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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMD2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
233.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
224.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
215.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
187.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
176.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
146.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
144.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
134.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
133.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
125.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
125.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
116.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
115.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
111.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
106.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
105.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
103.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
102.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
102.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
101.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
101.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
100.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
97.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
97.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
96.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
92.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
91.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
91.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
89.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
88.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
88.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
87.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
87.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
87.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
87.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
84.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
84.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
84.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
84.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
84.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
84.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
82.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
82.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
82.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
82.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
81.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
81.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
80.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
80.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
80.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
80.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
80.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
79.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
78.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
77.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
77.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
76.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
76.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
75.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
75.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
74.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
74.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
73.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
73.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
72.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
72.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
72.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
72.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
72.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
72.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
71.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
71.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
70.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
69.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
69.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
68.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
68.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
68.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
68.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
68.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
68.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
67.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
67.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
66.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
66.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
66.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
66.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
66.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
66.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
65.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
64.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
64.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
64.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
63.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
63.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
63.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
62.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
62.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
62.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
62.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
62.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
62.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
61.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
60.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
60.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
60.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
60.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
60.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
60.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
60.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
60.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
60.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
60.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
59.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
59.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
59.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
59.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
59.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
58.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
58.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
58.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
58.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
57.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
57.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
57.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
56.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
56.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
56.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
56.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
56.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
55.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
55.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
55.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
54.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
54.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
54.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
54.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
54.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
53.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
53.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
53.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
53.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
53.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
52.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
51.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
51.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
51.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
51.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
50.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
49.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
49.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
48.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
48.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
48.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
47.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
47.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
47.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
46.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
46.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
46.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
46.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
46.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
46.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
45.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
45.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
45.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
45.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
45.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
45.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
44.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
44.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
42.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
42.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
42.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
41.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
41.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
41.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
41.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
40.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
40.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
39.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
39.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
39.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
38.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
38.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
35.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
35.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
35.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
35.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
34.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
34.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
32.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
31.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
28.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
24.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMD2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.1
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
169.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
141.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
131.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
110.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
108.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
105.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
103.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
102.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
100.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
94.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
92.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
92.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
91.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
89.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
88.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
87.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
80.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
79.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
79.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
78.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
77.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
77.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
76.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
75.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
75.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
74.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
73.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
72.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
72.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
71.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
70.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
70.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
69.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
68.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
68.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
67.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
67.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
66.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
65.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
65.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
65.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
65.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
64.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
63.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
63.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
62.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
61.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
61.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
61.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
61.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
60.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
60.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
59.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
59.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
59.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
58.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
58.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
57.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
56.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
56.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
56.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
56.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
55.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
55.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
55.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
55.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
54.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
54.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
54.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
54.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
54.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
54.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
53.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
53.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
52.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
51.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
51.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
51.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
50.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
50.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
50.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
50.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
50.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
50.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
50.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
50.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
49.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
49.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
48.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
48.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
47.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
47.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
47.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
47.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
47.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
47.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
46.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
45.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
45.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
44.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
44.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
44.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
44.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
43.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
43.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
42.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
42.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
42.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
42.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
42.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
42.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
41.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
41.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
41.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
41.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
40.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
40.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
38.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
38.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
36.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
34.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
34.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
0.4
257
Tumor
0.4
1027
Tumor
0.4
777
Tumor
0.4
741
Tumor
0.3
567
Tumor
0.3
313
Tumor
0.3
743
Tumor
0.2
327
Tumor
0.2
452
Normal
0.2
533
Tumor
0.2
713
Tumor
0.2
755
Tumor
0.2
723
Tumor
0.2
955
Tumor
0.2
147
Tumor
0.2
436
Normal
0.2
738
Normal
0.2
745
Tumor
0.2
432
Normal
0.2
746
Normal
0.2
414
Normal
0.2
525
Tumor
0.2
728
Normal
0.2
616
Normal
0.2
724
Normal
0.2
617
Tumor
0.2
953
Tumor
0.2
227
Tumor
0.2
451
Tumor
0.2
353
Tumor
0.2
618
Normal
0.2
1026
Normal
0.2
426
Normal
0.2
714
Normal
0.2
435
Tumor
0.1
361
Tumor
0.1
113
Tumor
0.1
727
Tumor
0.1
981
Tumor
0.1
222
Normal
0.1
196
Normal
0.1
527
Tumor
0.1
112
Tumor
0.1
648
Normal
0.1
513
Tumor
0.1
1021
Tumor
0.1
362
Normal
0.1
366
Normal
0.1
627
Tumor
0.1
742
Normal
0.1
446
Normal
0.1
456
Normal
0.1
358
Normal
0.1
416
Normal
0.1
466
Normal
0.1
368
Normal
0.1
422
Normal
0.1
443
Tumor
0.1
221
Tumor
0.1
1022
Normal
0.1
132
Normal
0.1
851
Tumor
0.1
223
Tumor
0.1
351
Tumor
0.1
628
Normal
0.1
537
Tumor
0.1
258
Normal
0.1
424
Normal
0.1
172
Normal
0.1
642
Normal
0.1
314
Normal
0.1
111
Normal
0.1
128
Normal
0.1
356
Normal
0.1
722
Normal
0.1
482
Normal
0.1
328
Normal
0.1
186
Normal
0.1
162
Normal
0.1
278
Normal
0.1
376
Normal
0.1
756
Normal
0.1
862
Normal
0.1
462
Normal
0.1
477
Tumor
0.1
911
Tumor
0.1
341
Tumor
0.1
514
Normal
0.1
286
Normal
0.1
391
Tumor
0.1
411
Tumor
0.1
212
Normal
0.1
214
Normal
0.1
663
Tumor
0.1
141
Tumor
0.1
528
Normal
0.1
925
Tumor
0.1
924
Normal
0.1
342
Normal
0.1
534
Normal
0.1
515
Tumor
0.1
952
Normal
0.1
786
Normal
0.1
428
Normal
0.1
448
Normal
0.1
365
Tumor
0.1
423
Tumor
0.1
696
Normal
0.1
114
Normal
0.1
944
Normal
0.1
127
Tumor
0.1
1043
Tumor
0.0
698
Normal
0.0
412
Normal
0.0
666
Normal
0.0
283
Tumor
0.0
218
Normal
0.0
272
Normal
0.0
228
Normal
0.0
914
Normal
0.0
464
Normal
0.0
824
Normal
0.0
937
Tumor
0.0
983
Tumor
0.0
394
Normal
0.0
298
Normal
0.0
721
Tumor
0.0
956
Normal
0.0
217
Tumor
0.0
615
Tumor
0.0
463
Tumor
0.0
445
Tumor
0.0
858
Normal
0.0
123
Tumor
0.0
388
Normal
0.0
386
Normal
0.0
664
Normal
0.0
468
Normal
0.0
262
Normal
0.0
136
Normal
0.0
816
Normal
0.0
343
Tumor
0.0
465
Tumor
0.0
434
Normal
0.0
284
Normal
0.0
357
Tumor
0.0
1016
Normal
0.0
546
Normal
0.0
148
Normal
0.0
267
Tumor
0.0
484
Normal
0.0
685
Tumor
0.0
195
Tumor
0.0
363
Tumor
0.0
387
Tumor
0.0
557
Tumor
0.0
778
Normal
0.0
864
Normal
0.0
364
Normal
0.0
367
Tumor
0.0
868
Normal
0.0
161
Tumor
0.0
912
Normal
0.0
231
Tumor
0.0
647
Tumor
0.0
421
Tumor
0.0
518
Normal
0.0
1028
Normal
0.0
662
Normal
0.0
857
Tumor
0.0
494
Normal
0.0
137
Tumor
0.0
312
Normal
0.0
918
Normal
0.0
472
Normal
0.0
188
Normal
0.0
564
Normal
0.0
884
Normal
0.0
818
Normal
0.0
493
Tumor
0.0
815
Tumor
0.0
863
Tumor
0.0
558
Normal
0.0
571
Tumor
0.0
285
Tumor
0.0
474
Normal
0.0
926
Normal
0.0
874
Normal
0.0
232
Normal
0.0
261
Tumor
0.0
967
Tumor
0.0
966
Normal
0.0
455
Tumor
0.0
938
Normal
0.0
964
Normal
0.0
517
Tumor
0.0
487
Tumor
0.0
568
Normal
0.0
813
Tumor
0.0
277
Tumor
0.0
866
Normal
0.0
192
Normal
0.0
716
Normal
0.0
395
Tumor
0.0
882
Normal
0.0
185
Tumor
0.0
488
Normal
0.0
224
Normal
0.0
354
Normal
0.0
1042
Normal
0.0
861
Tumor
0.0
878
Normal
0.0
877
Tumor
0.0
867
Tumor
0.0
636
Normal
0.0
922
Normal
0.0
526
Normal
0.0
671
Tumor
0.0
427
Tumor
0.0
375
Tumor
0.0
573
Tumor
0.0
817
Tumor
0.0
344
Normal
0.0
138
Normal
0.0
686
Normal
0.0
271
Tumor
0.0
461
Tumor
0.0
396
Normal
0.0
384
Normal
0.0
976
Normal
0.0
574
Normal
0.0
171
Tumor
0.0
392
Normal
0.0
393
Tumor
-0.1
481
Tumor
-0.1
982
Normal
-0.1
968
Normal
-0.1
1044
Normal
-0.1
923
Tumor
-0.1
744
Normal
-0.1
124
Normal
-0.1
695
Tumor
-0.1
191
Tumor
-0.1
913
Tumor
-0.1
145
Tumor
-0.1
213
Tumor
-0.1
126
Normal
-0.1
297
Tumor
-0.1
491
Tumor
-0.1
977
Tumor
-0.1
957
Tumor
-0.1
187
Tumor
-0.1
665
Tumor
-0.1
865
Tumor
-0.1
425
Tumor
-0.1
1046
Normal
-0.1
641
Tumor
-0.1
431
Tumor
-0.1
1032
Normal
-0.1
697
Tumor
-0.1
413
Tumor
-0.1
915
Tumor
-0.1
352
Normal
-0.1
554
Normal
-0.1
311
Tumor
-0.1
883
Tumor
-0.1
965
Tumor
-0.1
873
Tumor
-0.1
978
Normal
-0.1
1045
Tumor
-0.1
268
Normal
-0.1
415
Tumor
-0.1
563
Tumor
-0.1
852
Normal
-0.1
661
Tumor
-0.1
1025
Tumor
-0.1
433
Tumor
-0.1
715
Tumor
-0.1
135
Tumor
-0.1
814
Normal
-0.1
385
Tumor
-0.1
142
Normal
-0.1
1013
Tumor
-0.1
332
Normal
-0.1
383
Tumor
-0.1
921
Tumor
-0.1
131
Tumor
-0.1
572
Normal
-0.1
444
Normal
-0.1
331
Tumor
-0.1
943
Tumor
-0.1
516
Normal
-0.1
146
Normal
-0.1
355
Tumor
-0.1
1041
Tumor
-0.1
785
Tumor
-0.1
1014
Normal
-0.1
916
Normal
-0.1
523
Tumor
-0.2
1015
Tumor
-0.2
471
Tumor
-0.2
951
Tumor
-0.2
497
Tumor
-0.2
211
Tumor
-0.2
553
Tumor
-0.2
467
Tumor
-0.2
1031
Tumor
-0.2
492
Normal
-0.2
954
Normal
-0.2
917
Tumor
-0.2
737
Tumor
-0.2
473
Tumor
-0.2
498
Normal
-0.2
483
Tumor
-0.2
538
Normal
-0.2
963
Tumor
-0.2
984
Normal
-0.2
881
Tumor
-0.2
958
Normal
-0.2
447
Tumor
-0.2
478
Normal
-0.2
823
Tumor
-0.2
536
Normal
-0.3
672
Normal
-0.3
975
Tumor
-0.3
524
Normal
-0.3
635
Tumor
-0.3
535
Tumor
-0.3
545
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
