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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPN2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
64.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
55.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
49.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
42.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
34.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPN2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
65.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
62.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
60.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
29.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.0
965
Tumor
0.9
917
Tumor
0.8
661
Tumor
0.8
311
Tumor
0.7
724
Normal
0.7
535
Tumor
0.6
211
Tumor
0.6
967
Tumor
0.6
641
Tumor
0.6
978
Normal
0.6
851
Tumor
0.6
125
Tumor
0.6
217
Tumor
0.5
1021
Tumor
0.5
865
Tumor
0.5
213
Tumor
0.5
131
Tumor
0.5
283
Tumor
0.5
467
Tumor
0.5
523
Tumor
0.5
642
Normal
0.5
525
Tumor
0.5
463
Tumor
0.5
567
Tumor
0.5
195
Tumor
0.5
573
Tumor
0.5
435
Tumor
0.5
983
Tumor
0.4
695
Tumor
0.4
713
Tumor
0.4
1031
Tumor
0.4
517
Tumor
0.4
447
Tumor
0.4
262
Normal
0.4
545
Tumor
0.4
327
Tumor
0.4
413
Tumor
0.4
524
Normal
0.4
943
Tumor
0.4
391
Tumor
0.4
975
Tumor
0.4
536
Normal
0.3
434
Normal
0.3
877
Tumor
0.3
727
Tumor
0.3
191
Tumor
0.3
285
Tumor
0.3
737
Tumor
0.3
411
Tumor
0.3
268
Normal
0.3
1013
Tumor
0.3
368
Normal
0.3
192
Normal
0.3
966
Normal
0.3
814
Normal
0.3
963
Tumor
0.3
478
Normal
0.3
147
Tumor
0.3
385
Tumor
0.3
113
Tumor
0.3
937
Tumor
0.3
957
Tumor
0.3
921
Tumor
0.3
953
Tumor
0.3
533
Tumor
0.3
188
Normal
0.3
375
Tumor
0.2
362
Normal
0.2
881
Tumor
0.2
331
Tumor
0.2
492
Normal
0.2
498
Normal
0.2
817
Tumor
0.2
1014
Normal
0.2
493
Tumor
0.2
647
Tumor
0.2
277
Tumor
0.2
444
Normal
0.2
365
Tumor
0.2
343
Tumor
0.2
218
Normal
0.2
297
Tumor
0.2
312
Normal
0.2
267
Tumor
0.2
366
Normal
0.2
923
Tumor
0.2
1016
Normal
0.2
984
Normal
0.2
186
Normal
0.2
272
Normal
0.2
615
Tumor
0.2
1044
Normal
0.2
415
Tumor
0.2
355
Tumor
0.1
914
Normal
0.1
777
Tumor
0.1
123
Tumor
0.1
187
Tumor
0.1
912
Normal
0.1
455
Tumor
0.1
172
Normal
0.1
232
Normal
0.1
926
Normal
0.1
412
Normal
0.1
224
Normal
0.1
491
Tumor
0.1
743
Tumor
0.1
951
Tumor
0.1
367
Tumor
0.1
1025
Tumor
0.1
221
Tumor
0.1
212
Normal
0.1
534
Normal
0.1
332
Normal
0.1
786
Normal
0.1
696
Normal
0.1
384
Normal
0.1
514
Normal
0.1
916
Normal
0.1
376
Normal
0.1
427
Tumor
0.1
528
Normal
0.1
564
Normal
0.1
628
Normal
0.1
513
Tumor
0.1
526
Normal
0.1
258
Normal
0.1
1046
Normal
0.1
341
Tumor
0.1
686
Normal
0.1
161
Tumor
0.1
364
Normal
0.1
728
Normal
0.1
386
Normal
0.1
982
Normal
0.1
617
Tumor
0.1
271
Tumor
0.1
861
Tumor
0.1
162
Normal
0.1
314
Normal
0.1
813
Tumor
0.1
857
Tumor
0.1
742
Normal
0.1
745
Tumor
0.1
126
Normal
0.1
388
Normal
0.1
527
Tumor
0.1
361
Tumor
0.1
392
Normal
0.1
866
Normal
0.1
432
Normal
0.1
446
Normal
0.1
1043
Tumor
0.1
328
Normal
0.1
1042
Normal
0.1
778
Normal
0.1
538
Normal
0.1
863
Tumor
0.1
223
Tumor
0.1
968
Normal
0.1
383
Tumor
0.1
568
Normal
0.1
436
Normal
0.1
882
Normal
0.1
145
Tumor
0.1
396
Normal
0.1
884
Normal
0.0
546
Normal
0.0
356
Normal
0.0
558
Normal
0.0
214
Normal
0.0
518
Normal
0.0
445
Tumor
0.0
666
Normal
0.0
471
Tumor
0.0
222
Normal
0.0
741
Tumor
0.0
738
Normal
0.0
416
Normal
0.0
755
Tumor
0.0
228
Normal
0.0
286
Normal
0.0
662
Normal
0.0
976
Normal
0.0
448
Normal
0.0
422
Normal
0.0
148
Normal
0.0
918
Normal
0.0
387
Tumor
0.0
874
Normal
0.0
574
Normal
0.0
132
Normal
0.0
428
Normal
0.0
424
Normal
0.0
516
Normal
0.0
873
Tumor
0.0
395
Tumor
0.0
363
Tumor
0.0
868
Normal
0.0
257
Tumor
0.0
1026
Normal
0.0
714
Normal
0.0
461
Tumor
0.0
484
Normal
0.0
421
Tumor
0.0
537
Tumor
0.0
672
Normal
0.0
1032
Normal
0.0
433
Tumor
0.0
313
Tumor
0.0
557
Tumor
0.0
284
Normal
0.0
756
Normal
0.0
572
Normal
0.0
721
Tumor
0.0
956
Normal
0.0
938
Normal
0.0
472
Normal
0.0
723
Tumor
0.0
394
Normal
0.0
425
Tumor
0.0
494
Normal
0.0
618
Normal
0.0
482
Normal
0.0
462
Normal
0.0
697
Tumor
0.0
196
Normal
0.0
393
Tumor
0.0
664
Normal
0.0
142
Normal
0.0
351
Tumor
0.0
815
Tumor
0.0
298
Normal
0.0
352
Normal
0.0
474
Normal
0.0
698
Normal
0.0
138
Normal
0.0
922
Normal
0.0
816
Normal
0.0
818
Normal
0.0
1015
Tumor
0.0
952
Normal
0.0
1045
Tumor
0.0
358
Normal
0.0
616
Normal
0.0
278
Normal
0.0
715
Tumor
0.0
357
Tumor
-0.1
456
Normal
-0.1
944
Normal
-0.1
981
Tumor
-0.1
111
Normal
-0.1
883
Tumor
-0.1
862
Normal
-0.1
127
Tumor
-0.1
878
Normal
-0.1
1028
Normal
-0.1
964
Normal
-0.1
426
Normal
-0.1
114
Normal
-0.1
746
Normal
-0.1
954
Normal
-0.1
648
Normal
-0.1
136
Normal
-0.1
146
Normal
-0.1
636
Normal
-0.1
864
Normal
-0.1
141
Tumor
-0.1
128
Normal
-0.1
955
Tumor
-0.1
858
Normal
-0.1
124
Normal
-0.1
1022
Normal
-0.1
185
Tumor
-0.1
414
Normal
-0.1
473
Tumor
-0.1
464
Normal
-0.1
468
Normal
-0.1
353
Tumor
-0.1
423
Tumor
-0.1
635
Tumor
-0.1
716
Normal
-0.1
744
Normal
-0.1
563
Tumor
-0.1
553
Tumor
-0.1
354
Normal
-0.1
722
Normal
-0.1
488
Normal
-0.1
958
Normal
-0.1
112
Tumor
-0.1
451
Tumor
-0.1
977
Tumor
-0.1
852
Normal
-0.1
824
Normal
-0.1
477
Tumor
-0.1
481
Tumor
-0.2
924
Normal
-0.2
571
Tumor
-0.2
487
Tumor
-0.2
627
Tumor
-0.2
867
Tumor
-0.2
135
Tumor
-0.2
554
Normal
-0.2
466
Normal
-0.2
344
Normal
-0.2
431
Tumor
-0.2
915
Tumor
-0.2
671
Tumor
-0.2
227
Tumor
-0.2
823
Tumor
-0.2
261
Tumor
-0.2
913
Tumor
-0.2
663
Tumor
-0.2
465
Tumor
-0.2
171
Tumor
-0.3
452
Normal
-0.3
515
Tumor
-0.3
443
Tumor
-0.3
342
Normal
-0.3
785
Tumor
-0.3
685
Tumor
-0.3
137
Tumor
-0.3
911
Tumor
-0.3
483
Tumor
-0.4
665
Tumor
-0.4
231
Tumor
-0.4
1027
Tumor
-0.5
1041
Tumor
-0.6
925
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
