
Nucleus of the diagonal band
nTPM: 36.3
1812 Female, age 91, both hemispheres 38.1
2195 Female, age 85, both hemispheres 37.3
2775 Male, age 80, right hemisphere 35.9
1979 Male, age 74, unknown 35.6
2029 Male, age 61, right hemisphere 34.4
Putamen
nTPM: 41.3
2489 Female, age 72, unknown 49.7
2647 Male, age 75, left hemisphere 47.0
2482 Female, age 94, left hemisphere 42.5
1829 Male, age 74, unknown 41.2
2466 Female, age 79, unknown 40.9
1838 Male, age 80, right hemisphere 34.4
1937 Female, age 91, right hemisphere 33.7
Septal nuclei
nTPM: 39.5
2394 Male, age 61, left hemisphere 43.5
2199 Male, age 80, right hemisphere 42.1
2031 Female, age 72, unknown 39.3
2629 Female, age 94, right hemisphere 39.3
1960 Male, age 74, unknown 38.9
2059 Female, age 85, both hemispheres 38.0
2009 Female, age 91, both hemispheres 35.6
Stria terminalis, bed nucleus
nTPM: 34.8
2201 Male, age 74, unknown 36.6
1974 Female, age 91, both hemispheres 35.0
2486 Female, age 94, both hemispheres 32.8

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 81.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 74.3
Samples: 246

Max nTPM: 109.8
Min nTPM: 40.8
Std nTPM: 12.6
Median nTPM: 74.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 109.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 109.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 108.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 107.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 107.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 104.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 103.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 103.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 101.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 100.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 98.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 70.2
Samples: 246

Max nTPM: 132.5
Min nTPM: 41.2
Std nTPM: 13.8
Median nTPM: 69.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 132.5
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 106.6
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 106.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 103.8
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 103.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 102.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 101.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 100.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 99.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 97.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 96.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 81.8
Samples: 205

Max nTPM: 128.8
Min nTPM: 42.8
Std nTPM: 12.7
Median nTPM: 81.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 128.8
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 116.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 114.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 113.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 108.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 108.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 107.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 105.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 104.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 104.5
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 103.5
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 204.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 134.5
FF:10164-103B2 76 years, female 134.5
Nucleus accumbens
Scaled Tags Per Million: 136.6
FF:10037-101F1 23-56 years, mixed 136.6
Putamen
Scaled Tags Per Million: 150.3
FF:10176-103C5 60 years, female 150.3
Globus pallidus
Scaled Tags Per Million: 204.5
FF:10175-103C4 60 years, female 233.8
FF:10161-103A8 76 years, female 175.3

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 42.8
Pig sample Sample description nTPM
Caudate
nTPM: 38.5
Samples: 4

Max nTPM: 42.1
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 42.1
Sample C Male 41.3
Sample D Male 37.8
Putamen
nTPM: 42.9
Samples: 4

Max nTPM: 47.9
Min nTPM: 36.8
Sample A Female 41.4
Sample B Female 36.8
Sample C Male 47.9
Sample D Male 45.3
Septum
nTPM: 38.4
Samples: 4

Max nTPM: 41.7
Min nTPM: 37.0
Sample A Female 41.7
Sample B Female 37.4
Sample C Male 37.4
Sample D Male 37.0
Ventral pallidum
nTPM: 39.1
Samples: 4

Max nTPM: 45.7
Min nTPM: 29.6
Sample A Female 29.6
Sample B Female 41.0
Sample C Male 45.7
Sample D Male 40.2

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 117.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 117.4
Samples: 4

Max nTPM: 126.8
Min nTPM: 105.0
Sample A Male 117.2
Sample B Male 105.0
Sample C Female 120.7
Sample D Female 126.8
Septum
nTPM: 83.4
Samples: 4

Max nTPM: 89.1
Min nTPM: 70.7
Sample A Male 70.7
Sample B Male 86.5
Sample C Female 89.1
Sample D Female 87.3
Ventral forebrain
nTPM: 99.8
Samples: 4

Max nTPM: 117.2
Min nTPM: 92.1
Sample A Male 92.1
Sample B Male 95.4
Sample C Female 117.2
Sample D Female 94.4

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.7
70473867 Antisense, RP_050614_04_D08, Mouse strain C57BL/6J (56 days, male) 5.7
Pallidum
Expression energy: 2.4
70473867 Antisense, RP_050614_04_D08, Mouse strain C57BL/6J (56 days, male) 2.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org